FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5545, 388 aa
  1>>>pF1KE5545 388 - 388 aa - 388 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.9732+/-0.000852; mu= 14.3331+/- 0.051
 mean_var=91.4361+/-18.207, 0's: 0 Z-trim(108.6): 15  B-trim: 0 in 0/51
 Lambda= 0.134127
 statistics sampled from 10325 (10335) to 10325 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.697), E-opt: 0.2 (0.317), width:  16
 Scan time:  2.710

The best scores are:                                      opt bits E(32554)
CCDS54201.1 UBXN6 gene_id:80700|Hs108|chr19        ( 388) 2520 497.7 7.6e-141
CCDS12129.1 UBXN6 gene_id:80700|Hs108|chr19        ( 441) 2520 497.7 8.4e-141


>>CCDS54201.1 UBXN6 gene_id:80700|Hs108|chr19             (388 aa)
 initn: 2520 init1: 2520 opt: 2520  Z-score: 2642.1  bits: 497.7 E(32554): 7.6e-141
Smith-Waterman score: 2520; 100.0% identity (100.0% similar) in 388 aa overlap (1-388:1-388)

               10        20        30        40        50        60
pF1KE5 MAAAAALARLEQKQSRAWGPTSQDTIRNQVRKELQAEATVSGSPEAPGTNVVSEPREEGS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 MAAAAALARLEQKQSRAWGPTSQDTIRNQVRKELQAEATVSGSPEAPGTNVVSEPREEGS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 AHLAVPGVYFTCPLTGATLRKDQRDACIKEAILLHFSTDPVAASIMKIYTFNKDQDRVKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 AHLAVPGVYFTCPLTGATLRKDQRDACIKEAILLHFSTDPVAASIMKIYTFNKDQDRVKL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 GVDTIAKYLDNIHLHPEEEKYRKIKLQNKVFQERINCLEGTHEFFEAIGFQKVLLPAQDQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 GVDTIAKYLDNIHLHPEEEKYRKIKLQNKVFQERINCLEGTHEFFEAIGFQKVLLPAQDQ
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE5 EDPEEFYVLSETTLAQPQSLERHKEQLLAAEPVRAKLDRQRRVFQPSPLASQFELPGDFF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 EDPEEFYVLSETTLAQPQSLERHKEQLLAAEPVRAKLDRQRRVFQPSPLASQFELPGDFF
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE5 NLTAEEIKREQRLRSEAVERLSVLRTKAMREKEEQRGLRKYNYTLLRVRLPDGCLLQGTF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 NLTAEEIKREQRLRSEAVERLSVLRTKAMREKEEQRGLRKYNYTLLRVRLPDGCLLQGTF
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE5 YARERLGAVYGFVREALQSDWLPFELLASGGQKLSEDENLALNECGLVPSALLTFSWDMA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 YARERLGAVYGFVREALQSDWLPFELLASGGQKLSEDENLALNECGLVPSALLTFSWDMA
              310       320       330       340       350       360

              370       380        
pF1KE5 VLEDIKAAGAEPDSILKPELLSAIEKLL
       ::::::::::::::::::::::::::::
CCDS54 VLEDIKAAGAEPDSILKPELLSAIEKLL
              370       380        

>>CCDS12129.1 UBXN6 gene_id:80700|Hs108|chr19             (441 aa)
 initn: 2520 init1: 2520 opt: 2520  Z-score: 2641.3  bits: 497.7 E(32554): 8.4e-141
Smith-Waterman score: 2520; 100.0% identity (100.0% similar) in 388 aa overlap (1-388:54-441)

                                             10        20        30
pF1KE5                               MAAAAALARLEQKQSRAWGPTSQDTIRNQV
                                     ::::::::::::::::::::::::::::::
CCDS12 KESVGEKAHKEKPNQPAPRPPRQGPTNEAQMAAAAALARLEQKQSRAWGPTSQDTIRNQV
            30        40        50        60        70        80   

               40        50        60        70        80        90
pF1KE5 RKELQAEATVSGSPEAPGTNVVSEPREEGSAHLAVPGVYFTCPLTGATLRKDQRDACIKE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 RKELQAEATVSGSPEAPGTNVVSEPREEGSAHLAVPGVYFTCPLTGATLRKDQRDACIKE
            90       100       110       120       130       140   

              100       110       120       130       140       150
pF1KE5 AILLHFSTDPVAASIMKIYTFNKDQDRVKLGVDTIAKYLDNIHLHPEEEKYRKIKLQNKV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 AILLHFSTDPVAASIMKIYTFNKDQDRVKLGVDTIAKYLDNIHLHPEEEKYRKIKLQNKV
           150       160       170       180       190       200   

              160       170       180       190       200       210
pF1KE5 FQERINCLEGTHEFFEAIGFQKVLLPAQDQEDPEEFYVLSETTLAQPQSLERHKEQLLAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 FQERINCLEGTHEFFEAIGFQKVLLPAQDQEDPEEFYVLSETTLAQPQSLERHKEQLLAA
           210       220       230       240       250       260   

              220       230       240       250       260       270
pF1KE5 EPVRAKLDRQRRVFQPSPLASQFELPGDFFNLTAEEIKREQRLRSEAVERLSVLRTKAMR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 EPVRAKLDRQRRVFQPSPLASQFELPGDFFNLTAEEIKREQRLRSEAVERLSVLRTKAMR
           270       280       290       300       310       320   

              280       290       300       310       320       330
pF1KE5 EKEEQRGLRKYNYTLLRVRLPDGCLLQGTFYARERLGAVYGFVREALQSDWLPFELLASG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 EKEEQRGLRKYNYTLLRVRLPDGCLLQGTFYARERLGAVYGFVREALQSDWLPFELLASG
           330       340       350       360       370       380   

              340       350       360       370       380        
pF1KE5 GQKLSEDENLALNECGLVPSALLTFSWDMAVLEDIKAAGAEPDSILKPELLSAIEKLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 GQKLSEDENLALNECGLVPSALLTFSWDMAVLEDIKAAGAEPDSILKPELLSAIEKLL
           390       400       410       420       430       440 




388 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 01:41:18 2016 done: Tue Nov  8 01:41:18 2016
 Total Scan time:  2.710 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]