Result of FASTA (ccds) for
pFN21AE5520
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE5520, 464 aa
1>>>pF1KE5520 464 - 464 aa - 464 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.4938+/- 0.001; mu= 16.2287+/- 0.060
mean_var=65.8162+/-13.068, 0's: 0 Z-trim(104.0): 76 B-trim: 0 in 0/49
Lambda= 0.158091
statistics sampled from 7606 (7685) to 7606 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.603), E-opt: 0.2 (0.236), width: 16
Scan time: 2.020
The best scores are: opt bits E(32554)
CCDS3822.1 GLRA3 gene_id:8001|Hs108|chr4 ( 464) 3128 722.7 2e-208
CCDS54942.1 GLRA1 gene_id:2741|Hs108|chr5 ( 457) 2504 580.3 1.4e-165
CCDS43283.1 GLRA3 gene_id:8001|Hs108|chr4 ( 449) 2391 554.6 7.8e-158
CCDS4320.1 GLRA1 gene_id:2741|Hs108|chr5 ( 449) 2387 553.7 1.5e-157
CCDS48085.1 GLRA2 gene_id:2742|Hs108|chrX ( 452) 2030 472.2 4.8e-133
CCDS14160.1 GLRA2 gene_id:2742|Hs108|chrX ( 452) 2024 470.9 1.2e-132
CCDS43980.2 GLRA4 gene_id:441509|Hs108|chrX ( 417) 1982 461.3 8.8e-130
CCDS55371.1 GLRA2 gene_id:2742|Hs108|chrX ( 363) 1696 396.0 3.4e-110
CCDS3796.1 GLRB gene_id:2743|Hs108|chr4 ( 497) 1218 287.0 2.9e-77
CCDS54813.1 GLRB gene_id:2743|Hs108|chr4 ( 303) 1040 246.4 3.2e-65
CCDS4356.1 GABRA6 gene_id:2559|Hs108|chr5 ( 453) 978 232.3 8.1e-61
CCDS36.1 GABRD gene_id:2563|Hs108|chr1 ( 452) 965 229.3 6.3e-60
CCDS3471.1 GABRA2 gene_id:2555|Hs108|chr4 ( 451) 963 228.9 8.6e-60
CCDS10018.1 GABRB3 gene_id:2562|Hs108|chr15 ( 473) 943 224.3 2.1e-58
CCDS10019.1 GABRB3 gene_id:2562|Hs108|chr15 ( 473) 940 223.6 3.4e-58
CCDS4354.1 GABRB2 gene_id:2561|Hs108|chr5 ( 474) 940 223.6 3.4e-58
CCDS4355.1 GABRB2 gene_id:2561|Hs108|chr5 ( 512) 940 223.6 3.7e-58
CCDS4357.1 GABRA1 gene_id:2554|Hs108|chr5 ( 456) 939 223.4 3.9e-58
CCDS5020.3 GABRR2 gene_id:2570|Hs108|chr6 ( 465) 939 223.4 3.9e-58
CCDS4375.1 GABRP gene_id:2568|Hs108|chr5 ( 440) 937 222.9 5.2e-58
CCDS4358.1 GABRG2 gene_id:2566|Hs108|chr5 ( 467) 934 222.3 8.7e-58
CCDS14706.1 GABRA3 gene_id:2556|Hs108|chrX ( 492) 929 221.1 2e-57
CCDS3474.1 GABRB1 gene_id:2560|Hs108|chr4 ( 474) 928 220.9 2.3e-57
CCDS59029.1 GABRR1 gene_id:2569|Hs108|chr6 ( 462) 927 220.7 2.6e-57
CCDS5019.2 GABRR1 gene_id:2569|Hs108|chr6 ( 479) 927 220.7 2.7e-57
CCDS3470.1 GABRG1 gene_id:2565|Hs108|chr4 ( 465) 925 220.2 3.6e-57
CCDS54617.1 GABRR3 gene_id:200959|Hs108|chr3 ( 467) 923 219.8 5e-57
CCDS4359.1 GABRG2 gene_id:2566|Hs108|chr5 ( 475) 921 219.3 6.9e-57
CCDS59028.1 GABRR1 gene_id:2569|Hs108|chr6 ( 392) 907 216.1 5.4e-56
CCDS45194.1 GABRA5 gene_id:2558|Hs108|chr15 ( 462) 901 214.7 1.6e-55
CCDS3473.1 GABRA4 gene_id:2557|Hs108|chr4 ( 554) 899 214.3 2.6e-55
CCDS82921.1 GABRA2 gene_id:2555|Hs108|chr4 ( 511) 884 210.9 2.6e-54
CCDS14707.1 GABRQ gene_id:55879|Hs108|chrX ( 632) 861 205.7 1.2e-52
CCDS45195.1 GABRG3 gene_id:2567|Hs108|chr15 ( 467) 845 202.0 1.1e-51
CCDS53921.1 GABRB3 gene_id:2562|Hs108|chr15 ( 402) 815 195.1 1.1e-49
CCDS53920.1 GABRB3 gene_id:2562|Hs108|chr15 ( 388) 795 190.5 2.6e-48
CCDS14703.1 GABRE gene_id:2564|Hs108|chrX ( 506) 776 186.2 6.6e-47
CCDS75368.1 GABRP gene_id:2568|Hs108|chr5 ( 289) 692 167.0 2.4e-41
CCDS47333.1 GABRG2 gene_id:2566|Hs108|chr5 ( 515) 525 129.0 1.1e-29
CCDS59251.1 GABRG3 gene_id:2567|Hs108|chr15 ( 253) 427 106.5 3.3e-23
CCDS6135.1 CHRNA6 gene_id:8973|Hs108|chr8 ( 494) 305 78.8 1.4e-14
CCDS8365.2 HTR3A gene_id:3359|Hs108|chr11 ( 484) 299 77.4 3.6e-14
CCDS3459.1 CHRNA9 gene_id:55584|Hs108|chr4 ( 479) 292 75.8 1.1e-13
CCDS53710.1 HTR3A gene_id:3359|Hs108|chr11 ( 463) 282 73.6 5e-13
CCDS2261.1 CHRNA1 gene_id:1134|Hs108|chr2 ( 457) 280 73.1 6.8e-13
CCDS8366.2 HTR3A gene_id:3359|Hs108|chr11 ( 516) 276 72.2 1.4e-12
CCDS6134.1 CHRNB3 gene_id:1142|Hs108|chr8 ( 458) 263 69.2 1e-11
CCDS53924.1 CHRNA7 gene_id:1139|Hs108|chr15 ( 531) 262 69.0 1.3e-11
CCDS53964.1 CHRNA3 gene_id:1136|Hs108|chr15 ( 489) 261 68.8 1.5e-11
CCDS10306.1 CHRNB4 gene_id:1143|Hs108|chr15 ( 498) 261 68.8 1.5e-11
>>CCDS3822.1 GLRA3 gene_id:8001|Hs108|chr4 (464 aa)
initn: 3128 init1: 3128 opt: 3128 Z-score: 3855.3 bits: 722.7 E(32554): 2e-208
Smith-Waterman score: 3128; 100.0% identity (100.0% similar) in 464 aa overlap (1-464:1-464)
10 20 30 40 50 60
pF1KE5 MAHVRHFRTLVSGFYFWEAALLLSLVATKETDSARSRSAPMSPSDFLDKLMGRTSGYDAR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS38 MAHVRHFRTLVSGFYFWEAALLLSLVATKETDSARSRSAPMSPSDFLDKLMGRTSGYDAR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 IRPNFKGPPVNVTCNIFINSFGSIAETTMDYRVNIFLRQKWNDPRLAYSEYPDDSLDLDP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS38 IRPNFKGPPVNVTCNIFINSFGSIAETTMDYRVNIFLRQKWNDPRLAYSEYPDDSLDLDP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE5 SMLDSIWKPDLFFANEKGANFHEVTTDNKLLRIFKNGNVLYSIRLTLTLSCPMDLKNFPM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS38 SMLDSIWKPDLFFANEKGANFHEVTTDNKLLRIFKNGNVLYSIRLTLTLSCPMDLKNFPM
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE5 DVQTCIMQLESFGYTMNDLIFEWQDEAPVQVAEGLTLPQFLLKEEKDLRYCTKHYNTGKF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS38 DVQTCIMQLESFGYTMNDLIFEWQDEAPVQVAEGLTLPQFLLKEEKDLRYCTKHYNTGKF
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE5 TCIEVRFHLERQMGYYLIQMYIPSLLIVILSWVSFWINMDAAPARVALGITTVLTMTTQS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS38 TCIEVRFHLERQMGYYLIQMYIPSLLIVILSWVSFWINMDAAPARVALGITTVLTMTTQS
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE5 SGSRASLPKVSYVKAIDIWMAVCLLFVFSALLEYAAVNFVSRQHKELLRFRRKRKNKTEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS38 SGSRASLPKVSYVKAIDIWMAVCLLFVFSALLEYAAVNFVSRQHKELLRFRRKRKNKTEA
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE5 FALEKFYRFSDMDDEVRESRFSFTAYGMGPCLQAKDGMTPKGPNHPVQVMPKSPDEMRKV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS38 FALEKFYRFSDMDDEVRESRFSFTAYGMGPCLQAKDGMTPKGPNHPVQVMPKSPDEMRKV
370 380 390 400 410 420
430 440 450 460
pF1KE5 FIDRAKKIDTISRACFPLAFLIFNIFYWVIYKILRHEDIHQQQD
::::::::::::::::::::::::::::::::::::::::::::
CCDS38 FIDRAKKIDTISRACFPLAFLIFNIFYWVIYKILRHEDIHQQQD
430 440 450 460
>>CCDS54942.1 GLRA1 gene_id:2741|Hs108|chr5 (457 aa)
initn: 2457 init1: 2320 opt: 2504 Z-score: 3086.3 bits: 580.3 E(32554): 1.4e-165
Smith-Waterman score: 2504; 81.5% identity (93.2% similar) in 455 aa overlap (14-462:9-457)
10 20 30 40 50 60
pF1KE5 MAHVRHFRTLVSGFYFWEAALLLSLVATKETDSARSRSAPMSPSDFLDKLMGRTSGYDAR
.:.::. ...::.:.::...::: :::::::::::::::::::::
CCDS54 MYSFNTLRLYLWETIVFFSLAASKEAEAARSAPKPMSPSDFLDKLMGRTSGYDAR
10 20 30 40 50
70 80 90 100 110 120
pF1KE5 IRPNFKGPPVNVTCNIFINSFGSIAETTMDYRVNIFLRQKWNDPRLAYSEYPDDSLDLDP
::::::::::::.::::::::::::::::::::::::::.::::::::.:::::::::::
CCDS54 IRPNFKGPPVNVSCNIFINSFGSIAETTMDYRVNIFLRQQWNDPRLAYNEYPDDSLDLDP
60 70 80 90 100 110
130 140 150 160 170 180
pF1KE5 SMLDSIWKPDLFFANEKGANFHEVTTDNKLLRIFKNGNVLYSIRLTLTLSCPMDLKNFPM
:::::::::::::::::::.:::.::::::::: .:::::::::.::::.::::::::::
CCDS54 SMLDSIWKPDLFFANEKGAHFHEITTDNKLLRISRNGNVLYSIRITLTLACPMDLKNFPM
120 130 140 150 160 170
190 200 210 220 230 240
pF1KE5 DVQTCIMQLESFGYTMNDLIFEWQDEAPVQVAEGLTLPQFLLKEEKDLRYCTKHYNTGKF
::::::::::::::::::::::::... ::::.:::::::.:::::::::::::::::::
CCDS54 DVQTCIMQLESFGYTMNDLIFEWQEQGAVQVADGLTLPQFILKEEKDLRYCTKHYNTGKF
180 190 200 210 220 230
250 260 270 280 290 300
pF1KE5 TCIEVRFHLERQMGYYLIQMYIPSLLIVILSWVSFWINMDAAPARVALGITTVLTMTTQS
::::.:::::::::::::::::::::::::::.:::::::::::::.:::::::::::::
CCDS54 TCIEARFHLERQMGYYLIQMYIPSLLIVILSWISFWINMDAAPARVGLGITTVLTMTTQS
240 250 260 270 280 290
310 320 330 340 350 360
pF1KE5 SGSRASLPKVSYVKAIDIWMAVCLLFVFSALLEYAAVNFVSRQHKELLRFRRKRKNKTEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::... ..
CCDS54 SGSRASLPKVSYVKAIDIWMAVCLLFVFSALLEYAAVNFVSRQHKELLRFRRKRRHH-KS
300 310 320 330 340 350
370 380 390 400 410
pF1KE5 FALEKFYRFSDMDDEVRESRFSFTAYGMGP-CLQAKDGMTPKGPNHPVQVMP-----KSP
:. : ..::. :.::.:.:::::: :::::::.. :: :. . : :::
CCDS54 PMLNLF-----QEDEAGEGRFNFSAYGMGPACLQAKDGISVKGANNSNTTNPPPAPSKSP
360 370 380 390 400
420 430 440 450 460
pF1KE5 DEMRKVFIDRAKKIDTISRACFPLAFLIFNIFYWVIYKILRHEDIHQQQD
.::::.::.:::::: ::: ::.::::::.:::.::::.:.::.:.:
CCDS54 EEMRKLFIQRAKKIDKISRIGFPMAFLIFNMFYWIIYKIVRREDVHNQ
410 420 430 440 450
>>CCDS43283.1 GLRA3 gene_id:8001|Hs108|chr4 (449 aa)
initn: 2385 init1: 2385 opt: 2391 Z-score: 2947.1 bits: 554.6 E(32554): 7.8e-158
Smith-Waterman score: 2991; 96.8% identity (96.8% similar) in 464 aa overlap (1-464:1-449)
10 20 30 40 50 60
pF1KE5 MAHVRHFRTLVSGFYFWEAALLLSLVATKETDSARSRSAPMSPSDFLDKLMGRTSGYDAR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 MAHVRHFRTLVSGFYFWEAALLLSLVATKETDSARSRSAPMSPSDFLDKLMGRTSGYDAR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 IRPNFKGPPVNVTCNIFINSFGSIAETTMDYRVNIFLRQKWNDPRLAYSEYPDDSLDLDP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 IRPNFKGPPVNVTCNIFINSFGSIAETTMDYRVNIFLRQKWNDPRLAYSEYPDDSLDLDP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE5 SMLDSIWKPDLFFANEKGANFHEVTTDNKLLRIFKNGNVLYSIRLTLTLSCPMDLKNFPM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 SMLDSIWKPDLFFANEKGANFHEVTTDNKLLRIFKNGNVLYSIRLTLTLSCPMDLKNFPM
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE5 DVQTCIMQLESFGYTMNDLIFEWQDEAPVQVAEGLTLPQFLLKEEKDLRYCTKHYNTGKF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 DVQTCIMQLESFGYTMNDLIFEWQDEAPVQVAEGLTLPQFLLKEEKDLRYCTKHYNTGKF
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE5 TCIEVRFHLERQMGYYLIQMYIPSLLIVILSWVSFWINMDAAPARVALGITTVLTMTTQS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 TCIEVRFHLERQMGYYLIQMYIPSLLIVILSWVSFWINMDAAPARVALGITTVLTMTTQS
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE5 SGSRASLPKVSYVKAIDIWMAVCLLFVFSALLEYAAVNFVSRQHKELLRFRRKRKNKTEA
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 SGSRASLPKVSYVKAIDIWMAVCLLFVFSALLEYAAVNFVSRQHKELLRFRRKRKNK---
310 320 330 340 350
370 380 390 400 410 420
pF1KE5 FALEKFYRFSDMDDEVRESRFSFTAYGMGPCLQAKDGMTPKGPNHPVQVMPKSPDEMRKV
::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 ------------DDEVRESRFSFTAYGMGPCLQAKDGMTPKGPNHPVQVMPKSPDEMRKV
360 370 380 390 400
430 440 450 460
pF1KE5 FIDRAKKIDTISRACFPLAFLIFNIFYWVIYKILRHEDIHQQQD
::::::::::::::::::::::::::::::::::::::::::::
CCDS43 FIDRAKKIDTISRACFPLAFLIFNIFYWVIYKILRHEDIHQQQD
410 420 430 440
>>CCDS4320.1 GLRA1 gene_id:2741|Hs108|chr5 (449 aa)
initn: 2457 init1: 2136 opt: 2387 Z-score: 2942.2 bits: 553.7 E(32554): 1.5e-157
Smith-Waterman score: 2494; 81.3% identity (91.9% similar) in 455 aa overlap (14-462:9-449)
10 20 30 40 50 60
pF1KE5 MAHVRHFRTLVSGFYFWEAALLLSLVATKETDSARSRSAPMSPSDFLDKLMGRTSGYDAR
.:.::. ...::.:.::...::: :::::::::::::::::::::
CCDS43 MYSFNTLRLYLWETIVFFSLAASKEAEAARSAPKPMSPSDFLDKLMGRTSGYDAR
10 20 30 40 50
70 80 90 100 110 120
pF1KE5 IRPNFKGPPVNVTCNIFINSFGSIAETTMDYRVNIFLRQKWNDPRLAYSEYPDDSLDLDP
::::::::::::.::::::::::::::::::::::::::.::::::::.:::::::::::
CCDS43 IRPNFKGPPVNVSCNIFINSFGSIAETTMDYRVNIFLRQQWNDPRLAYNEYPDDSLDLDP
60 70 80 90 100 110
130 140 150 160 170 180
pF1KE5 SMLDSIWKPDLFFANEKGANFHEVTTDNKLLRIFKNGNVLYSIRLTLTLSCPMDLKNFPM
:::::::::::::::::::.:::.::::::::: .:::::::::.::::.::::::::::
CCDS43 SMLDSIWKPDLFFANEKGAHFHEITTDNKLLRISRNGNVLYSIRITLTLACPMDLKNFPM
120 130 140 150 160 170
190 200 210 220 230 240
pF1KE5 DVQTCIMQLESFGYTMNDLIFEWQDEAPVQVAEGLTLPQFLLKEEKDLRYCTKHYNTGKF
::::::::::::::::::::::::... ::::.:::::::.:::::::::::::::::::
CCDS43 DVQTCIMQLESFGYTMNDLIFEWQEQGAVQVADGLTLPQFILKEEKDLRYCTKHYNTGKF
180 190 200 210 220 230
250 260 270 280 290 300
pF1KE5 TCIEVRFHLERQMGYYLIQMYIPSLLIVILSWVSFWINMDAAPARVALGITTVLTMTTQS
::::.:::::::::::::::::::::::::::.:::::::::::::.:::::::::::::
CCDS43 TCIEARFHLERQMGYYLIQMYIPSLLIVILSWISFWINMDAAPARVGLGITTVLTMTTQS
240 250 260 270 280 290
310 320 330 340 350 360
pF1KE5 SGSRASLPKVSYVKAIDIWMAVCLLFVFSALLEYAAVNFVSRQHKELLRFRRKRKNKTEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::... :
CCDS43 SGSRASLPKVSYVKAIDIWMAVCLLFVFSALLEYAAVNFVSRQHKELLRFRRKRRHHKE-
300 310 320 330 340 350
370 380 390 400 410
pF1KE5 FALEKFYRFSDMDDEVRESRFSFTAYGMGP-CLQAKDGMTPKGPNHPVQVMP-----KSP
::. :.::.:.:::::: :::::::.. :: :. . : :::
CCDS43 -------------DEAGEGRFNFSAYGMGPACLQAKDGISVKGANNSNTTNPPPAPSKSP
360 370 380 390 400
420 430 440 450 460
pF1KE5 DEMRKVFIDRAKKIDTISRACFPLAFLIFNIFYWVIYKILRHEDIHQQQD
.::::.::.:::::: ::: ::.::::::.:::.::::.:.::.:.:
CCDS43 EEMRKLFIQRAKKIDKISRIGFPMAFLIFNMFYWIIYKIVRREDVHNQ
410 420 430 440
>>CCDS48085.1 GLRA2 gene_id:2742|Hs108|chrX (452 aa)
initn: 2388 init1: 2015 opt: 2030 Z-score: 2502.1 bits: 472.2 E(32554): 4.8e-133
Smith-Waterman score: 2387; 78.8% identity (88.8% similar) in 457 aa overlap (9-462:10-452)
10 20 30 40 50
pF1KE5 MAHVRHFRTLVSGFYFWEAALLLSLVATKETDSARSRSAPMSPSDFLDKLMGRTSGYDA
: . .:.. . .. ... :... : .::::::::::::::::::
CCDS48 MNRQLVNILTALFAFFLETNHFRTAFCKDHDSRSGKQPSQTLSPSDFLDKLMGRTSGYDA
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE5 RIRPNFKGPPVNVTCNIFINSFGSIAETTMDYRVNIFLRQKWNDPRLAYSEYPDDSLDLD
::::::::::::::::::::::::::::::::::::::::.::: :::::::::::::::
CCDS48 RIRPNFKGPPVNVTCNIFINSFGSIAETTMDYRVNIFLRQQWNDSRLAYSEYPDDSLDLD
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE5 PSMLDSIWKPDLFFANEKGANFHEVTTDNKLLRIFKNGNVLYSIRLTLTLSCPMDLKNFP
:::::::::::::::::::::::.:::::::::: :::.:::::::::::::::::::::
CCDS48 PSMLDSIWKPDLFFANEKGANFHDVTTDNKLLRISKNGKVLYSIRLTLTLSCPMDLKNFP
130 140 150 160 170 180
180 190 200 210 220 230
pF1KE5 MDVQTCIMQLESFGYTMNDLIFEWQDEAPVQVAEGLTLPQFLLKEEKDLRYCTKHYNTGK
:::::: ::::::::::::::::: ...:::::::::::::.:::::.: ::::::::::
CCDS48 MDVQTCTMQLESFGYTMNDLIFEWLSDGPVQVAEGLTLPQFILKEEKELGYCTKHYNTGK
190 200 210 220 230 240
240 250 260 270 280 290
pF1KE5 FTCIEVRFHLERQMGYYLIQMYIPSLLIVILSWVSFWINMDAAPARVALGITTVLTMTTQ
::::::.:::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 FTCIEVKFHLERQMGYYLIQMYIPSLLIVILSWVSFWINMDAAPARVALGITTVLTMTTQ
250 260 270 280 290 300
300 310 320 330 340 350
pF1KE5 SSGSRASLPKVSYVKAIDIWMAVCLLFVFSALLEYAAVNFVSRQHKELLRFRR--KRKNK
:::::::::::::::::::::::::::::.:::::::::::::::::.::.:: ::.::
CCDS48 SSGSRASLPKVSYVKAIDIWMAVCLLFVFAALLEYAAVNFVSRQHKEFLRLRRRQKRQNK
310 320 330 340 350 360
360 370 380 390 400 410
pF1KE5 TEAFALEKFYRFSDMDDEVRESRFSFTAYGMGPCLQAKDGMTPKG-PNHPVQVMPKSPDE
: : .:::::.:..:::: :::.::: . :. : .:. ::. :
CCDS48 EE--------------DVTRESRFNFSGYGMGHCLQVKDGTAVKATPANPLPQPPKDGDA
370 380 390 400
420 430 440 450 460
pF1KE5 MRKVFIDRAKKIDTISRACFPLAFLIFNIFYWVIYKILRHEDIHQQQD
..: :.::::.::::::: :::::::::::::. :::.::::.:..
CCDS48 IKKKFVDRAKRIDTISRAAFPLAFLIFNIFYWITYKIIRHEDVHKK
410 420 430 440 450
>>CCDS14160.1 GLRA2 gene_id:2742|Hs108|chrX (452 aa)
initn: 2382 init1: 2009 opt: 2024 Z-score: 2494.7 bits: 470.9 E(32554): 1.2e-132
Smith-Waterman score: 2381; 78.3% identity (88.8% similar) in 457 aa overlap (9-462:10-452)
10 20 30 40 50
pF1KE5 MAHVRHFRTLVSGFYFWEAALLLSLVATKETDSARSRSAPMSPSDFLDKLMGRTSGYDA
: . .:.. . .. ... :... : .::::::::::::::::::
CCDS14 MNRQLVNILTALFAFFLETNHFRTAFCKDHDSRSGKQPSQTLSPSDFLDKLMGRTSGYDA
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE5 RIRPNFKGPPVNVTCNIFINSFGSIAETTMDYRVNIFLRQKWNDPRLAYSEYPDDSLDLD
::::::::::::::::::::::::..::::::::::::::.::: :::::::::::::::
CCDS14 RIRPNFKGPPVNVTCNIFINSFGSVTETTMDYRVNIFLRQQWNDSRLAYSEYPDDSLDLD
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE5 PSMLDSIWKPDLFFANEKGANFHEVTTDNKLLRIFKNGNVLYSIRLTLTLSCPMDLKNFP
:::::::::::::::::::::::.:::::::::: :::.:::::::::::::::::::::
CCDS14 PSMLDSIWKPDLFFANEKGANFHDVTTDNKLLRISKNGKVLYSIRLTLTLSCPMDLKNFP
130 140 150 160 170 180
180 190 200 210 220 230
pF1KE5 MDVQTCIMQLESFGYTMNDLIFEWQDEAPVQVAEGLTLPQFLLKEEKDLRYCTKHYNTGK
:::::: ::::::::::::::::: ...:::::::::::::.:::::.: ::::::::::
CCDS14 MDVQTCTMQLESFGYTMNDLIFEWLSDGPVQVAEGLTLPQFILKEEKELGYCTKHYNTGK
190 200 210 220 230 240
240 250 260 270 280 290
pF1KE5 FTCIEVRFHLERQMGYYLIQMYIPSLLIVILSWVSFWINMDAAPARVALGITTVLTMTTQ
::::::.:::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 FTCIEVKFHLERQMGYYLIQMYIPSLLIVILSWVSFWINMDAAPARVALGITTVLTMTTQ
250 260 270 280 290 300
300 310 320 330 340 350
pF1KE5 SSGSRASLPKVSYVKAIDIWMAVCLLFVFSALLEYAAVNFVSRQHKELLRFRR--KRKNK
:::::::::::::::::::::::::::::.:::::::::::::::::.::.:: ::.::
CCDS14 SSGSRASLPKVSYVKAIDIWMAVCLLFVFAALLEYAAVNFVSRQHKEFLRLRRRQKRQNK
310 320 330 340 350 360
360 370 380 390 400 410
pF1KE5 TEAFALEKFYRFSDMDDEVRESRFSFTAYGMGPCLQAKDGMTPKG-PNHPVQVMPKSPDE
: : .:::::.:..:::: :::.::: . :. : .:. ::. :
CCDS14 EE--------------DVTRESRFNFSGYGMGHCLQVKDGTAVKATPANPLPQPPKDGDA
370 380 390 400
420 430 440 450 460
pF1KE5 MRKVFIDRAKKIDTISRACFPLAFLIFNIFYWVIYKILRHEDIHQQQD
..: :.::::.::::::: :::::::::::::. :::.::::.:..
CCDS14 IKKKFVDRAKRIDTISRAAFPLAFLIFNIFYWITYKIIRHEDVHKK
410 420 430 440 450
>>CCDS43980.2 GLRA4 gene_id:441509|Hs108|chrX (417 aa)
initn: 1202 init1: 1100 opt: 1982 Z-score: 2443.5 bits: 461.3 E(32554): 8.8e-130
Smith-Waterman score: 2078; 76.8% identity (88.0% similar) in 409 aa overlap (21-423:22-417)
10 20 30 40 50
pF1KE5 MAHVRHFRTLVSGFYFWEAALLLSLVATKETDSARSRSAPMSPSDFLDKLMGRTSGYDA
:: .: .:. :. . : ::::::::::::::::::::
CCDS43 MTTLVPATLSFLLLWTLPGQVLLRVALAKEEVKSGTKGSQPMSPSDFLDKLMGRTSGYDA
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE5 RIRPNFKGPPVNVTCNIFINSFGSIAETTMDYRVNIFLRQKWNDPRLAYSEYPDDSLDLD
::::::::::::::::::::::.::..::::::::.::::.::::::.: ::::::::::
CCDS43 RIRPNFKGPPVNVTCNIFINSFSSITKTTMDYRVNVFLRQQWNDPRLSYREYPDDSLDLD
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE5 PSMLDSIWKPDLFFANEKGANFHEVTTDNKLLRIFKNGNVLYSIRLTLTLSCPMDLKNFP
:::::::::::::::::::::::::::::::::::::::::::::::: ::: :::::::
CCDS43 PSMLDSIWKPDLFFANEKGANFHEVTTDNKLLRIFKNGNVLYSIRLTLILSCLMDLKNFP
130 140 150 160 170 180
180 190 200 210 220 230
pF1KE5 MDVQTCIMQLESFGYTMNDLIFEWQDEAP-VQVAEGLTLPQFLLKEEKDLRYCTKHYNTG
::.::: ::::::::::.::.::: ..:: ::::::::::::.:..:::: ::::::::
CCDS43 MDIQTCTMQLESFGYTMKDLVFEWLEDAPAVQVAEGLTLPQFILRDEKDLGCCTKHYNTG
190 200 210 220 230 240
240 250 260 270 280 290
pF1KE5 KFTCIEVRFHLERQMGYYLIQMYIPSLLIVILSWVSFWINMDAAPARVALGITTVLTMTT
:::::::.::::::::::::::::::::::::::::::::::::::::.:::::::::::
CCDS43 KFTCIEVKFHLERQMGYYLIQMYIPSLLIVILSWVSFWINMDAAPARVGLGITTVLTMTT
250 260 270 280 290 300
300 310 320 330 340 350
pF1KE5 QSSGSRASLPKVSYVKAIDIWMAVCLLFVFSALLEYAAVNFVSRQHKELLRFRRKRKNKT
::::::::::::::::::::::::::::::.:::::::.:::::::::..:.::... .
CCDS43 QSSGSRASLPKVSYVKAIDIWMAVCLLFVFAALLEYAAINFVSRQHKEFIRLRRRQRRQR
310 320 330 340 350 360
360 370 380 390 400 410
pF1KE5 EAFALEKFYRFSDMDDEVRESRFSFTAYGMGPCLQAKDGMTPKG-----PNHPVQVMPKS
:: .: ..:::: : .::.: ::::.:: .: :. :. .. .
CCDS43 ----LE--------EDIIQESRFYFRGYGLGHCLQARDGGPMEGSGIYSPQPPAPLL-RE
370 380 390 400
420 430 440 450 460
pF1KE5 PDEMRKVFIDRAKKIDTISRACFPLAFLIFNIFYWVIYKILRHEDIHQQQD
. ::...:
CCDS43 GETTRKLYVD
410
>>CCDS55371.1 GLRA2 gene_id:2742|Hs108|chrX (363 aa)
initn: 2057 init1: 1684 opt: 1696 Z-score: 2091.9 bits: 396.0 E(32554): 3.4e-110
Smith-Waterman score: 2053; 82.0% identity (90.5% similar) in 377 aa overlap (89-462:1-363)
60 70 80 90 100 110
pF1KE5 ARIRPNFKGPPVNVTCNIFINSFGSIAETTMDYRVNIFLRQKWNDPRLAYSEYPDDSLDL
:::::::::::.::: ::::::::::::::
CCDS55 MDYRVNIFLRQQWNDSRLAYSEYPDDSLDL
10 20 30
120 130 140 150 160 170
pF1KE5 DPSMLDSIWKPDLFFANEKGANFHEVTTDNKLLRIFKNGNVLYSIRLTLTLSCPMDLKNF
::::::::::::::::::::::::.:::::::::: :::.::::::::::::::::::::
CCDS55 DPSMLDSIWKPDLFFANEKGANFHDVTTDNKLLRISKNGKVLYSIRLTLTLSCPMDLKNF
40 50 60 70 80 90
180 190 200 210 220 230
pF1KE5 PMDVQTCIMQLESFGYTMNDLIFEWQDEAPVQVAEGLTLPQFLLKEEKDLRYCTKHYNTG
::::::: ::::::::::::::::: ...:::::::::::::.:::::.: :::::::::
CCDS55 PMDVQTCTMQLESFGYTMNDLIFEWLSDGPVQVAEGLTLPQFILKEEKELGYCTKHYNTG
100 110 120 130 140 150
240 250 260 270 280 290
pF1KE5 KFTCIEVRFHLERQMGYYLIQMYIPSLLIVILSWVSFWINMDAAPARVALGITTVLTMTT
:::::::.::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 KFTCIEVKFHLERQMGYYLIQMYIPSLLIVILSWVSFWINMDAAPARVALGITTVLTMTT
160 170 180 190 200 210
300 310 320 330 340 350
pF1KE5 QSSGSRASLPKVSYVKAIDIWMAVCLLFVFSALLEYAAVNFVSRQHKELLRFRR--KRKN
::::::::::::::::::::::::::::::.:::::::::::::::::.::.:: ::.:
CCDS55 QSSGSRASLPKVSYVKAIDIWMAVCLLFVFAALLEYAAVNFVSRQHKEFLRLRRRQKRQN
220 230 240 250 260 270
360 370 380 390 400 410
pF1KE5 KTEAFALEKFYRFSDMDDEVRESRFSFTAYGMGPCLQAKDGMTPKG-PNHPVQVMPKSPD
: : : .:::::.:..:::: :::.::: . :. : .:. ::. :
CCDS55 KEE--------------DVTRESRFNFSGYGMGHCLQVKDGTAVKATPANPLPQPPKDGD
280 290 300 310
420 430 440 450 460
pF1KE5 EMRKVFIDRAKKIDTISRACFPLAFLIFNIFYWVIYKILRHEDIHQQQD
..: :.::::.::::::: :::::::::::::. :::.::::.:..
CCDS55 AIKKKFVDRAKRIDTISRAAFPLAFLIFNIFYWITYKIIRHEDVHKK
320 330 340 350 360
>>CCDS3796.1 GLRB gene_id:2743|Hs108|chr4 (497 aa)
initn: 1264 init1: 468 opt: 1218 Z-score: 1500.6 bits: 287.0 E(32554): 2.9e-77
Smith-Waterman score: 1278; 46.9% identity (68.3% similar) in 467 aa overlap (25-451:38-496)
10 20 30 40 50
pF1KE5 MAHVRHFRTLVSGFYFWEAALLLSLVATKETDSARSRSAPMSPSDFLDKLMGRT
: .... .: : :..:..:.
CCDS37 AFLILISLWVEEAYSKEKSSKKGKGKKKQYLCPSQQSAEDLARVPANSTSNILNRLL---
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE5 SGYDARIRPNFKGPPVNVTCNIFINSFGSIAETTMDYRVNIFLRQKWNDPRLAY-SEY-P
.:: :::::::: ::.:. :::::::::: ::::::::::::::::::::: :..
CCDS37 VSYDPRIRPNFKGIPVDVVVNIFINSFGSIQETTMDYRVNIFLRQKWNDPRLKLPSDFRG
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE5 DDSLDLDPSMLDSIWKPDLFFANEKGANFHEVTTDNKLLRIFKNGNVLYSIRLTLTLSCP
.:.: .::.: .:::::::::::.::::.:: .: :: ::..:.:: :.::..:::::
CCDS37 SDALTVDPTMYKCLWKPDLFFANEKSANFHDVTQENILLFIFRDGDVLVSMRLSITLSCP
130 140 150 160 170 180
180 190 200 210 220 230
pF1KE5 MDLKNFPMDVQTCIMQLESFGYTMNDLIFEWQDEAPVQVAEGLTLPQFLLKEEKDLRY--
.:: ::::.: : ::::::::: .:: : ::. :::. : ..:::: .:.: :..:
CCDS37 LDLTLFPMDTQRCKMQLESFGYTTDDLRFIWQSGDPVQL-EKIALPQFDIKKE-DIEYGN
190 200 210 220 230 240
240 250 260 270 280
pF1KE5 CTKHYN-TGKFTCIEVRFHLERQMGYYLIQMYIPSLLIVILSWVSFWINMDAAPARVALG
:::.:. :: .::.:: : :.::.:.:.. .: :.::::.:::.::::: ::. ::: ::
CCDS37 CTKYYKGTGYYTCVEVIFTLRRQVGFYMMGVYAPTLLIVVLSWLSFWINPDASAARVPLG
250 260 270 280 290 300
290 300 310 320 330 340
pF1KE5 ITTVLTMTTQSSGSRASLPKVSYVKAIDIWMAVCLLFVFSALLEYAAVNFV----SRQHK
: .::..... . : :::::::::.:.:. .:::: :..:.:::.:. . .: .
CCDS37 IFSVLSLASECTTLAAELPKVSYVKALDVWLIACLLFGFASLVEYAVVQVMLNNPKRVEA
310 320 330 340 350 360
350 360 370 380 390
pF1KE5 ELLRFRRKRKNKTEAFALEKFYRFSDMDDEVRESRFSFTAYGMGPC---------LQAKD
: :. . .. .. . : . :. : .. : : :...:
CCDS37 EKARIAKAEQADGKGGNVAKKNTVNGTGTPVHISTLQV---GETRCKKVCTSKSDLRSND
370 380 390 400 410
400 410 420 430
pF1KE5 ----GMTPKG---PNH-----PVQVMP----------KSPDEMRKVFIDRAKKIDTISRA
: :. :. :..: :.: . :. ::.:: .::
CCDS37 FSIVGSLPRDFELSNYDCYGKPIEVNNGLGKSQAKNNKKPPPAKPVIPTAAKRIDLYARA
420 430 440 450 460 470
440 450 460
pF1KE5 CFPLAFLIFNIFYWVIYKILRHEDIHQQQD
::. ::.::..:: ::
CCDS37 LFPFCFLFFNVIYWSIYL
480 490
>>CCDS54813.1 GLRB gene_id:2743|Hs108|chr4 (303 aa)
initn: 996 init1: 454 opt: 1040 Z-score: 1284.5 bits: 246.4 E(32554): 3.2e-65
Smith-Waterman score: 1040; 59.3% identity (79.3% similar) in 270 aa overlap (25-289:38-302)
10 20 30 40 50
pF1KE5 MAHVRHFRTLVSGFYFWEAALLLSLVATKETDSARSRSAPMSPSDFLDKLMGRT
: .... .: : :..:..:.
CCDS54 AFLILISLWVEEAYSKEKSSKKGKGKKKQYLCPSQQSAEDLARVPANSTSNILNRLL---
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE5 SGYDARIRPNFKGPPVNVTCNIFINSFGSIAETTMDYRVNIFLRQKWNDPRLAY-SEY-P
.:: :::::::: ::.:. :::::::::: ::::::::::::::::::::: :..
CCDS54 VSYDPRIRPNFKGIPVDVVVNIFINSFGSIQETTMDYRVNIFLRQKWNDPRLKLPSDFRG
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE5 DDSLDLDPSMLDSIWKPDLFFANEKGANFHEVTTDNKLLRIFKNGNVLYSIRLTLTLSCP
.:.: .::.: .:::::::::::.::::.:: .: :: ::..:.:: :.::..:::::
CCDS54 SDALTVDPTMYKCLWKPDLFFANEKSANFHDVTQENILLFIFRDGDVLVSMRLSITLSCP
130 140 150 160 170 180
180 190 200 210 220 230
pF1KE5 MDLKNFPMDVQTCIMQLESFGYTMNDLIFEWQDEAPVQVAEGLTLPQFLLKEEKDLRY--
.:: ::::.: : ::::::::: .:: : ::. :::. : ..:::: .:.: :..:
CCDS54 LDLTLFPMDTQRCKMQLESFGYTTDDLRFIWQSGDPVQL-EKIALPQFDIKKE-DIEYGN
190 200 210 220 230 240
240 250 260 270 280
pF1KE5 CTKHYN-TGKFTCIEVRFHLERQMGYYLIQMYIPSLLIVILSWVSFWINMDAAPARVALG
:::.:. :: .::.:: : :.::.:.:.. .: :.::::.:::.::::: ::. ::: ::
CCDS54 CTKYYKGTGYYTCVEVIFTLRRQVGFYMMGVYAPTLLIVVLSWLSFWINPDASAARVPLG
250 260 270 280 290 300
290 300 310 320 330 340
pF1KE5 ITTVLTMTTQSSGSRASLPKVSYVKAIDIWMAVCLLFVFSALLEYAAVNFVSRQHKELLR
CCDS54 W
464 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 01:26:22 2016 done: Tue Nov 8 01:26:22 2016
Total Scan time: 2.020 Total Display time: 0.070
Function used was FASTA [36.3.4 Apr, 2011]