Result of FASTA (ccds) for
pFN21AE5539
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE5539, 373 aa
1>>>pF1KE5539 373 - 373 aa - 373 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.8499+/-0.000863; mu= 18.9881+/- 0.052
mean_var=63.6173+/-12.926, 0's: 0 Z-trim(106.0): 24 B-trim: 0 in 0/50
Lambda= 0.160800
statistics sampled from 8715 (8733) to 8715 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.638), E-opt: 0.2 (0.268), width: 16
Scan time: 2.220
The best scores are: opt bits E(32554)
CCDS33648.1 APOBEC3F gene_id:200316|Hs108|chr22 ( 373) 2715 638.6 2.6e-183
CCDS46709.1 APOBEC3D gene_id:140564|Hs108|chr22 ( 386) 1933 457.2 1.1e-128
CCDS13982.1 APOBEC3B gene_id:9582|Hs108|chr22 ( 382) 1514 360.0 2e-99
CCDS13984.1 APOBEC3G gene_id:60489|Hs108|chr22 ( 384) 1253 299.4 3.4e-81
CCDS58807.1 APOBEC3B gene_id:9582|Hs108|chr22 ( 357) 1196 286.2 3.1e-77
CCDS13983.1 APOBEC3C gene_id:27350|Hs108|chr22 ( 190) 1066 255.8 2.2e-68
CCDS41747.1 AICDA gene_id:57379|Hs108|chr12 ( 198) 490 122.2 3.9e-28
CCDS33649.1 APOBEC3F gene_id:200316|Hs108|chr22 ( 101) 420 105.8 1.8e-23
CCDS4848.1 APOBEC2 gene_id:10930|Hs108|chr6 ( 224) 402 101.8 6e-22
CCDS54531.1 APOBEC3H gene_id:164668|Hs108|chr22 ( 182) 388 98.5 4.8e-21
CCDS13985.1 APOBEC3H gene_id:164668|Hs108|chr22 ( 183) 388 98.5 4.8e-21
CCDS54530.1 APOBEC3H gene_id:164668|Hs108|chr22 ( 200) 388 98.6 5.2e-21
CCDS81662.1 AICDA gene_id:57379|Hs108|chr12 ( 188) 370 94.4 8.9e-20
CCDS13981.1 APOBEC3A gene_id:200315|Hs108|chr22 ( 199) 356 91.1 8.9e-19
CCDS54532.1 APOBEC3H gene_id:164668|Hs108|chr22 ( 154) 319 82.5 2.8e-16
CCDS8579.1 APOBEC1 gene_id:339|Hs108|chr12 ( 236) 302 78.7 6e-15
>>CCDS33648.1 APOBEC3F gene_id:200316|Hs108|chr22 (373 aa)
initn: 2715 init1: 2715 opt: 2715 Z-score: 3404.4 bits: 638.6 E(32554): 2.6e-183
Smith-Waterman score: 2715; 99.5% identity (100.0% similar) in 373 aa overlap (1-373:1-373)
10 20 30 40 50 60
pF1KE5 MKPHFRNTVERMYRDTFSYNFYNRPILSRRNTVWLCYEVKTKGPSRPRLDAKIFRGQVYS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 MKPHFRNTVERMYRDTFSYNFYNRPILSRRNTVWLCYEVKTKGPSRPRLDAKIFRGQVYS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 QPEHHAEMCFLSWFCGNQLPAYKCFQITWFVSWTPCPDCVAKLAEFLSEHPNVTLTISAA
:::::::::::::::::::::::::::::::::::::::::::::::.::::::::::::
CCDS33 QPEHHAEMCFLSWFCGNQLPAYKCFQITWFVSWTPCPDCVAKLAEFLAEHPNVTLTISAA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE5 RLYYYWERDYRRALCRLSQAGARVKIMDDEEFAYCWENFVYSEGQPFMPWYKFDDNYAFL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 RLYYYWERDYRRALCRLSQAGARVKIMDDEEFAYCWENFVYSEGQPFMPWYKFDDNYAFL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE5 HRTLKEILRNPMEAMYPHIFYFHFKNLRKAYGRNESWLCFTMEVVKHHSPISWKRGVFRN
::::::::::::::::::::::::::::::::::::::::::::::::::.:::::::::
CCDS33 HRTLKEILRNPMEAMYPHIFYFHFKNLRKAYGRNESWLCFTMEVVKHHSPVSWKRGVFRN
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE5 QVDPETHCHAERCFLSWFCDDILSPNTNYEVTWYTSWSPCPECAGEVAEFLARHSNVNLT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 QVDPETHCHAERCFLSWFCDDILSPNTNYEVTWYTSWSPCPECAGEVAEFLARHSNVNLT
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE5 IFTARLYYFWDTDYQEGLRSLSQEGASVEIMGYKDFKYCWENFVYNDDEPFKPWKGLKYN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 IFTARLYYFWDTDYQEGLRSLSQEGASVEIMGYKDFKYCWENFVYNDDEPFKPWKGLKYN
310 320 330 340 350 360
370
pF1KE5 FLFLDSKLQEILE
:::::::::::::
CCDS33 FLFLDSKLQEILE
370
>>CCDS46709.1 APOBEC3D gene_id:140564|Hs108|chr22 (386 aa)
initn: 2682 init1: 1906 opt: 1933 Z-score: 2423.7 bits: 457.2 E(32554): 1.1e-128
Smith-Waterman score: 2082; 76.9% identity (86.3% similar) in 386 aa overlap (1-373:1-386)
10 20 30 40 50
pF1KE5 MKPHFRNTVERMYRDTFSYNFYNRPILSRRNTVWLCYEVKTK-GPSRPRLDAKIFRG---
:.:..:: .:::::::: :: :.::: :. .::::::: : : : :. .:::
CCDS46 MNPQIRNPMERMYRDTFYDNFENEPILYGRSYTWLCYEVKIKRGRSNLLWDTGVFRGPVL
10 20 30 40 50 60
60 70 80 90 100
pF1KE5 ---------QVYSQPEHHAEMCFLSWFCGNQLPAYKCFQITWFVSWTPCPDCVAKLAEFL
.:: . :.:::::::::::::.::: . :::::::::.:: ::.:...::
CCDS46 PKRQSNHRQEVYFRFENHAEMCFLSWFCGNRLPANRRFQITWFVSWNPCLPCVVKVTKFL
70 80 90 100 110 120
110 120 130 140 150 160
pF1KE5 SEHPNVTLTISAARLYYYWERDYRRALCRLSQAGARVKIMDDEEFAYCWENFVYSEGQPF
.::::::::::::::::: .::.: .: :: .::::::::: :.::::::::: .:::::
CCDS46 AEHPNVTLTISAARLYYYRDRDWRWVLLRLHKAGARVKIMDYEDFAYCWENFVCNEGQPF
130 140 150 160 170 180
170 180 190 200 210 220
pF1KE5 MPWYKFDDNYAFLHRTLKEILRNPMEAMYPHIFYFHFKNLRKAYGRNESWLCFTMEVVKH
::::::::::: :::::::::::::::::::::::::::: :: :::::::::::::.::
CCDS46 MPWYKFDDNYASLHRTLKEILRNPMEAMYPHIFYFHFKNLLKACGRNESWLCFTMEVTKH
190 200 210 220 230 240
230 240 250 260 270 280
pF1KE5 HSPISWKRGVFRNQVDPETHCHAERCFLSWFCDDILSPNTNYEVTWYTSWSPCPECAGEV
:: . ::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 HSAVFRKRGVFRNQVDPETHCHAERCFLSWFCDDILSPNTNYEVTWYTSWSPCPECAGEV
250 260 270 280 290 300
290 300 310 320 330 340
pF1KE5 AEFLARHSNVNLTIFTARLYYFWDTDYQEGLRSLSQEGASVEIMGYKDFKYCWENFVYND
::::::::::::::::::: ::::::::::: :::::::::.::::::: ::.::::.:
CCDS46 AEFLARHSNVNLTIFTARLCYFWDTDYQEGLCSLSQEGASVKIMGYKDFVSCWKNFVYSD
310 320 330 340 350 360
350 360 370
pF1KE5 DEPFKPWKGLKYNFLFLDSKLQEILE
::::::::::. :: .: .:.:::.
CCDS46 DEPFKPWKGLQTNFRLLKRRLREILQ
370 380
>>CCDS13982.1 APOBEC3B gene_id:9582|Hs108|chr22 (382 aa)
initn: 1457 init1: 952 opt: 1514 Z-score: 1898.5 bits: 360.0 E(32554): 2e-99
Smith-Waterman score: 1514; 59.5% identity (76.0% similar) in 383 aa overlap (1-373:1-378)
10 20 30 40 50
pF1KE5 MKPHFRNTVERMYRDTFSYNFYNRPILSRRNTVWLCYEVKTK-GPSRPRLDAKIFRGQVY
:.:..:: .:::::::: :: :.::: :. .::::::: : : : :. .::::::
CCDS13 MNPQIRNPMERMYRDTFYDNFENEPILYGRSYTWLCYEVKIKRGRSNLLWDTGVFRGQVY
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE5 SQPEHHAEMCFLSWFCGNQLPAYKCFQITWFVSWTPCPDCVAKLAEFLSEHPNVTLTISA
.:..:::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 FKPQYHAEMCFLSWFCGNQLPAYKCFQITWFVSWTPCPDCVAKLAEFLSEHPNVTLTISA
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE5 ARLYYYWERDYRRALCRLSQAGARVKIMDDEEFAYCWENFVYSEGQPFMPWYKFDDNYAF
::::::::::::::::::::::::: ::: ::::::::::::.::: ::::::::.::::
CCDS13 ARLYYYWERDYRRALCRLSQAGARVTIMDYEEFAYCWENFVYNEGQQFMPWYKFDENYAF
130 140 150 160 170 180
180 190 200 210 220 230
pF1KE5 LHRTLKEILRNPMEAMYPHIFYFHFKNLRKAYGRNESWLCFTMEVVKHHSPI--SWKRGV
:::::::::: :. : : :.:.: . : ...::. .: . . . . . . :
CCDS13 LHRTLKEILRYLMD---PDTFTFNFNNDPLVLRRRQTYLCYEVERLDNGTWVLMDQHMGF
190 200 210 220 230
240 250 260 270 280 290
pF1KE5 FRNQVDPETHC-----HAERCFLSWFCDDILSPNTNYEVTWYTSWSPCPE--CAGEVAEF
. :.. . : ::: ::. . :.: :.:::. ::::: ::::: :
CCDS13 LCNEAK-NLLCGFYGRHAELRFLDLVPSLQLDPAQIYRVTWFISWSPCFSWGCAGEVRAF
240 250 260 270 280 290
300 310 320 330 340 350
pF1KE5 LARHSNVNLTIFTARLYYFWDTDYQEGLRSLSQEGASVEIMGYKDFKYCWENFVYNDDEP
: ....: : ::.::.: . : :.:.:. : . ::.: :: : .:.:::..::: . :
CCDS13 LQENTHVRLRIFAARIYDY-DPLYKEALQMLRDAGAQVSIMTYDEFEYCWDTFVYRQGCP
300 310 320 330 340 350
360 370
pF1KE5 FKPWKGLKYNFLFLDSKLQEILE
:.:: ::. . :...:. ::.
CCDS13 FQPWDGLEEHSQALSGRLRAILQNQGN
360 370 380
>>CCDS13984.1 APOBEC3G gene_id:60489|Hs108|chr22 (384 aa)
initn: 1302 init1: 460 opt: 1253 Z-score: 1571.2 bits: 299.4 E(32554): 3.4e-81
Smith-Waterman score: 1253; 50.3% identity (72.8% similar) in 386 aa overlap (1-373:1-380)
10 20 30 40 50 60
pF1KE5 MKPHFRNTVERMYRDTFSYNFYNRPILSRRNTVWLCYEVKTKGPSRPRLDAKIFRGQVYS
::::::::::::::::::::::::::::::::::::::::::::::: ::::::::::::
CCDS13 MKPHFRNTVERMYRDTFSYNFYNRPILSRRNTVWLCYEVKTKGPSRPPLDAKIFRGQVYS
10 20 30 40 50 60
70 80 90 100 110
pF1KE5 QPEHHAEMCFLSWFCG-NQLPAYKCFQITWFVSWTPCPDCVAKLAEFLSEHPNVTLTISA
. ..: :: :. :: .: . ...::..::.:: :. .: ::.: :.::::: .
CCDS13 ELKYHPEMRFFHWFSKWRKLHRDQEYEVTWYISWSPCTKCTRDMATFLAEDPKVTLTIFV
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE5 ARLYYYWERDYRRALCRLSQA--GAR--VKIMDDEEFAYCWENFVYSEGQPFMPWYKFDD
:::::.:. ::..:: : : : : .:::. .:: .:: .::::. . : :: ..
CCDS13 ARLYYFWDPDYQEALRSLCQKRDGPRATMKIMNYDEFQHCWSKFVYSQRELFEPWNNLPK
130 140 150 160 170 180
180 190 200 210 220 230
pF1KE5 NYAFLHRTLKEILRNPMEAMYPHIFYFHFKNLRKAYGRNESWLCFTMEVVKHHSPI--SW
: .:: : ::::. :. : : :.:.: . ::.:..::. .: ... . . .
CCDS13 YYILLHIMLGEILRHSMD---PPTFTFNFNNEPWVRGRHETYLCYEVERMHNDTWVLLNQ
190 200 210 220 230
240 250 260 270 280
pF1KE5 KRGVFRNQVDPETHC-----HAERCFLSWFCDDILSPNTNYEVTWYTSWSPCPECAGEVA
.:: . ::. :. : ::: :::. . :. . .:.:: .:::::: :: :.:
CCDS13 RRGFLCNQA-PHKHGFLEGRHAELCFLDVIPFWKLDLDQDYRVTCFTSWSPCFSCAQEMA
240 250 260 270 280 290
290 300 310 320 330 340
pF1KE5 EFLARHSNVNLTIFTARLYYFWDTDY-QEGLRSLSQEGASVEIMGYKDFKYCWENFVYND
.:......:.: :::::.: : :::::.:.. ::.. :: :..::.::..:: ..
CCDS13 KFISKNKHVSLCIFTARIYD--DQGRCQEGLRTLAEAGAKISIMTYSEFKHCWDTFVDHQ
300 310 320 330 340 350
350 360 370
pF1KE5 DEPFKPWKGLKYNFLFLDSKLQEILE
::.:: :: . :...:. ::.
CCDS13 GCPFQPWDGLDEHSQDLSGRLRAILQNQEN
360 370 380
>>CCDS58807.1 APOBEC3B gene_id:9582|Hs108|chr22 (357 aa)
initn: 1431 init1: 949 opt: 1196 Z-score: 1500.2 bits: 286.2 E(32554): 3.1e-77
Smith-Waterman score: 1501; 59.8% identity (76.3% similar) in 376 aa overlap (1-373:1-353)
10 20 30 40 50
pF1KE5 MKPHFRNTVERMYRDTFSYNFYNRPILSRRNTVWLCYEVKTK-GPSRPRLDAKIFRGQVY
:.:..:: .:::::::: :: :.::: :. .::::::: : : : :. .::::::
CCDS58 MNPQIRNPMERMYRDTFYDNFENEPILYGRSYTWLCYEVKIKRGRSNLLWDTGVFRGQVY
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE5 SQPEHHAEMCFLSWFCGNQLPAYKCFQITWFVSWTPCPDCVAKLAEFLSEHPNVTLTISA
.:..:::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 FKPQYHAEMCFLSWFCGNQLPAYKCFQITWFVSWTPCPDCVAKLAEFLSEHPNVTLTISA
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE5 ARLYYYWERDYRRALCRLSQAGARVKIMDDEEFAYCWENFVYSEGQPFMPWYKFDDNYAF
::::::::::::::::::::::::: ::: ::::::::::::.::: ::::::::.::::
CCDS58 ARLYYYWERDYRRALCRLSQAGARVTIMDYEEFAYCWENFVYNEGQQFMPWYKFDENYAF
130 140 150 160 170 180
180 190 200 210 220 230
pF1KE5 LHRTLKEILRNPMEAMYPHIFYFHFKNLRKAYGRNESWLCFTMEVVKHHSPISWKRGVFR
:::::::::: :. : : :.:.: . : ...::. .: . . . : :.
CCDS58 LHRTLKEILRYLMD---PDTFTFNFNNDPLVLRRRQTYLCYEVERLDNGT---W---VLM
190 200 210 220 230
240 250 260 270 280 290
pF1KE5 NQVDPETHCHAERCFLSWFCDDILSPNTNYEVTWYTSWSPCPE--CAGEVAEFLARHSNV
.: : ....:.. :.: :.:::. ::::: ::::: :: ....:
CCDS58 DQ-------H-----MGFLCNE-LDPAQIYRVTWFISWSPCFSWGCAGEVRAFLQENTHV
240 250 260 270
300 310 320 330 340 350
pF1KE5 NLTIFTARLYYFWDTDYQEGLRSLSQEGASVEIMGYKDFKYCWENFVYNDDEPFKPWKGL
: ::.::.: . : :.:.:. : . ::.: :: : .:.:::..::: . ::.:: ::
CCDS58 RLRIFAARIYDY-DPLYKEALQMLRDAGAQVSIMTYDEFEYCWDTFVYRQGCPFQPWDGL
280 290 300 310 320 330
360 370
pF1KE5 KYNFLFLDSKLQEILE
. . :...:. ::.
CCDS58 EEHSQALSGRLRAILQNQGN
340 350
>>CCDS13983.1 APOBEC3C gene_id:27350|Hs108|chr22 (190 aa)
initn: 1646 init1: 1064 opt: 1066 Z-score: 1341.0 bits: 255.8 E(32554): 2.2e-68
Smith-Waterman score: 1066; 78.5% identity (89.8% similar) in 186 aa overlap (188-373:5-190)
160 170 180 190 200 210
pF1KE5 NFVYSEGQPFMPWYKFDDNYAFLHRTLKEILRNPMEAMYPHIFYFHFKNLRKAYGRNESW
.::::.:::: :::.:::: .: :::.:
CCDS13 MNPQIRNPMKAMYPGTFYFQFKNLWEANDRNETW
10 20 30
220 230 240 250 260 270
pF1KE5 LCFTMEVVKHHSPISWKRGVFRNQVDPETHCHAERCFLSWFCDDILSPNTNYEVTWYTSW
::::.: .:..: .::: :::::::: :::::::::::::::::::::::.:.:::::::
CCDS13 LCFTVEGIKRRSVVSWKTGVFRNQVDSETHCHAERCFLSWFCDDILSPNTKYQVTWYTSW
40 50 60 70 80 90
280 290 300 310 320 330
pF1KE5 SPCPECAGEVAEFLARHSNVNLTIFTARLYYFWDTDYQEGLRSLSQEGASVEIMGYKDFK
::::.::::::::::::::::::::::::::: ::::::::::::..:::: :.:::
CCDS13 SPCPDCAGEVAEFLARHSNVNLTIFTARLYYFQYPCYQEGLRSLSQEGVAVEIMDYEDFK
100 110 120 130 140 150
340 350 360 370
pF1KE5 YCWENFVYNDDEPFKPWKGLKYNFLFLDSKLQEILE
::::::::::.:::::::::: :: .: .:.: :.
CCDS13 YCWENFVYNDNEPFKPWKGLKTNFRLLKRRLRESLQ
160 170 180 190
>>CCDS41747.1 AICDA gene_id:57379|Hs108|chr12 (198 aa)
initn: 503 init1: 232 opt: 490 Z-score: 618.6 bits: 122.2 E(32554): 3.9e-28
Smith-Waterman score: 490; 43.1% identity (69.5% similar) in 174 aa overlap (200-372:11-180)
170 180 190 200 210 220
pF1KE5 WYKFDDNYAFLHRTLKEILRNPMEAMYPHIFYFHFKNLRKAYGRNESWLCFTMEVVKHHS
: ..:::.: : :: :..::.... .
CCDS41 MDSLLMNRRKFLYQFKNVRWAKGRRETYLCYVVKRRDSAT
10 20 30 40
230 240 250 260 270 280
pF1KE5 PISWKRGVFRNQVDPETHCHAERCFLSWFCDDILSPNTNYEVTWYTSWSPCPECAGEVAE
.: : .::. . ::.: :: .. : :.:. :.:::.:::::: .:: .::.
CCDS41 SFSLDFGYLRNK----NGCHVELLFLRYISDWDLDPGRCYRVTWFTSWSPCYDCARHVAD
50 60 70 80 90
290 300 310 320 330 340
pF1KE5 FLARHSNVNLTIFTARLYYFWDTDYQ-EGLRSLSQEGASVEIMGYKDFKYCWENFVYNDD
:: . :..: :::::::. : . :::: : . :... :: .::. :::..:: : .
CCDS41 FLRGNPNLSLRIFTARLYFCEDRKAEPEGLRRLHRAGVQIAIMTFKDYFYCWNTFVENHE
100 110 120 130 140 150
350 360 370
pF1KE5 EPFKPWKGLKYNFLFLDSKLQEILE
. :: :.::. : . :. .:..::
CCDS41 RTFKAWEGLHENSVRLSRQLRRILLPLYEVDDLRDAFRTLGL
160 170 180 190
>>CCDS33649.1 APOBEC3F gene_id:200316|Hs108|chr22 (101 aa)
initn: 424 init1: 407 opt: 420 Z-score: 535.0 bits: 105.8 E(32554): 1.8e-23
Smith-Waterman score: 420; 72.5% identity (78.0% similar) in 91 aa overlap (1-89:1-88)
10 20 30 40 50 60
pF1KE5 MKPHFRNTVERMYRDTFSYNFYNRPILSRRNTVWLCYEVKTKGPSRPRLDAKIFRGQVYS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 MKPHFRNTVERMYRDTFSYNFYNRPILSRRNTVWLCYEVKTKGPSRPRLDAKIFRGQV--
10 20 30 40 50
70 80 90 100 110
pF1KE5 QPEHHAEMCF--LSWFCGNQLPAYKCFQITWFVSWTPCPDCVAKLAEFLSEHPNVTLTIS
:. . : :: :. : . :. :
CCDS33 -PRSFIRAPFQVLSSPFGQCAPPHGTAQVQWPPQLTAGREQGRP
60 70 80 90 100
120 130 140 150 160 170
pF1KE5 AARLYYYWERDYRRALCRLSQAGARVKIMDDEEFAYCWENFVYSEGQPFMPWYKFDDNYA
>>CCDS4848.1 APOBEC2 gene_id:10930|Hs108|chr6 (224 aa)
initn: 545 init1: 219 opt: 402 Z-score: 507.6 bits: 101.8 E(32554): 6e-22
Smith-Waterman score: 402; 31.7% identity (68.3% similar) in 199 aa overlap (184-373:30-224)
160 170 180 190 200
pF1KE5 YCWENFVYSEGQPFMPWYKFDDNYAFLHRTLKEILRNPM------EAMYPHIFYFHFKNL
:::... : : . ..: :.:.:.
CCDS48 MAQKEEAAVATEAASQNGEDLENLDDPEKLKELIELPPFEIVTGERLPANFFKFQFRNV
10 20 30 40 50
210 220 230 240 250 260
pF1KE5 RKAYGRNESWLCFTMEVVKHHSPISWKRGVFRNQVDPETHCHAERCFLSWFCDDILSPNT
. . :::...::...:. . . .. .:: .. : .. :::. :.. . ..:
CCDS48 EYSSGRNKTFLCYVVEAQGKGGQVQASRGYLE---DEHAAAHAEEAFFNTILP-AFDPAL
60 70 80 90 100 110
270 280 290 300 310 320
pF1KE5 NYEVTWYTSWSPCPECAGEVAEFLARHSNVNLTIFTARLYYFWDTDYQEGLRSLSQEGAS
:.::::.: ::: :: .. . :.. .:. : :...::... . . : .:..:.. : .
CCDS48 RYNVTWYVSSSPCAACADRIIKTLSKTKNLRLLILVGRLFMWEEPEIQAALKKLKEAGCK
120 130 140 150 160 170
330 340 350 360 370
pF1KE5 VEIMGYKDFKYCWENFVYNDD---EPFKPWKGLKYNFLFLDSKLQEILE
..:: .::.: :.::: ... . :.::. .. :::. . :: .::.
CCDS48 LRIMKPQDFEYVWQNFVEQEEGESKAFQPWEDIQENFLYYEEKLADILK
180 190 200 210 220
>>CCDS54531.1 APOBEC3H gene_id:164668|Hs108|chr22 (182 aa)
initn: 373 init1: 329 opt: 388 Z-score: 491.3 bits: 98.5 E(32554): 4.8e-21
Smith-Waterman score: 388; 37.2% identity (62.2% similar) in 172 aa overlap (192-358:1-164)
170 180 190 200 210
pF1KE5 SEGQPFMPWYKFDDNYAFLHRTLKEILRNPMEAMYPHIFYFHFKN---LRKAYGRNESWL
: . . : ..:.: ::. : .. :
CCDS54 MALLTAETFRLQFNNKRRLRRPYYPRKALL
10 20 30
220 230 240 250 260 270
pF1KE5 CFTMEVVKHHSPISWKRGVFRNQVDPETHCHAERCFLSWFCDDILSPNTNYEVTWYTSWS
:. . . .: :: :.:. .:::: ::.. . . :. . :.:: : .::
CCDS54 CYQLTPQNGSTPT---RGYFENK----KKCHAEICFINEIKSMGLDETQCYQVTCYLTWS
40 50 60 70 80
280 290 300 310 320 330
pF1KE5 PCPECAGEVAEFLARHSNVNLTIFTARLYYFWDTDYQEGLRSLSQEGASVEIMGYKDFKY
:: :: :...:. :...:: ::..:::: : :.::: : . ::.::. .:
CCDS54 PCSSCAWELVDFIKAHDHLNLGIFASRLYYHWCKPQQKGLRLLCGSQVPVEVMGFPEFAD
90 100 110 120 130 140
340 350 360 370
pF1KE5 CWENFVYNDDEP--FKPWKGLKYNFLFLDSKLQEILE
:::::: . ..: :.:.: :.
CCDS54 CWENFV-DHEKPLSFNPYKMLEELDKNSRAIKRRLERIKS
150 160 170 180
373 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 01:37:40 2016 done: Tue Nov 8 01:37:40 2016
Total Scan time: 2.220 Total Display time: 0.020
Function used was FASTA [36.3.4 Apr, 2011]