FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5530, 430 aa
  1>>>pF1KE5530 430 - 430 aa - 430 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3961+/-0.000953; mu= 16.5701+/- 0.057
 mean_var=63.2064+/-12.789, 0's: 0 Z-trim(103.6): 15  B-trim: 0 in 0/47
 Lambda= 0.161322
 statistics sampled from 7466 (7469) to 7466 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.602), E-opt: 0.2 (0.229), width:  16
 Scan time:  2.800

The best scores are:                                      opt bits E(32554)
CCDS9391.1 LACC1 gene_id:144811|Hs108|chr13        ( 430) 2859 674.4 5.9e-194


>>CCDS9391.1 LACC1 gene_id:144811|Hs108|chr13             (430 aa)
 initn: 2859 init1: 2859 opt: 2859  Z-score: 3595.6  bits: 674.4 E(32554): 5.9e-194
Smith-Waterman score: 2859; 100.0% identity (100.0% similar) in 430 aa overlap (1-430:1-430)

               10        20        30        40        50        60
pF1KE5 MAEAVLIDLFGLKLNSQKNCHQTLLKTLNAVQYHHAAKAKFLCIMCCSNISYERDGEQDN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS93 MAEAVLIDLFGLKLNSQKNCHQTLLKTLNAVQYHHAAKAKFLCIMCCSNISYERDGEQDN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 CEIETSNGLSALLEEFEIVSCPSMAATLYTIKQKIDEKNLSSIKVIVPRHRKTLMKAFID
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS93 CEIETSNGLSALLEEFEIVSCPSMAATLYTIKQKIDEKNLSSIKVIVPRHRKTLMKAFID
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 QLFTDVYNFEFEDLQVTFRGGLFKQSIEINVITAQELRGIQNEIETFLRSLPALRGKLTI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS93 QLFTDVYNFEFEDLQVTFRGGLFKQSIEINVITAQELRGIQNEIETFLRSLPALRGKLTI
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE5 ITSSLIPDIFIHGFTTRTGGISYIPTLSSFNLFSSSKRRDPKVVVQENLRRLANAAGFNV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS93 ITSSLIPDIFIHGFTTRTGGISYIPTLSSFNLFSSSKRRDPKVVVQENLRRLANAAGFNV
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE5 EKFYRIKTHHSNDIWIMGRKEPDSYDGITTNQRGVTIAALGADCIPIVFADPVKKACGVA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS93 EKFYRIKTHHSNDIWIMGRKEPDSYDGITTNQRGVTIAALGADCIPIVFADPVKKACGVA
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE5 HAGWKGTLLGVAMATVNAMIAEYGCSLEDIVVVLGPSVGPCCFTLPRESAEAFHNLHPAC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS93 HAGWKGTLLGVAMATVNAMIAEYGCSLEDIVVVLGPSVGPCCFTLPRESAEAFHNLHPAC
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE5 VQLFDSPNPCIDIRKATRILLEQGGILPQNIQDQNQDLNLCTSCHPDKFFSHVRDGLNFG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS93 VQLFDSPNPCIDIRKATRILLEQGGILPQNIQDQNQDLNLCTSCHPDKFFSHVRDGLNFG
              370       380       390       400       410       420

              430
pF1KE5 TQIGFISIKE
       ::::::::::
CCDS93 TQIGFISIKE
              430




430 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 01:31:48 2016 done: Tue Nov  8 01:31:48 2016
 Total Scan time:  2.800 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]