FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5522, 357 aa
  1>>>pF1KE5522 357 - 357 aa - 357 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.8332+/-0.00044; mu= 13.5021+/- 0.027
 mean_var=67.9256+/-13.179, 0's: 0 Z-trim(109.7): 37  B-trim: 0 in 0/49
 Lambda= 0.155617
 statistics sampled from 17970 (17976) to 17970 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.573), E-opt: 0.2 (0.211), width:  16
 Scan time:  7.030

The best scores are:                                      opt bits E(85289)
NP_004205 (OMIM: 608296,617107) acidic fibroblast  ( 357) 2360 539.1 5.4e-153
NP_942600 (OMIM: 608296,617107) acidic fibroblast  ( 364) 2336 533.8 2.3e-151


>>NP_004205 (OMIM: 608296,617107) acidic fibroblast grow  (357 aa)
 initn: 2360 init1: 2360 opt: 2360  Z-score: 2867.6  bits: 539.1 E(85289): 5.4e-153
Smith-Waterman score: 2360; 100.0% identity (100.0% similar) in 357 aa overlap (1-357:1-357)

               10        20        30        40        50        60
pF1KE5 MTSELDIFVGNTTLIDEDVYRLWLDGYSVTDAVALRVRSGILEQTGATAAVLQSDTMDHY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 MTSELDIFVGNTTLIDEDVYRLWLDGYSVTDAVALRVRSGILEQTGATAAVLQSDTMDHY
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 RTFHMLERLLHAPPKLLHQLIFQIPPSRQALLIERYYAFDEAFVREVLGKKLSKGTKKDL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 RTFHMLERLLHAPPKLLHQLIFQIPPSRQALLIERYYAFDEAFVREVLGKKLSKGTKKDL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 DDISTKTGITLKSCRRQFDNFKRVFKVVEEMRGSLVDNIQQHFLLSDRLARDYAAIVFFA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 DDISTKTGITLKSCRRQFDNFKRVFKVVEEMRGSLVDNIQQHFLLSDRLARDYAAIVFFA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE5 NNRFETGKKKLQYLSFGDFAFCAELMIQNWTLGAVDSQMDDMDMDLDKEFLQDLKELKVL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 NNRFETGKKKLQYLSFGDFAFCAELMIQNWTLGAVDSQMDDMDMDLDKEFLQDLKELKVL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE5 VADKDLLDLHKSLVCTALRGKLGVFSEMEANFKNLSRGLVNVAAKLTHNKDVRDLFVDLV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 VADKDLLDLHKSLVCTALRGKLGVFSEMEANFKNLSRGLVNVAAKLTHNKDVRDLFVDLV
              250       260       270       280       290       300

              310       320       330       340       350       
pF1KE5 EKFVEPCRSDHWPLSDVRFFLNQYSASVHSLDGFRHQALWDRYMGTLRGCLLRLYHD
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 EKFVEPCRSDHWPLSDVRFFLNQYSASVHSLDGFRHQALWDRYMGTLRGCLLRLYHD
              310       320       330       340       350       

>>NP_942600 (OMIM: 608296,617107) acidic fibroblast grow  (364 aa)
 initn: 1436 init1: 1414 opt: 2336  Z-score: 2838.4  bits: 533.8 E(85289): 2.3e-151
Smith-Waterman score: 2336; 98.1% identity (98.1% similar) in 364 aa overlap (1-357:1-364)

               10        20        30        40        50        60
pF1KE5 MTSELDIFVGNTTLIDEDVYRLWLDGYSVTDAVALRVRSGILEQTGATAAVLQSDTMDHY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_942 MTSELDIFVGNTTLIDEDVYRLWLDGYSVTDAVALRVRSGILEQTGATAAVLQSDTMDHY
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 RTFHMLERLLHAPPKLLHQLIFQIPPSRQALLIERYYAFDEAFVREVLGKKLSKGTKKDL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_942 RTFHMLERLLHAPPKLLHQLIFQIPPSRQALLIERYYAFDEAFVREVLGKKLSKGTKKDL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 DDISTKTGITLKSCRRQFDNFKRVFKVVEEMRGSLVDNIQQHFLLSDRLARDYAAIVFFA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_942 DDISTKTGITLKSCRRQFDNFKRVFKVVEEMRGSLVDNIQQHFLLSDRLARDYAAIVFFA
              130       140       150       160       170       180

              190       200       210              220       230   
pF1KE5 NNRFETGKKKLQYLSFGDFAFCAELMIQNWTLGAV-------DSQMDDMDMDLDKEFLQD
       :::::::::::::::::::::::::::::::::::       ::::::::::::::::::
NP_942 NNRFETGKKKLQYLSFGDFAFCAELMIQNWTLGAVGEAPTDPDSQMDDMDMDLDKEFLQD
              190       200       210       220       230       240

           240       250       260       270       280       290   
pF1KE5 LKELKVLVADKDLLDLHKSLVCTALRGKLGVFSEMEANFKNLSRGLVNVAAKLTHNKDVR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_942 LKELKVLVADKDLLDLHKSLVCTALRGKLGVFSEMEANFKNLSRGLVNVAAKLTHNKDVR
              250       260       270       280       290       300

           300       310       320       330       340       350   
pF1KE5 DLFVDLVEKFVEPCRSDHWPLSDVRFFLNQYSASVHSLDGFRHQALWDRYMGTLRGCLLR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_942 DLFVDLVEKFVEPCRSDHWPLSDVRFFLNQYSASVHSLDGFRHQALWDRYMGTLRGCLLR
              310       320       330       340       350       360

           
pF1KE5 LYHD
       ::::
NP_942 LYHD
           




357 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 01:27:44 2016 done: Tue Nov  8 01:27:45 2016
 Total Scan time:  7.030 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]