FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5604, 477 aa
  1>>>pF1KE5604 477 - 477 aa - 477 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.9576+/-0.000964; mu= 13.9522+/- 0.057
 mean_var=66.8571+/-13.681, 0's: 0 Z-trim(104.6): 12  B-trim: 0 in 0/51
 Lambda= 0.156856
 statistics sampled from 7980 (7983) to 7980 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.621), E-opt: 0.2 (0.245), width:  16
 Scan time:  2.600

The best scores are:                                      opt bits E(32554)
CCDS31770.1 YARS2 gene_id:51067|Hs108|chr12        ( 477) 3168 726.1  2e-209


>>CCDS31770.1 YARS2 gene_id:51067|Hs108|chr12             (477 aa)
 initn: 3168 init1: 3168 opt: 3168  Z-score: 3873.4  bits: 726.1 E(32554): 2e-209
Smith-Waterman score: 3168; 100.0% identity (100.0% similar) in 477 aa overlap (1-477:1-477)

               10        20        30        40        50        60
pF1KE5 MAAPILRSFSWGRWSGTLNLSVLLPLGLRKAHSGAQGLLAAQKARGLFKDFFPETGTKIE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 MAAPILRSFSWGRWSGTLNLSVLLPLGLRKAHSGAQGLLAAQKARGLFKDFFPETGTKIE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 LPELFDRGTASFPQTIYCGFDPTADSLHVGHLLALLGLFHLQRAGHNVIALVGGATARLG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 LPELFDRGTASFPQTIYCGFDPTADSLHVGHLLALLGLFHLQRAGHNVIALVGGATARLG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 DPSGRTKEREALETERVRANARALRLGLEALAANHQQLFTDGRSWGSFTVLDNSAWYQKQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 DPSGRTKEREALETERVRANARALRLGLEALAANHQQLFTDGRSWGSFTVLDNSAWYQKQ
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE5 HLVDFLAAVGGHFRMGTLLSRQSVQLRLKSPEGMSLAEFFYQVLQAYDFYYLFQRYGCRV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 HLVDFLAAVGGHFRMGTLLSRQSVQLRLKSPEGMSLAEFFYQVLQAYDFYYLFQRYGCRV
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE5 QLGGSDQLGNIMSGYEFINKLTGEDVFGITVPLITSTTGAKLGKSAGNAVWLNRDKTSPF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 QLGGSDQLGNIMSGYEFINKLTGEDVFGITVPLITSTTGAKLGKSAGNAVWLNRDKTSPF
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE5 ELYQFFVRQPDDSVERYLKLFTFLPLPEIDHIMQLHVKEPERRGPQKRLAAEVTKLVHGR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 ELYQFFVRQPDDSVERYLKLFTFLPLPEIDHIMQLHVKEPERRGPQKRLAAEVTKLVHGR
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE5 EGLDSAKRCTQALYHSSIDALEVMSDQELKELFKEAPFSEFFLDPGTSVLDTCRKANAIP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 EGLDSAKRCTQALYHSSIDALEVMSDQELKELFKEAPFSEFFLDPGTSVLDTCRKANAIP
              370       380       390       400       410       420

              430       440       450       460       470       
pF1KE5 DGPRGYRMITEGGVSINHQQVTNPESVLIVGQHILKNGLSLLKIGKRNFYIIKWLQL
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 DGPRGYRMITEGGVSINHQQVTNPESVLIVGQHILKNGLSLLKIGKRNFYIIKWLQL
              430       440       450       460       470       




477 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 05:03:50 2016 done: Tue Nov  8 05:03:50 2016
 Total Scan time:  2.600 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]