Result of FASTA (ccds) for
pFN21AE5574
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE5574, 454 aa
1>>>pF1KE5574 454 - 454 aa - 454 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.8463+/-0.000908; mu= 10.1463+/- 0.054
mean_var=119.1908+/-23.811, 0's: 0 Z-trim(109.0): 137 B-trim: 2 in 1/51
Lambda= 0.117477
statistics sampled from 10417 (10581) to 10417 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.702), E-opt: 0.2 (0.325), width: 16
Scan time: 2.820
The best scores are: opt bits E(32554)
CCDS53966.1 IL16 gene_id:3603|Hs108|chr15 (1331) 2928 507.8 2.6e-143
CCDS42069.1 IL16 gene_id:3603|Hs108|chr15 (1332) 2928 507.8 2.6e-143
CCDS34137.1 PDZD2 gene_id:23037|Hs108|chr5 (2839) 759 140.4 2.2e-32
>>CCDS53966.1 IL16 gene_id:3603|Hs108|chr15 (1331 aa)
initn: 3098 init1: 2928 opt: 2928 Z-score: 2686.3 bits: 507.8 E(32554): 2.6e-143
Smith-Waterman score: 2928; 98.5% identity (99.1% similar) in 452 aa overlap (1-452:1-452)
10 20 30 40 50 60
pF1KE5 MESHSRAGKSRKSAKFRSISRSLMLCNAKTSDDGSSPDEKYPDPFEISLAQGKEGIFHSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 MESHSRAGKSRKSAKFRSISRSLMLCNAKTSDDGSSPDEKYPDPFEISLAQGKEGIFHSS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 VQLADTSEAGPSSVPDLALASEAAQLQAAGNDRGKTCRRIFFMKESSTASSREKPGKLEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 VQLADTSEAGPSSVPDLALASEAAQLQAAGNDRGKTCRRIFFMKESSTASSREKPGKLEA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE5 QSSNFLFPKACHQRARSNSTSVNPYCTREIDFPMTKKSAAPTDRQPYSLCSNRKSLSQQL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 QSSNFLFPKACHQRARSNSTSVNPYCTREIDFPMTKKSAAPTDRQPYSLCSNRKSLSQQL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE5 DCPAGKAAGTSRPTRSLSTAQLVQPSGGLQASVISNIVLMKGQAKGLGFSIVGGKDSIYG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 DCPAGKAAGTSRPTRSLSTAQLVQPSGGLQASVISNIVLMKGQAKGLGFSIVGGKDSIYG
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE5 PIGIYVKTIFAGGAAAADGRLQEGDEILELNGESMAGLTHQDALQKFKQAKKGLLTLTVR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 PIGIYVKTIFAGGAAAADGRLQEGDEILELNGESMAGLTHQDALQKFKQAKKGLLTLTVR
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE5 TRLTAPPSLCSHLSPPLCRSLSSSTCITKDSSSFALESPSAPISTAKPNYRIMVEVSLQK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 TRLTAPPSLCSHLSPPLCRSLSSSTCITKDSSSFALESPSAPISTAKPNYRIMVEVSLQK
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE5 EAGVGLGIGLCSVPYFQCISGIFVHTLSPGSVAHLDGRLRCGDEIVEISDSPVHCLTLNE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 EAGVGLGIGLCSVPYFQCISGIFVHTLSPGSVAHLDGRLRCGDEIVEISDSPVHCLTLNE
370 380 390 400 410 420
430 440 450
pF1KE5 VYTILSHCDPGPVSIIVSRHPDPQKEEMEAQEVK
::::::::::::: :::::::::: :.. .:
CCDS53 VYTILSHCDPGPVPIIVSRHPDPQVSEQQLKEAVAQAVENTKFGKERHQWSLEGVKRLES
430 440 450 460 470 480
CCDS53 SWHGRPTLEKEREKNSAPPHRRAQKVMIRSSSDSSYMSGSPGGSPGSGSAEKPSSDVDIS
490 500 510 520 530 540
>>CCDS42069.1 IL16 gene_id:3603|Hs108|chr15 (1332 aa)
initn: 3098 init1: 2928 opt: 2928 Z-score: 2686.3 bits: 507.8 E(32554): 2.6e-143
Smith-Waterman score: 2928; 98.5% identity (99.1% similar) in 452 aa overlap (1-452:1-452)
10 20 30 40 50 60
pF1KE5 MESHSRAGKSRKSAKFRSISRSLMLCNAKTSDDGSSPDEKYPDPFEISLAQGKEGIFHSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 MESHSRAGKSRKSAKFRSISRSLMLCNAKTSDDGSSPDEKYPDPFEISLAQGKEGIFHSS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 VQLADTSEAGPSSVPDLALASEAAQLQAAGNDRGKTCRRIFFMKESSTASSREKPGKLEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 VQLADTSEAGPSSVPDLALASEAAQLQAAGNDRGKTCRRIFFMKESSTASSREKPGKLEA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE5 QSSNFLFPKACHQRARSNSTSVNPYCTREIDFPMTKKSAAPTDRQPYSLCSNRKSLSQQL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 QSSNFLFPKACHQRARSNSTSVNPYCTREIDFPMTKKSAAPTDRQPYSLCSNRKSLSQQL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE5 DCPAGKAAGTSRPTRSLSTAQLVQPSGGLQASVISNIVLMKGQAKGLGFSIVGGKDSIYG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 DCPAGKAAGTSRPTRSLSTAQLVQPSGGLQASVISNIVLMKGQAKGLGFSIVGGKDSIYG
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE5 PIGIYVKTIFAGGAAAADGRLQEGDEILELNGESMAGLTHQDALQKFKQAKKGLLTLTVR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 PIGIYVKTIFAGGAAAADGRLQEGDEILELNGESMAGLTHQDALQKFKQAKKGLLTLTVR
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE5 TRLTAPPSLCSHLSPPLCRSLSSSTCITKDSSSFALESPSAPISTAKPNYRIMVEVSLQK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 TRLTAPPSLCSHLSPPLCRSLSSSTCITKDSSSFALESPSAPISTAKPNYRIMVEVSLQK
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE5 EAGVGLGIGLCSVPYFQCISGIFVHTLSPGSVAHLDGRLRCGDEIVEISDSPVHCLTLNE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 EAGVGLGIGLCSVPYFQCISGIFVHTLSPGSVAHLDGRLRCGDEIVEISDSPVHCLTLNE
370 380 390 400 410 420
430 440 450
pF1KE5 VYTILSHCDPGPVSIIVSRHPDPQKEEMEAQEVK
::::::::::::: :::::::::: :.. .:
CCDS42 VYTILSHCDPGPVPIIVSRHPDPQVSEQQLKEAVAQAVENTKFGKERHQWSLEGVKRLES
430 440 450 460 470 480
CCDS42 SWHGRPTLEKEREKNSAPPHRRAQKVMIRSSSDSSYMSGSPGGSPGSGSAEKPSSDVDIS
490 500 510 520 530 540
>>CCDS34137.1 PDZD2 gene_id:23037|Hs108|chr5 (2839 aa)
initn: 739 init1: 415 opt: 759 Z-score: 694.8 bits: 140.4 E(32554): 2.2e-32
Smith-Waterman score: 759; 38.3% identity (66.4% similar) in 405 aa overlap (66-453:429-826)
40 50 60 70 80 90
pF1KE5 SPDEKYPDPFEISLAQGKEGIFHSSVQLADTSEAGP---SSVPDLALASEAAQLQAAGN-
::.. : ::: :.. .. . .: :.
CCDS34 EAVAILRSATGMVQLVVASKENSAEDLLRLTSKSLPDLTSSVEDVSSWTDNEDQEADGEE
400 410 420 430 440 450
100 110 120 130 140
pF1KE5 DRGKTCRRIFFM----KESSTASSREKPGKLEA--QSSNFLFPKACHQRARSNSTSVNPY
:.: . : . ... ...:. :.::. :.:: . :. . . ::. :
CCDS34 DEGTSSSVQRAMPGTDEPQDVCGAEESKGNLESPKQGSNKIKLKSRLSGGVHRLESVEEY
460 470 480 490 500 510
150 160 170 180 190 200
pF1KE5 CTREIDFPMTKKSAAPTDRQPYSLCSNRK-SLSQQLDCPAGKAAG--TSRPTRSLSTAQL
. ... : :. ..:: :: : :: ... ... ::::::.:.
CCDS34 NELMV------RNGDPRIRMLEVSRDGRKHSLPQLLDSSSASQEYHIVKKSTRSLSTTQV
520 530 540 550 560 570
210 220 230 240 250 260
pF1KE5 VQPSGGLQASVISNIVLMKGQAKGLGFSIVGGKDSIYGPIGIYVKTIFAGGAAAADGRLQ
.: .. :::: : :.: ..:::::::.::.: : : .::.::::: .:.:: ::::.
CCDS34 ESPWRLIRPSVISIIGLYKEKGKGLGFSIAGGRDCIRGQMGIFVKTIFPNGSAAEDGRLK
580 590 600 610 620 630
270 280 290 300 310
pF1KE5 EGDEILELNGESMAGLTHQDALQKFKQAKKGLLTLTVRTRLTAPP-SLCS---HLSPPLC
::::::..:: . ::: :.:.. ::: ..::..:::::.:..: . :: :.:
CCDS34 EGDEILDVNGIPIKGLTFQEAIHTFKQIRSGLFVLTVRTKLVSPSLTPCSTPTHMSRSAS
640 650 660 670 680 690
320 330 340 350 360 370
pF1KE5 RSLSSSTCITKDSSSFALESPSAPISTAKPNYRIMVEVSLQKEAGVGLGIGLCSVPYFQC
....: . .:. . : : .: :. ::..::.:.:: :::::: : . .
CCDS34 PNFNTSGGASAGGSDEG-SSSSLGRKTPGPKDRIVMEVTLNKEPRVGLGIGACCLALENS
700 710 720 730 740 750
380 390 400 410 420 430
pF1KE5 ISGIFVHTLSPGSVAHLDGRLRCGDEIVEISDSPVHCLTLNEVYTILSHCDPGPVSIIVS
::..:.:.:::::.... : ::.:.:... :. .:..:..:::.: :::: ....
CCDS34 PPGIYIHSLAPGSVAKMESNLSRGDQILEVNSVNVRHAALSKVHAILSKCPPGPVRLVIG
760 770 780 790 800 810
440 450
pF1KE5 RHPDPQKEEMEAQEVK
:::.:. :.: .::
CCDS34 RHPNPKVSEQEMDEVIARSTYQESKEANSSPGLGTPLKSPSLAKKDSLISESELSQYFAH
820 830 840 850 860 870
454 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 01:58:37 2016 done: Tue Nov 8 01:58:37 2016
Total Scan time: 2.820 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]