FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5569, 446 aa
  1>>>pF1KE5569 446 - 446 aa - 446 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 11.4950+/-0.000498; mu= -8.2418+/- 0.031
 mean_var=488.3129+/-97.977, 0's: 0 Z-trim(121.9): 60  B-trim: 0 in 0/59
 Lambda= 0.058040
 statistics sampled from 39179 (39239) to 39179 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.774), E-opt: 0.2 (0.46), width:  16
 Scan time:  9.660

The best scores are:                                      opt bits E(85289)
NP_005079 (OMIM: 312095,465000) A-kinase anchor pr ( 695) 2484 222.6 2.6e-57


>>NP_005079 (OMIM: 312095,465000) A-kinase anchor protei  (695 aa)
 initn: 2510 init1: 2484 opt: 2484  Z-score: 1149.8  bits: 222.6 E(85289): 2.6e-57
Smith-Waterman score: 2484; 99.7% identity (99.7% similar) in 384 aa overlap (1-384:1-384)

               10        20        30        40        50        60
pF1KE5 MAAATIVHDTSEAVELCPAYGLYLKPITKMTISVALPQLKQPGKSISNWEVMERLKGMVQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 MAAATIVHDTSEAVELCPAYGLYLKPITKMTISVALPQLKQPGKSISNWEVMERLKGMVQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 NHQFSTLRISKSTMDFIRFEGEVENKSLVKSFLACLDGKTIKLSGFSDILKVRAAEFKID
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 NHQFSTLRISKSTMDFIRFEGEVENKSLVKSFLACLDGKTIKLSGFSDILKVRAAEFKID
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 FPTRHDWDSFFRDAKDMNETLPGERPDTIHLEGLPCKWFALKESGSEKPSEDVLVKVFEK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 FPTRHDWDSFFRDAKDMNETLPGERPDTIHLEGLPCKWFALKESGSEKPSEDVLVKVFEK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE5 FGEIRNVDIPMLDSYREEMTGRNFHTFSFGGHLNFEAYVQYREYMGFIQAMSALRGMKLM
       ::::::::::::: ::::::::::::::::::::::::::::::::::::::::::::::
NP_005 FGEIRNVDIPMLDPYREEMTGRNFHTFSFGGHLNFEAYVQYREYMGFIQAMSALRGMKLM
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE5 YKGEDGKAVACNIKVSFDSTKHLSDASIKKRQLERQKLQELEQQREEQKRREKEAEERQR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 YKGEDGKAVACNIKVSFDSTKHLSDASIKKRQLERQKLQELEQQREEQKRREKEAEERQR
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE5 AEERKQKELEELERERKREEKLRKREQKQRDRELRRNQKKLEKLQAEEQKQLQEKIKLEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 AEERKQKELEELERERKREEKLRKREQKQRDRELRRNQKKLEKLQAEEQKQLQEKIKLEE
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE5 RKLLLAQRNLQSIRLIAELLSRAKVPGGSLCSRQPRPGCPQCPPLKCGRRHGAVSPPAAA
       ::::::::::::::::::::::::                                    
NP_005 RKLLLAQRNLQSIRLIAELLSRAKAVKLREQEQKEEKLRLQQQEERRRLQEAELRRVEEE
              370       380       390       400       410       420




446 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 01:55:52 2016 done: Tue Nov  8 01:55:53 2016
 Total Scan time:  9.660 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]