FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5556, 374 aa
  1>>>pF1KE5556 374 - 374 aa - 374 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.5147+/-0.00104; mu= 15.2614+/- 0.063
 mean_var=61.3552+/-12.248, 0's: 0 Z-trim(102.2): 33  B-trim: 239 in 1/49
 Lambda= 0.163738
 statistics sampled from 6845 (6862) to 6845 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.564), E-opt: 0.2 (0.211), width:  16
 Scan time:  2.400

The best scores are:                                      opt bits E(32554)
CCDS7880.1 EIF3M gene_id:10480|Hs108|chr11         ( 374) 2414 579.1 2.2e-165
CCDS76392.1 EIF3M gene_id:10480|Hs108|chr11        ( 242) 1498 362.7  2e-100


>>CCDS7880.1 EIF3M gene_id:10480|Hs108|chr11              (374 aa)
 initn: 2414 init1: 2414 opt: 2414  Z-score: 3082.8  bits: 579.1 E(32554): 2.2e-165
Smith-Waterman score: 2414; 100.0% identity (100.0% similar) in 374 aa overlap (1-374:1-374)

               10        20        30        40        50        60
pF1KE5 MSVPAFIDISEEDQAAELRAYLKSKGAEISEENSEGGLHVDLAQIIEACDVCLKEDDKDV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 MSVPAFIDISEEDQAAELRAYLKSKGAEISEENSEGGLHVDLAQIIEACDVCLKEDDKDV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 ESVMNSVVSLLLILEPDKQEALIESLCEKLVKFREGERPSLRLQLLSNLFHGMDKNTPVR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 ESVMNSVVSLLLILEPDKQEALIESLCEKLVKFREGERPSLRLQLLSNLFHGMDKNTPVR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 YTVYCSLIKVAASCGAIQYIPTELDQVRKWISDWNLTTEKKHTLLRLLYEALVDCKKSDA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 YTVYCSLIKVAASCGAIQYIPTELDQVRKWISDWNLTTEKKHTLLRLLYEALVDCKKSDA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE5 ASKVMVELLGSYTEDNASQARVDAHRCIVRALKDPNAFLFDHLLTLKPVKFLEGELIHDL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 ASKVMVELLGSYTEDNASQARVDAHRCIVRALKDPNAFLFDHLLTLKPVKFLEGELIHDL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE5 LTIFVSAKLASYVKFYQNNKDFIDSLGLLHEQNMAKMRLLTFMGMAVENKEISFDTMQQE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 LTIFVSAKLASYVKFYQNNKDFIDSLGLLHEQNMAKMRLLTFMGMAVENKEISFDTMQQE
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE5 LQIGADDVEAFVIDAVRTKMVYCKIDQTQRKVVVSHSTHRTFGKQQWQQLYDTLNAWKQN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 LQIGADDVEAFVIDAVRTKMVYCKIDQTQRKVVVSHSTHRTFGKQQWQQLYDTLNAWKQN
              310       320       330       340       350       360

              370    
pF1KE5 LNKVKNSLLSLSDT
       ::::::::::::::
CCDS78 LNKVKNSLLSLSDT
              370    

>>CCDS76392.1 EIF3M gene_id:10480|Hs108|chr11             (242 aa)
 initn: 1498 init1: 1498 opt: 1498  Z-score: 1916.4  bits: 362.7 E(32554): 2e-100
Smith-Waterman score: 1498; 99.1% identity (99.6% similar) in 233 aa overlap (142-374:10-242)

             120       130       140       150       160       170 
pF1KE5 GMDKNTPVRYTVYCSLIKVAASCGAIQYIPTELDQVRKWISDWNLTTEKKHTLLRLLYEA
                                     .: :::::::::::::::::::::::::::
CCDS76                      MSVPAFIDISEEDQVRKWISDWNLTTEKKHTLLRLLYEA
                                    10        20        30         

             180       190       200       210       220       230 
pF1KE5 LVDCKKSDAASKVMVELLGSYTEDNASQARVDAHRCIVRALKDPNAFLFDHLLTLKPVKF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 LVDCKKSDAASKVMVELLGSYTEDNASQARVDAHRCIVRALKDPNAFLFDHLLTLKPVKF
      40        50        60        70        80        90         

             240       250       260       270       280       290 
pF1KE5 LEGELIHDLLTIFVSAKLASYVKFYQNNKDFIDSLGLLHEQNMAKMRLLTFMGMAVENKE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 LEGELIHDLLTIFVSAKLASYVKFYQNNKDFIDSLGLLHEQNMAKMRLLTFMGMAVENKE
     100       110       120       130       140       150         

             300       310       320       330       340       350 
pF1KE5 ISFDTMQQELQIGADDVEAFVIDAVRTKMVYCKIDQTQRKVVVSHSTHRTFGKQQWQQLY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 ISFDTMQQELQIGADDVEAFVIDAVRTKMVYCKIDQTQRKVVVSHSTHRTFGKQQWQQLY
     160       170       180       190       200       210         

             360       370    
pF1KE5 DTLNAWKQNLNKVKNSLLSLSDT
       :::::::::::::::::::::::
CCDS76 DTLNAWKQNLNKVKNSLLSLSDT
     220       230       240  




374 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 01:47:42 2016 done: Tue Nov  8 01:47:43 2016
 Total Scan time:  2.400 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]