FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5604, 477 aa
  1>>>pF1KE5604 477 - 477 aa - 477 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2909+/-0.000419; mu= 18.2276+/- 0.026
 mean_var=71.7549+/-14.871, 0's: 0 Z-trim(110.8): 11  B-trim: 0 in 0/53
 Lambda= 0.151408
 statistics sampled from 19181 (19191) to 19181 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.604), E-opt: 0.2 (0.225), width:  16
 Scan time:  7.930

The best scores are:                                      opt bits E(85289)
NP_001035526 (OMIM: 610957,613561) tyrosine--tRNA  ( 477) 3168 701.7 1.2e-201


>>NP_001035526 (OMIM: 610957,613561) tyrosine--tRNA liga  (477 aa)
 initn: 3168 init1: 3168 opt: 3168  Z-score: 3741.5  bits: 701.7 E(85289): 1.2e-201
Smith-Waterman score: 3168; 100.0% identity (100.0% similar) in 477 aa overlap (1-477:1-477)

               10        20        30        40        50        60
pF1KE5 MAAPILRSFSWGRWSGTLNLSVLLPLGLRKAHSGAQGLLAAQKARGLFKDFFPETGTKIE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAAPILRSFSWGRWSGTLNLSVLLPLGLRKAHSGAQGLLAAQKARGLFKDFFPETGTKIE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 LPELFDRGTASFPQTIYCGFDPTADSLHVGHLLALLGLFHLQRAGHNVIALVGGATARLG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LPELFDRGTASFPQTIYCGFDPTADSLHVGHLLALLGLFHLQRAGHNVIALVGGATARLG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 DPSGRTKEREALETERVRANARALRLGLEALAANHQQLFTDGRSWGSFTVLDNSAWYQKQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DPSGRTKEREALETERVRANARALRLGLEALAANHQQLFTDGRSWGSFTVLDNSAWYQKQ
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE5 HLVDFLAAVGGHFRMGTLLSRQSVQLRLKSPEGMSLAEFFYQVLQAYDFYYLFQRYGCRV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 HLVDFLAAVGGHFRMGTLLSRQSVQLRLKSPEGMSLAEFFYQVLQAYDFYYLFQRYGCRV
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE5 QLGGSDQLGNIMSGYEFINKLTGEDVFGITVPLITSTTGAKLGKSAGNAVWLNRDKTSPF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QLGGSDQLGNIMSGYEFINKLTGEDVFGITVPLITSTTGAKLGKSAGNAVWLNRDKTSPF
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE5 ELYQFFVRQPDDSVERYLKLFTFLPLPEIDHIMQLHVKEPERRGPQKRLAAEVTKLVHGR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ELYQFFVRQPDDSVERYLKLFTFLPLPEIDHIMQLHVKEPERRGPQKRLAAEVTKLVHGR
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE5 EGLDSAKRCTQALYHSSIDALEVMSDQELKELFKEAPFSEFFLDPGTSVLDTCRKANAIP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EGLDSAKRCTQALYHSSIDALEVMSDQELKELFKEAPFSEFFLDPGTSVLDTCRKANAIP
              370       380       390       400       410       420

              430       440       450       460       470       
pF1KE5 DGPRGYRMITEGGVSINHQQVTNPESVLIVGQHILKNGLSLLKIGKRNFYIIKWLQL
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DGPRGYRMITEGGVSINHQQVTNPESVLIVGQHILKNGLSLLKIGKRNFYIIKWLQL
              430       440       450       460       470       




477 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 05:03:50 2016 done: Tue Nov  8 05:03:51 2016
 Total Scan time:  7.930 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]