FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5607, 586 aa
  1>>>pF1KE5607 586 - 586 aa - 586 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.0923+/-0.00099; mu= 7.6833+/- 0.060
 mean_var=170.6998+/-32.878, 0's: 0 Z-trim(110.4): 10  B-trim: 0 in 0/52
 Lambda= 0.098165
 statistics sampled from 11554 (11558) to 11554 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.695), E-opt: 0.2 (0.355), width:  16
 Scan time:  2.830

The best scores are:                                      opt bits E(32554)
CCDS4352.1 SLU7 gene_id:10569|Hs108|chr5           ( 586) 3970 574.6 1.2e-163


>>CCDS4352.1 SLU7 gene_id:10569|Hs108|chr5                (586 aa)
 initn: 3970 init1: 3970 opt: 3970  Z-score: 3051.3  bits: 574.6 E(32554): 1.2e-163
Smith-Waterman score: 3970; 99.7% identity (99.8% similar) in 586 aa overlap (1-586:1-586)

               10        20        30        40        50        60
pF1KE5 MSATVVDAVNAAPLSGSKEMSLEEPKKMTREDWRKKKELEEQRKLGNAPAEVDEEGKDIN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 MSATVVDAVNAAPLSGSKEMSLEEPKKMTREDWRKKKELEEQRKLGNAPAEVDEEGKDIN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 PHIPQYISSVPWYIDPSKRPTLKHQRPQPEKQKQFSSSGEWYKRGVKENSVITKYRKGAC
       ::::::::::::::::::::::::::::::::::::::::::::::::::.:::::::::
CCDS43 PHIPQYISSVPWYIDPSKRPTLKHQRPQPEKQKQFSSSGEWYKRGVKENSIITKYRKGAC
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 ENCGAMTHKKKDCFERPRRVGAKFTGTNIAPDEHVQPQLMFDYDGKRDRWNGYNPEEHMK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 ENCGAMTHKKKDCFERPRRVGAKFTGTNIAPDEHVQPQLMFDYDGKRDRWNGYNPEEHMK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE5 IVEEYAKVDLAKRTLKAQKLQEELASGKLVEQANSPKHQWGEEEPNSQTEKDHNSEDEDE
       :::::::::::::::::::::::::::::::::::::::::::::::: :::::::::::
CCDS43 IVEEYAKVDLAKRTLKAQKLQEELASGKLVEQANSPKHQWGEEEPNSQMEKDHNSEDEDE
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE5 DKYADDIDMPGQNFDSKRRITVRNLRIREDIAKYLRNLDPNSAYYDPKTRAMRENPYANA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 DKYADDIDMPGQNFDSKRRITVRNLRIREDIAKYLRNLDPNSAYYDPKTRAMRENPYANA
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE5 GKNPDEVSYAGDNFVRYTGDTISMAQTQLFAWEAYDKGSEVHLQADPTKLELLYKSFKVK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 GKNPDEVSYAGDNFVRYTGDTISMAQTQLFAWEAYDKGSEVHLQADPTKLELLYKSFKVK
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE5 KEDFKEQQKESILEKYGGQEHLDAPPAELLLAQTEDYVEYSRHGTVIKGQERAVACSKYE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 KEDFKEQQKESILEKYGGQEHLDAPPAELLLAQTEDYVEYSRHGTVIKGQERAVACSKYE
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE5 EDVKIHNHTHIWGSYWKEGRWGYKCCHSFFKYSYCTGEAGKEIVNSEECIINEITGEESV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 EDVKIHNHTHIWGSYWKEGRWGYKCCHSFFKYSYCTGEAGKEIVNSEECIINEITGEESV
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE5 KKPQTLMELHQEKLKEEKKKKKKKKKKHRKSSSDSDDEEKKHEKLKKALNAEEARLLHVK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 KKPQTLMELHQEKLKEEKKKKKKKKKKHRKSSSDSDDEEKKHEKLKKALNAEEARLLHVK
              490       500       510       520       530       540

              550       560       570       580      
pF1KE5 ETMQIDERKRPYNSMYETREPTEEEMEAYRMKRQRPDDPMASFLGQ
       ::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 ETMQIDERKRPYNSMYETREPTEEEMEAYRMKRQRPDDPMASFLGQ
              550       560       570       580      




586 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 05:05:45 2016 done: Tue Nov  8 05:05:45 2016
 Total Scan time:  2.830 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]