FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5549, 400 aa
  1>>>pF1KE5549 400 - 400 aa - 400 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.8740+/-0.00083; mu= 14.8171+/- 0.050
 mean_var=77.3028+/-15.378, 0's: 0 Z-trim(108.0): 30  B-trim: 43 in 1/51
 Lambda= 0.145874
 statistics sampled from 9915 (9934) to 9915 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.682), E-opt: 0.2 (0.305), width:  16
 Scan time:  2.370

The best scores are:                                      opt bits E(32554)
CCDS47204.1 PAIP1 gene_id:10605|Hs108|chr5         ( 400) 2666 570.4  1e-162
CCDS3947.1 PAIP1 gene_id:10605|Hs108|chr5          ( 479) 2610 558.6 4.3e-159
CCDS3948.1 PAIP1 gene_id:10605|Hs108|chr5          ( 367) 2440 522.8  2e-148


>>CCDS47204.1 PAIP1 gene_id:10605|Hs108|chr5              (400 aa)
 initn: 2666 init1: 2666 opt: 2666  Z-score: 3034.6  bits: 570.4 E(32554): 1e-162
Smith-Waterman score: 2666; 100.0% identity (100.0% similar) in 400 aa overlap (1-400:1-400)

               10        20        30        40        50        60
pF1KE5 MSDGFDRAPEQTRPLRAPPSSQDKIPQQNSESAMAKPQVVVAPVLMSKLSVNAPEFYPSG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 MSDGFDRAPEQTRPLRAPPSSQDKIPQQNSESAMAKPQVVVAPVLMSKLSVNAPEFYPSG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 YSSSYTESYEDGCEDYPTLSEYVQDFLNHLTEQPGSFETEIEQFAETLNGCVTTDDALQE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 YSSSYTESYEDGCEDYPTLSEYVQDFLNHLTEQPGSFETEIEQFAETLNGCVTTDDALQE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 LVELIYQQATSIPNFSYMGARLCNYLSHHLTISPQSGNFRQLLLQRCRTEYEVKDQAAKG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 LVELIYQQATSIPNFSYMGARLCNYLSHHLTISPQSGNFRQLLLQRCRTEYEVKDQAAKG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE5 DEVTRKRFHAFVLFLGELYLNLEIKGTNGQVTRADILQVGLRELLNALFSNPMDDNLICA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 DEVTRKRFHAFVLFLGELYLNLEIKGTNGQVTRADILQVGLRELLNALFSNPMDDNLICA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE5 VKLLKLTGSVLEDAWKEKGKMDMEEIIQRIENVVLDANCSRDVKQMLLKLVELRSSNWGR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 VKLLKLTGSVLEDAWKEKGKMDMEEIIQRIENVVLDANCSRDVKQMLLKLVELRSSNWGR
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE5 VHATSTYREATPENDPNYFMNEPTFYTSDGVPFTAADPDYQEKYQELLEREDFFPDYEEN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 VHATSTYREATPENDPNYFMNEPTFYTSDGVPFTAADPDYQEKYQELLEREDFFPDYEEN
              310       320       330       340       350       360

              370       380       390       400
pF1KE5 GTDLSGAGDPYLDDIDDEMDPEIEEAYEKFCLESERKRKQ
       ::::::::::::::::::::::::::::::::::::::::
CCDS47 GTDLSGAGDPYLDDIDDEMDPEIEEAYEKFCLESERKRKQ
              370       380       390       400

>>CCDS3947.1 PAIP1 gene_id:10605|Hs108|chr5               (479 aa)
 initn: 2610 init1: 2610 opt: 2610  Z-score: 2969.7  bits: 558.6 E(32554): 4.3e-159
Smith-Waterman score: 2610; 100.0% identity (100.0% similar) in 392 aa overlap (9-400:88-479)

                                     10        20        30        
pF1KE5                       MSDGFDRAPEQTRPLRAPPSSQDKIPQQNSESAMAKPQ
                                     ::::::::::::::::::::::::::::::
CCDS39 PLRQPRTTPPPGAQCEVPASPQRPSRPGALPEQTRPLRAPPSSQDKIPQQNSESAMAKPQ
        60        70        80        90       100       110       

       40        50        60        70        80        90        
pF1KE5 VVVAPVLMSKLSVNAPEFYPSGYSSSYTESYEDGCEDYPTLSEYVQDFLNHLTEQPGSFE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS39 VVVAPVLMSKLSVNAPEFYPSGYSSSYTESYEDGCEDYPTLSEYVQDFLNHLTEQPGSFE
       120       130       140       150       160       170       

      100       110       120       130       140       150        
pF1KE5 TEIEQFAETLNGCVTTDDALQELVELIYQQATSIPNFSYMGARLCNYLSHHLTISPQSGN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS39 TEIEQFAETLNGCVTTDDALQELVELIYQQATSIPNFSYMGARLCNYLSHHLTISPQSGN
       180       190       200       210       220       230       

      160       170       180       190       200       210        
pF1KE5 FRQLLLQRCRTEYEVKDQAAKGDEVTRKRFHAFVLFLGELYLNLEIKGTNGQVTRADILQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS39 FRQLLLQRCRTEYEVKDQAAKGDEVTRKRFHAFVLFLGELYLNLEIKGTNGQVTRADILQ
       240       250       260       270       280       290       

      220       230       240       250       260       270        
pF1KE5 VGLRELLNALFSNPMDDNLICAVKLLKLTGSVLEDAWKEKGKMDMEEIIQRIENVVLDAN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS39 VGLRELLNALFSNPMDDNLICAVKLLKLTGSVLEDAWKEKGKMDMEEIIQRIENVVLDAN
       300       310       320       330       340       350       

      280       290       300       310       320       330        
pF1KE5 CSRDVKQMLLKLVELRSSNWGRVHATSTYREATPENDPNYFMNEPTFYTSDGVPFTAADP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS39 CSRDVKQMLLKLVELRSSNWGRVHATSTYREATPENDPNYFMNEPTFYTSDGVPFTAADP
       360       370       380       390       400       410       

      340       350       360       370       380       390        
pF1KE5 DYQEKYQELLEREDFFPDYEENGTDLSGAGDPYLDDIDDEMDPEIEEAYEKFCLESERKR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS39 DYQEKYQELLEREDFFPDYEENGTDLSGAGDPYLDDIDDEMDPEIEEAYEKFCLESERKR
       420       430       440       450       460       470       

      400
pF1KE5 KQ
       ::
CCDS39 KQ
         

>>CCDS3948.1 PAIP1 gene_id:10605|Hs108|chr5               (367 aa)
 initn: 2440 init1: 2440 opt: 2440  Z-score: 2778.1  bits: 522.8 E(32554): 2e-148
Smith-Waterman score: 2440; 100.0% identity (100.0% similar) in 367 aa overlap (34-400:1-367)

            10        20        30        40        50        60   
pF1KE5 GFDRAPEQTRPLRAPPSSQDKIPQQNSESAMAKPQVVVAPVLMSKLSVNAPEFYPSGYSS
                                     ::::::::::::::::::::::::::::::
CCDS39                               MAKPQVVVAPVLMSKLSVNAPEFYPSGYSS
                                             10        20        30

            70        80        90       100       110       120   
pF1KE5 SYTESYEDGCEDYPTLSEYVQDFLNHLTEQPGSFETEIEQFAETLNGCVTTDDALQELVE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS39 SYTESYEDGCEDYPTLSEYVQDFLNHLTEQPGSFETEIEQFAETLNGCVTTDDALQELVE
               40        50        60        70        80        90

           130       140       150       160       170       180   
pF1KE5 LIYQQATSIPNFSYMGARLCNYLSHHLTISPQSGNFRQLLLQRCRTEYEVKDQAAKGDEV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS39 LIYQQATSIPNFSYMGARLCNYLSHHLTISPQSGNFRQLLLQRCRTEYEVKDQAAKGDEV
              100       110       120       130       140       150

           190       200       210       220       230       240   
pF1KE5 TRKRFHAFVLFLGELYLNLEIKGTNGQVTRADILQVGLRELLNALFSNPMDDNLICAVKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS39 TRKRFHAFVLFLGELYLNLEIKGTNGQVTRADILQVGLRELLNALFSNPMDDNLICAVKL
              160       170       180       190       200       210

           250       260       270       280       290       300   
pF1KE5 LKLTGSVLEDAWKEKGKMDMEEIIQRIENVVLDANCSRDVKQMLLKLVELRSSNWGRVHA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS39 LKLTGSVLEDAWKEKGKMDMEEIIQRIENVVLDANCSRDVKQMLLKLVELRSSNWGRVHA
              220       230       240       250       260       270

           310       320       330       340       350       360   
pF1KE5 TSTYREATPENDPNYFMNEPTFYTSDGVPFTAADPDYQEKYQELLEREDFFPDYEENGTD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS39 TSTYREATPENDPNYFMNEPTFYTSDGVPFTAADPDYQEKYQELLEREDFFPDYEENGTD
              280       290       300       310       320       330

           370       380       390       400
pF1KE5 LSGAGDPYLDDIDDEMDPEIEEAYEKFCLESERKRKQ
       :::::::::::::::::::::::::::::::::::::
CCDS39 LSGAGDPYLDDIDDEMDPEIEEAYEKFCLESERKRKQ
              340       350       360       




400 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 01:43:14 2016 done: Tue Nov  8 01:43:15 2016
 Total Scan time:  2.370 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]