FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5619, 481 aa
  1>>>pF1KE5619 481 - 481 aa - 481 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.8137+/-0.000946; mu= 15.6231+/- 0.057
 mean_var=73.5193+/-14.534, 0's: 0 Z-trim(105.6): 21  B-trim: 0 in 0/49
 Lambda= 0.149580
 statistics sampled from 8509 (8517) to 8509 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.627), E-opt: 0.2 (0.262), width:  16
 Scan time:  2.940

The best scores are:                                      opt bits E(32554)
CCDS8466.1 PUS3 gene_id:83480|Hs108|chr11          ( 481) 3230 706.5 1.6e-203
CCDS73411.1 PUS3 gene_id:83480|Hs108|chr11         ( 273) 1879 414.8 5.6e-116


>>CCDS8466.1 PUS3 gene_id:83480|Hs108|chr11               (481 aa)
 initn: 3230 init1: 3230 opt: 3230  Z-score: 3767.4  bits: 706.5 E(32554): 1.6e-203
Smith-Waterman score: 3230; 99.4% identity (99.8% similar) in 481 aa overlap (1-481:1-481)

               10        20        30        40        50        60
pF1KE5 MADNDTDRNQTEKLLKRVRELEQEVQRLKKEQAKNKEDSNIRENSSGAGKTKRAFDFSAH
       :: ::::::::::::::::::::::::::::::::::::::::::.::::::::::::::
CCDS84 MAYNDTDRNQTEKLLKRVRELEQEVQRLKKEQAKNKEDSNIRENSAGAGKTKRAFDFSAH
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 GRRHVALRIAYMGWGYQGFASQENTNNTIEEKLFEALTKTRLVESRQTSNYHRCGRTDKG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS84 GRRHVALRIAYMGWGYQGFASQENTNNTIEEKLFEALTKTRLVESRQTSNYHRCGRTDKG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 VSAFGQVISLDLRSQFPRGRDSEDFNVKEEANAAAEEIRYTHILNRVLPPDIRILAWAPV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS84 VSAFGQVISLDLRSQFPRGRDSEDFNVKEEANAAAEEIRYTHILNRVLPPDIRILAWAPV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE5 EPSFSARFSCLERTYRYFFPRADLDIVTMDYAAQKYVGTHDFRNLCKMDVANGVINFQRT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS84 EPSFSARFSCLERTYRYFFPRADLDIVTMDYAAQKYVGTHDFRNLCKMDVANGVINFQRT
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE5 ILSAQVQLVGQSPGEGRWQEPFQLCQFEVTGQAFLYHQVRCMMAILFLIGQGMEKPEIID
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS84 ILSAQVQLVGQSPGEGRWQEPFQLCQFEVTGQAFLYHQVRCMMAILFLIGQGMEKPEIID
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE5 ELLNIEKNPQKPQYSMAVEFPLVLYDCKFENVKWIYDQEAQEFNITHLQQLWANHAVKTH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS84 ELLNIEKNPQKPQYSMAVEFPLVLYDCKFENVKWIYDQEAQEFNITHLQQLWANHAVKTH
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE5 MLYSMLQGLDTVPVPCGIGPKMDGMTEWGNVKPSVIKQTSAFVEGVKMRTYKPLMDRPKC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS84 MLYSMLQGLDTVPVPCGIGPKMDGMTEWGNVKPSVIKQTSAFVEGVKMRTYKPLMDRPKC
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE5 QGLESRIQHFVRRGRIEHPHLFHEEETKAKRDCNDTLEEDNTNLETPTKRVCVDTEIKSI
       :::::::::::::::::::::::::::::::::::::::.::::::::::::::::::::
CCDS84 QGLESRIQHFVRRGRIEHPHLFHEEETKAKRDCNDTLEEENTNLETPTKRVCVDTEIKSI
              430       440       450       460       470       480

        
pF1KE5 I
       :
CCDS84 I
        

>>CCDS73411.1 PUS3 gene_id:83480|Hs108|chr11              (273 aa)
 initn: 1879 init1: 1879 opt: 1879  Z-score: 2195.6  bits: 414.8 E(32554): 5.6e-116
Smith-Waterman score: 1879; 99.6% identity (100.0% similar) in 273 aa overlap (209-481:1-273)

      180       190       200       210       220       230        
pF1KE5 PVEPSFSARFSCLERTYRYFFPRADLDIVTMDYAAQKYVGTHDFRNLCKMDVANGVINFQ
                                     ::::::::::::::::::::::::::::::
CCDS73                               MDYAAQKYVGTHDFRNLCKMDVANGVINFQ
                                             10        20        30

      240       250       260       270       280       290        
pF1KE5 RTILSAQVQLVGQSPGEGRWQEPFQLCQFEVTGQAFLYHQVRCMMAILFLIGQGMEKPEI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 RTILSAQVQLVGQSPGEGRWQEPFQLCQFEVTGQAFLYHQVRCMMAILFLIGQGMEKPEI
               40        50        60        70        80        90

      300       310       320       330       340       350        
pF1KE5 IDELLNIEKNPQKPQYSMAVEFPLVLYDCKFENVKWIYDQEAQEFNITHLQQLWANHAVK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 IDELLNIEKNPQKPQYSMAVEFPLVLYDCKFENVKWIYDQEAQEFNITHLQQLWANHAVK
              100       110       120       130       140       150

      360       370       380       390       400       410        
pF1KE5 THMLYSMLQGLDTVPVPCGIGPKMDGMTEWGNVKPSVIKQTSAFVEGVKMRTYKPLMDRP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 THMLYSMLQGLDTVPVPCGIGPKMDGMTEWGNVKPSVIKQTSAFVEGVKMRTYKPLMDRP
              160       170       180       190       200       210

      420       430       440       450       460       470        
pF1KE5 KCQGLESRIQHFVRRGRIEHPHLFHEEETKAKRDCNDTLEEDNTNLETPTKRVCVDTEIK
       :::::::::::::::::::::::::::::::::::::::::.::::::::::::::::::
CCDS73 KCQGLESRIQHFVRRGRIEHPHLFHEEETKAKRDCNDTLEEENTNLETPTKRVCVDTEIK
              220       230       240       250       260       270

      480 
pF1KE5 SII
       :::
CCDS73 SII
          




481 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 05:13:15 2016 done: Tue Nov  8 05:13:16 2016
 Total Scan time:  2.940 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]