FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5540, 361 aa
  1>>>pF1KE5540 361 - 361 aa - 361 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 9.1917+/-0.000992; mu= 0.8917+/- 0.059
 mean_var=267.0082+/-53.681, 0's: 0 Z-trim(113.8): 34  B-trim: 11 in 1/52
 Lambda= 0.078490
 statistics sampled from 14416 (14441) to 14416 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.751), E-opt: 0.2 (0.444), width:  16
 Scan time:  2.100

The best scores are:                                      opt bits E(32554)
CCDS6962.1 SURF6 gene_id:6838|Hs108|chr9           ( 361) 2313 274.7 8.7e-74


>>CCDS6962.1 SURF6 gene_id:6838|Hs108|chr9                (361 aa)
 initn: 2313 init1: 2313 opt: 2313  Z-score: 1438.2  bits: 274.7 E(32554): 8.7e-74
Smith-Waterman score: 2313; 100.0% identity (100.0% similar) in 361 aa overlap (1-361:1-361)

               10        20        30        40        50        60
pF1KE5 MASLLAKDAYLQSLAKKICSHSAPEQQARTRAGKTQGSETAGPPKKKRKKTQKKFRKREE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 MASLLAKDAYLQSLAKKICSHSAPEQQARTRAGKTQGSETAGPPKKKRKKTQKKFRKREE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 KAAEHKAKSLGEKSPAASGARRPEAAKEEAAWASSSAGNPADGLATEPESVFALDVLRQR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 KAAEHKAKSLGEKSPAASGARRPEAAKEEAAWASSSAGNPADGLATEPESVFALDVLRQR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 LHEKIQEARGQGSAKELSPAALEKRRRRKQERDRKKRKRKELRAKEKARKAEEATEAQEV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 LHEKIQEARGQGSAKELSPAALEKRRRRKQERDRKKRKRKELRAKEKARKAEEATEAQEV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE5 VEATPEGACTEPREPPGLIFNKVEVSEDEPASKAQRRKEKRQRVKGNLTPLTGRNYRQLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 VEATPEGACTEPREPPGLIFNKVEVSEDEPASKAQRRKEKRQRVKGNLTPLTGRNYRQLL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE5 ERLQARQSRLDELRGQDEGKAQELEAKMKWTNLLYKAEGVKIRDDERLLQEALKRKEKRR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 ERLQARQSRLDELRGQDEGKAQELEAKMKWTNLLYKAEGVKIRDDERLLQEALKRKEKRR
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE5 AQRQRRWEKRTAGVVEKMQQRQDRRRQNLRRKKAARAERRLLRARKKGRILPQDLERAGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 AQRQRRWEKRTAGVVEKMQQRQDRRRQNLRRKKAARAERRLLRARKKGRILPQDLERAGL
              310       320       330       340       350       360

        
pF1KE5 V
       :
CCDS69 V
        




361 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 01:38:16 2016 done: Tue Nov  8 01:38:17 2016
 Total Scan time:  2.100 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]