FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5623, 474 aa
  1>>>pF1KE5623 474 - 474 aa - 474 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.5387+/-0.00104; mu= 17.3578+/- 0.063
 mean_var=101.5623+/-21.860, 0's: 0 Z-trim(105.7): 125  B-trim: 427 in 1/52
 Lambda= 0.127265
 statistics sampled from 8418 (8568) to 8418 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.633), E-opt: 0.2 (0.263), width:  16
 Scan time:  2.590

The best scores are:                                      opt bits E(32554)
CCDS33335.1 RBM45 gene_id:129831|Hs108|chr2        ( 474) 3156 590.5 1.2e-168


>>CCDS33335.1 RBM45 gene_id:129831|Hs108|chr2             (474 aa)
 initn: 3156 init1: 3156 opt: 3156  Z-score: 3141.0  bits: 590.5 E(32554): 1.2e-168
Smith-Waterman score: 3156; 100.0% identity (100.0% similar) in 474 aa overlap (1-474:1-474)

               10        20        30        40        50        60
pF1KE5 MDEAGSSASGGGFRPGVDSLDEPPNSRIFLVISKYTPESVLRERFSPFGDIQDIWVVRDK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 MDEAGSSASGGGFRPGVDSLDEPPNSRIFLVISKYTPESVLRERFSPFGDIQDIWVVRDK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 HTKESKGIAFVKFARSSQACRAMEEMHGQCLGPNDTKPIKVFIAQSRSSGSHRDVEDEEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 HTKESKGIAFVKFARSSQACRAMEEMHGQCLGPNDTKPIKVFIAQSRSSGSHRDVEDEEL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 TRIFVMIPKSYTEEDLREKFKVYGDIEYCSIIKNKVTGESKGLGYVRYLKPSQAAQAIEN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 TRIFVMIPKSYTEEDLREKFKVYGDIEYCSIIKNKVTGESKGLGYVRYLKPSQAAQAIEN
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE5 CDRSFRAILAEPKNKASESSEQDYYSNMRQEALGHEPRVNMFPFEQQSEFSSFDKNDSRG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 CDRSFRAILAEPKNKASESSEQDYYSNMRQEALGHEPRVNMFPFEQQSEFSSFDKNDSRG
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE5 QEAISKRLSVVSRVPFTEEQLFSIFDIVPGLEYCEVQRDPYSNYGHGVVQYFNVASAIYA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 QEAISKRLSVVSRVPFTEEQLFSIFDIVPGLEYCEVQRDPYSNYGHGVVQYFNVASAIYA
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE5 KYKLHGFQYPPGNRIGVSFIDDGSNATDLLRKMATQMVAAQLASMVWNNPSQQQFMQFGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 KYKLHGFQYPPGNRIGVSFIDDGSNATDLLRKMATQMVAAQLASMVWNNPSQQQFMQFGG
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE5 SSGSQLPQIQTDVVLPSCKKKAPAETPVKERLFIVFNPHPLPLDVLEDIFCRFGNLIEVY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 SSGSQLPQIQTDVVLPSCKKKAPAETPVKERLFIVFNPHPLPLDVLEDIFCRFGNLIEVY
              370       380       390       400       410       420

              430       440       450       460       470    
pF1KE5 LVSGKNVGYAKYADRISANDAIATLHGKILNGVRLKVMLADSPREESNKRQRTY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 LVSGKNVGYAKYADRISANDAIATLHGKILNGVRLKVMLADSPREESNKRQRTY
              430       440       450       460       470    




474 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 05:15:59 2016 done: Tue Nov  8 05:15:59 2016
 Total Scan time:  2.590 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]