FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5616, 502 aa
  1>>>pF1KE5616 502 - 502 aa - 502 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.8410+/-0.000835; mu= 16.1895+/- 0.050
 mean_var=80.0448+/-15.928, 0's: 0 Z-trim(107.7): 18  B-trim: 0 in 0/52
 Lambda= 0.143353
 statistics sampled from 9704 (9718) to 9704 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.678), E-opt: 0.2 (0.299), width:  16
 Scan time:  3.150

The best scores are:                                      opt bits E(32554)
CCDS10922.1 ADAT1 gene_id:23536|Hs108|chr16        ( 502) 3420 717.0 1.2e-206


>>CCDS10922.1 ADAT1 gene_id:23536|Hs108|chr16             (502 aa)
 initn: 3420 init1: 3420 opt: 3420  Z-score: 3823.3  bits: 717.0 E(32554): 1.2e-206
Smith-Waterman score: 3420; 100.0% identity (100.0% similar) in 502 aa overlap (1-502:1-502)

               10        20        30        40        50        60
pF1KE5 MWTADEIAQLCYEHYGIRLPKKGKPEPNHEWTLLAAVVKIQSPADKACDTPDKPVQVTKE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MWTADEIAQLCYEHYGIRLPKKGKPEPNHEWTLLAAVVKIQSPADKACDTPDKPVQVTKE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 VVSMGTGTKCIGQSKMRKNGDILNDSHAEVIARRSFQRYLLHQLQLAATLKEDSIFVPGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 VVSMGTGTKCIGQSKMRKNGDILNDSHAEVIARRSFQRYLLHQLQLAATLKEDSIFVPGT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 QKGVWKLRRDLIFVFFSSHTPCGDASIIPMLEFEDQPCCPVFRNWAHNSSVEASSNLEAP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 QKGVWKLRRDLIFVFFSSHTPCGDASIIPMLEFEDQPCCPVFRNWAHNSSVEASSNLEAP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE5 GNERKCEDPDSPVTKKMRLEPGTAAREVTNGAAHHQSFGKQKSGPISPGIHSCDLTVEGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 GNERKCEDPDSPVTKKMRLEPGTAAREVTNGAAHHQSFGKQKSGPISPGIHSCDLTVEGL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE5 ATVTRIAPGSAKVIDVYRTGAKCVPGEAGDSGKPGAAFHQVGLLRVKPGRGDRTRSMSCS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 ATVTRIAPGSAKVIDVYRTGAKCVPGEAGDSGKPGAAFHQVGLLRVKPGRGDRTRSMSCS
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE5 DKMARWNVLGCQGALLMHLLEEPIYLSAVVIGKCPYSQEAMQRALIGRCQNVSALPKGFG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 DKMARWNVLGCQGALLMHLLEEPIYLSAVVIGKCPYSQEAMQRALIGRCQNVSALPKGFG
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE5 VQELKILQSDLLFEQSRSAVQAKRADSPGRLVPCGAAISWSAVPEQPLDVTANGFPQGTT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 VQELKILQSDLLFEQSRSAVQAKRADSPGRLVPCGAAISWSAVPEQPLDVTANGFPQGTT
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE5 KKTIGSLQARSQISKVELFRSFQKLLSRIARDKWPHSLRVQKLDTYQEYKEAASSYQEAW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 KKTIGSLQARSQISKVELFRSFQKLLSRIARDKWPHSLRVQKLDTYQEYKEAASSYQEAW
              430       440       450       460       470       480

              490       500  
pF1KE5 STLRKQVFGSWIRNPPDYHQFK
       ::::::::::::::::::::::
CCDS10 STLRKQVFGSWIRNPPDYHQFK
              490       500  




502 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 05:11:19 2016 done: Tue Nov  8 05:11:19 2016
 Total Scan time:  3.150 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]