Result of FASTA (omim) for
pFN21AE5607
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE5607, 586 aa
1>>>pF1KE5607 586 - 586 aa - 586 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 8.6488+/-0.000402; mu= 3.9593+/- 0.025
mean_var=177.8544+/-34.690, 0's: 0 Z-trim(118.3): 23 B-trim: 0 in 0/51
Lambda= 0.096171
statistics sampled from 31067 (31089) to 31067 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.695), E-opt: 0.2 (0.365), width: 16
Scan time: 10.290
The best scores are: opt bits E(85289)
XP_011532720 (OMIM: 605974) PREDICTED: pre-mRNA-sp ( 586) 3970 563.3 7.9e-160
NP_006416 (OMIM: 605974) pre-mRNA-splicing factor ( 586) 3970 563.3 7.9e-160
XP_005265850 (OMIM: 605974) PREDICTED: pre-mRNA-sp ( 596) 3970 563.3 8e-160
>>XP_011532720 (OMIM: 605974) PREDICTED: pre-mRNA-splici (586 aa)
initn: 3970 init1: 3970 opt: 3970 Z-score: 2990.4 bits: 563.3 E(85289): 7.9e-160
Smith-Waterman score: 3970; 99.7% identity (99.8% similar) in 586 aa overlap (1-586:1-586)
10 20 30 40 50 60
pF1KE5 MSATVVDAVNAAPLSGSKEMSLEEPKKMTREDWRKKKELEEQRKLGNAPAEVDEEGKDIN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MSATVVDAVNAAPLSGSKEMSLEEPKKMTREDWRKKKELEEQRKLGNAPAEVDEEGKDIN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 PHIPQYISSVPWYIDPSKRPTLKHQRPQPEKQKQFSSSGEWYKRGVKENSVITKYRKGAC
::::::::::::::::::::::::::::::::::::::::::::::::::.:::::::::
XP_011 PHIPQYISSVPWYIDPSKRPTLKHQRPQPEKQKQFSSSGEWYKRGVKENSIITKYRKGAC
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE5 ENCGAMTHKKKDCFERPRRVGAKFTGTNIAPDEHVQPQLMFDYDGKRDRWNGYNPEEHMK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ENCGAMTHKKKDCFERPRRVGAKFTGTNIAPDEHVQPQLMFDYDGKRDRWNGYNPEEHMK
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE5 IVEEYAKVDLAKRTLKAQKLQEELASGKLVEQANSPKHQWGEEEPNSQTEKDHNSEDEDE
:::::::::::::::::::::::::::::::::::::::::::::::: :::::::::::
XP_011 IVEEYAKVDLAKRTLKAQKLQEELASGKLVEQANSPKHQWGEEEPNSQMEKDHNSEDEDE
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE5 DKYADDIDMPGQNFDSKRRITVRNLRIREDIAKYLRNLDPNSAYYDPKTRAMRENPYANA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DKYADDIDMPGQNFDSKRRITVRNLRIREDIAKYLRNLDPNSAYYDPKTRAMRENPYANA
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE5 GKNPDEVSYAGDNFVRYTGDTISMAQTQLFAWEAYDKGSEVHLQADPTKLELLYKSFKVK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GKNPDEVSYAGDNFVRYTGDTISMAQTQLFAWEAYDKGSEVHLQADPTKLELLYKSFKVK
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE5 KEDFKEQQKESILEKYGGQEHLDAPPAELLLAQTEDYVEYSRHGTVIKGQERAVACSKYE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KEDFKEQQKESILEKYGGQEHLDAPPAELLLAQTEDYVEYSRHGTVIKGQERAVACSKYE
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE5 EDVKIHNHTHIWGSYWKEGRWGYKCCHSFFKYSYCTGEAGKEIVNSEECIINEITGEESV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EDVKIHNHTHIWGSYWKEGRWGYKCCHSFFKYSYCTGEAGKEIVNSEECIINEITGEESV
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE5 KKPQTLMELHQEKLKEEKKKKKKKKKKHRKSSSDSDDEEKKHEKLKKALNAEEARLLHVK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KKPQTLMELHQEKLKEEKKKKKKKKKKHRKSSSDSDDEEKKHEKLKKALNAEEARLLHVK
490 500 510 520 530 540
550 560 570 580
pF1KE5 ETMQIDERKRPYNSMYETREPTEEEMEAYRMKRQRPDDPMASFLGQ
::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ETMQIDERKRPYNSMYETREPTEEEMEAYRMKRQRPDDPMASFLGQ
550 560 570 580
>>NP_006416 (OMIM: 605974) pre-mRNA-splicing factor SLU7 (586 aa)
initn: 3970 init1: 3970 opt: 3970 Z-score: 2990.4 bits: 563.3 E(85289): 7.9e-160
Smith-Waterman score: 3970; 99.7% identity (99.8% similar) in 586 aa overlap (1-586:1-586)
10 20 30 40 50 60
pF1KE5 MSATVVDAVNAAPLSGSKEMSLEEPKKMTREDWRKKKELEEQRKLGNAPAEVDEEGKDIN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 MSATVVDAVNAAPLSGSKEMSLEEPKKMTREDWRKKKELEEQRKLGNAPAEVDEEGKDIN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 PHIPQYISSVPWYIDPSKRPTLKHQRPQPEKQKQFSSSGEWYKRGVKENSVITKYRKGAC
::::::::::::::::::::::::::::::::::::::::::::::::::.:::::::::
NP_006 PHIPQYISSVPWYIDPSKRPTLKHQRPQPEKQKQFSSSGEWYKRGVKENSIITKYRKGAC
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE5 ENCGAMTHKKKDCFERPRRVGAKFTGTNIAPDEHVQPQLMFDYDGKRDRWNGYNPEEHMK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 ENCGAMTHKKKDCFERPRRVGAKFTGTNIAPDEHVQPQLMFDYDGKRDRWNGYNPEEHMK
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE5 IVEEYAKVDLAKRTLKAQKLQEELASGKLVEQANSPKHQWGEEEPNSQTEKDHNSEDEDE
:::::::::::::::::::::::::::::::::::::::::::::::: :::::::::::
NP_006 IVEEYAKVDLAKRTLKAQKLQEELASGKLVEQANSPKHQWGEEEPNSQMEKDHNSEDEDE
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE5 DKYADDIDMPGQNFDSKRRITVRNLRIREDIAKYLRNLDPNSAYYDPKTRAMRENPYANA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 DKYADDIDMPGQNFDSKRRITVRNLRIREDIAKYLRNLDPNSAYYDPKTRAMRENPYANA
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE5 GKNPDEVSYAGDNFVRYTGDTISMAQTQLFAWEAYDKGSEVHLQADPTKLELLYKSFKVK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 GKNPDEVSYAGDNFVRYTGDTISMAQTQLFAWEAYDKGSEVHLQADPTKLELLYKSFKVK
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE5 KEDFKEQQKESILEKYGGQEHLDAPPAELLLAQTEDYVEYSRHGTVIKGQERAVACSKYE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 KEDFKEQQKESILEKYGGQEHLDAPPAELLLAQTEDYVEYSRHGTVIKGQERAVACSKYE
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE5 EDVKIHNHTHIWGSYWKEGRWGYKCCHSFFKYSYCTGEAGKEIVNSEECIINEITGEESV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 EDVKIHNHTHIWGSYWKEGRWGYKCCHSFFKYSYCTGEAGKEIVNSEECIINEITGEESV
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE5 KKPQTLMELHQEKLKEEKKKKKKKKKKHRKSSSDSDDEEKKHEKLKKALNAEEARLLHVK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 KKPQTLMELHQEKLKEEKKKKKKKKKKHRKSSSDSDDEEKKHEKLKKALNAEEARLLHVK
490 500 510 520 530 540
550 560 570 580
pF1KE5 ETMQIDERKRPYNSMYETREPTEEEMEAYRMKRQRPDDPMASFLGQ
::::::::::::::::::::::::::::::::::::::::::::::
NP_006 ETMQIDERKRPYNSMYETREPTEEEMEAYRMKRQRPDDPMASFLGQ
550 560 570 580
>>XP_005265850 (OMIM: 605974) PREDICTED: pre-mRNA-splici (596 aa)
initn: 3970 init1: 3970 opt: 3970 Z-score: 2990.3 bits: 563.3 E(85289): 8e-160
Smith-Waterman score: 3970; 99.7% identity (99.8% similar) in 586 aa overlap (1-586:11-596)
10 20 30 40 50
pF1KE5 MSATVVDAVNAAPLSGSKEMSLEEPKKMTREDWRKKKELEEQRKLGNAPA
::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MKTSIGGQITMSATVVDAVNAAPLSGSKEMSLEEPKKMTREDWRKKKELEEQRKLGNAPA
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE5 EVDEEGKDINPHIPQYISSVPWYIDPSKRPTLKHQRPQPEKQKQFSSSGEWYKRGVKENS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 EVDEEGKDINPHIPQYISSVPWYIDPSKRPTLKHQRPQPEKQKQFSSSGEWYKRGVKENS
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE5 VITKYRKGACENCGAMTHKKKDCFERPRRVGAKFTGTNIAPDEHVQPQLMFDYDGKRDRW
.:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 IITKYRKGACENCGAMTHKKKDCFERPRRVGAKFTGTNIAPDEHVQPQLMFDYDGKRDRW
130 140 150 160 170 180
180 190 200 210 220 230
pF1KE5 NGYNPEEHMKIVEEYAKVDLAKRTLKAQKLQEELASGKLVEQANSPKHQWGEEEPNSQTE
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::: :
XP_005 NGYNPEEHMKIVEEYAKVDLAKRTLKAQKLQEELASGKLVEQANSPKHQWGEEEPNSQME
190 200 210 220 230 240
240 250 260 270 280 290
pF1KE5 KDHNSEDEDEDKYADDIDMPGQNFDSKRRITVRNLRIREDIAKYLRNLDPNSAYYDPKTR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 KDHNSEDEDEDKYADDIDMPGQNFDSKRRITVRNLRIREDIAKYLRNLDPNSAYYDPKTR
250 260 270 280 290 300
300 310 320 330 340 350
pF1KE5 AMRENPYANAGKNPDEVSYAGDNFVRYTGDTISMAQTQLFAWEAYDKGSEVHLQADPTKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 AMRENPYANAGKNPDEVSYAGDNFVRYTGDTISMAQTQLFAWEAYDKGSEVHLQADPTKL
310 320 330 340 350 360
360 370 380 390 400 410
pF1KE5 ELLYKSFKVKKEDFKEQQKESILEKYGGQEHLDAPPAELLLAQTEDYVEYSRHGTVIKGQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 ELLYKSFKVKKEDFKEQQKESILEKYGGQEHLDAPPAELLLAQTEDYVEYSRHGTVIKGQ
370 380 390 400 410 420
420 430 440 450 460 470
pF1KE5 ERAVACSKYEEDVKIHNHTHIWGSYWKEGRWGYKCCHSFFKYSYCTGEAGKEIVNSEECI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 ERAVACSKYEEDVKIHNHTHIWGSYWKEGRWGYKCCHSFFKYSYCTGEAGKEIVNSEECI
430 440 450 460 470 480
480 490 500 510 520 530
pF1KE5 INEITGEESVKKPQTLMELHQEKLKEEKKKKKKKKKKHRKSSSDSDDEEKKHEKLKKALN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 INEITGEESVKKPQTLMELHQEKLKEEKKKKKKKKKKHRKSSSDSDDEEKKHEKLKKALN
490 500 510 520 530 540
540 550 560 570 580
pF1KE5 AEEARLLHVKETMQIDERKRPYNSMYETREPTEEEMEAYRMKRQRPDDPMASFLGQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 AEEARLLHVKETMQIDERKRPYNSMYETREPTEEEMEAYRMKRQRPDDPMASFLGQ
550 560 570 580 590
586 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 05:05:45 2016 done: Tue Nov 8 05:05:47 2016
Total Scan time: 10.290 Total Display time: 0.030
Function used was FASTA [36.3.4 Apr, 2011]