FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5517, 441 aa
  1>>>pF1KE5517 441 - 441 aa - 441 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.1923+/-0.000835; mu= 13.7675+/- 0.050
 mean_var=89.0573+/-17.486, 0's: 0 Z-trim(109.1): 9  B-trim: 0 in 0/51
 Lambda= 0.135906
 statistics sampled from 10626 (10631) to 10626 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.697), E-opt: 0.2 (0.327), width:  16
 Scan time:  2.880

The best scores are:                                      opt bits E(32554)
CCDS6730.1 TRMO gene_id:51531|Hs108|chr9           ( 441) 3008 599.7 1.9e-171
CCDS83387.1 TRMO gene_id:51531|Hs108|chr9          ( 295) 2007 403.3 1.6e-112


>>CCDS6730.1 TRMO gene_id:51531|Hs108|chr9                (441 aa)
 initn: 3008 init1: 3008 opt: 3008  Z-score: 3191.6  bits: 599.7 E(32554): 1.9e-171
Smith-Waterman score: 3008; 99.8% identity (99.8% similar) in 441 aa overlap (1-441:1-441)

               10        20        30        40        50        60
pF1KE5 MRGLEEPGPRPTATPCGCVKPALETGNLLTEPVGYLESCFSAKNGTPRQPSICSYSRACL
       :::::: :::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS67 MRGLEESGPRPTATPCGCVKPALETGNLLTEPVGYLESCFSAKNGTPRQPSICSYSRACL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 RIRKRIFNNPEHSLMGLEQFSHVWILFVFHKNGHLSCKAKVQPPRLNGAKTGVFSTRSPH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS67 RIRKRIFNNPEHSLMGLEQFSHVWILFVFHKNGHLSCKAKVQPPRLNGAKTGVFSTRSPH
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 RPNAIGLTLAKLEKVEGGAIYLSGIDMIHGTPVLDIKPYIAEYDSPQNVMEPLADFNLQN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS67 RPNAIGLTLAKLEKVEGGAIYLSGIDMIHGTPVLDIKPYIAEYDSPQNVMEPLADFNLQN
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE5 NQHTPNTVSQSDSKTDSCDQRQLSGCDEPQPHHSTKRKPKCPEDRTSEENYLTHSDTARI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS67 NQHTPNTVSQSDSKTDSCDQRQLSGCDEPQPHHSTKRKPKCPEDRTSEENYLTHSDTARI
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE5 QQAFPMHREIAVDFGLESRRDQSSSVAEEQIGPYCPEKSFSEKGTDKKLERVEGAAVLQG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS67 QQAFPMHREIAVDFGLESRRDQSSSVAEEQIGPYCPEKSFSEKGTDKKLERVEGAAVLQG
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE5 SRAETQPMAPHCPAGRADGAPRSVVPAWVTEAPVATLEVRFTPHAEMDLGQLSSQDVGQA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS67 SRAETQPMAPHCPAGRADGAPRSVVPAWVTEAPVATLEVRFTPHAEMDLGQLSSQDVGQA
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE5 SFKYFQSAEEAKRAIEAVLSADPRSVYRRKLCQDRLFYFTVDIAHVTCWFGDGFAEVLRI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS67 SFKYFQSAEEAKRAIEAVLSADPRSVYRRKLCQDRLFYFTVDIAHVTCWFGDGFAEVLRI
              370       380       390       400       410       420

              430       440 
pF1KE5 KPASEPVHMTGPVGSLVSLGS
       :::::::::::::::::::::
CCDS67 KPASEPVHMTGPVGSLVSLGS
              430       440 

>>CCDS83387.1 TRMO gene_id:51531|Hs108|chr9               (295 aa)
 initn: 2007 init1: 2007 opt: 2007  Z-score: 2133.6  bits: 403.3 E(32554): 1.6e-112
Smith-Waterman score: 2007; 100.0% identity (100.0% similar) in 295 aa overlap (147-441:1-295)

        120       130       140       150       160       170      
pF1KE5 RSPHRPNAIGLTLAKLEKVEGGAIYLSGIDMIHGTPVLDIKPYIAEYDSPQNVMEPLADF
                                     ::::::::::::::::::::::::::::::
CCDS83                               MIHGTPVLDIKPYIAEYDSPQNVMEPLADF
                                             10        20        30

        180       190       200       210       220       230      
pF1KE5 NLQNNQHTPNTVSQSDSKTDSCDQRQLSGCDEPQPHHSTKRKPKCPEDRTSEENYLTHSD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 NLQNNQHTPNTVSQSDSKTDSCDQRQLSGCDEPQPHHSTKRKPKCPEDRTSEENYLTHSD
               40        50        60        70        80        90

        240       250       260       270       280       290      
pF1KE5 TARIQQAFPMHREIAVDFGLESRRDQSSSVAEEQIGPYCPEKSFSEKGTDKKLERVEGAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 TARIQQAFPMHREIAVDFGLESRRDQSSSVAEEQIGPYCPEKSFSEKGTDKKLERVEGAA
              100       110       120       130       140       150

        300       310       320       330       340       350      
pF1KE5 VLQGSRAETQPMAPHCPAGRADGAPRSVVPAWVTEAPVATLEVRFTPHAEMDLGQLSSQD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 VLQGSRAETQPMAPHCPAGRADGAPRSVVPAWVTEAPVATLEVRFTPHAEMDLGQLSSQD
              160       170       180       190       200       210

        360       370       380       390       400       410      
pF1KE5 VGQASFKYFQSAEEAKRAIEAVLSADPRSVYRRKLCQDRLFYFTVDIAHVTCWFGDGFAE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 VGQASFKYFQSAEEAKRAIEAVLSADPRSVYRRKLCQDRLFYFTVDIAHVTCWFGDGFAE
              220       230       240       250       260       270

        420       430       440 
pF1KE5 VLRIKPASEPVHMTGPVGSLVSLGS
       :::::::::::::::::::::::::
CCDS83 VLRIKPASEPVHMTGPVGSLVSLGS
              280       290     




441 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 01:24:23 2016 done: Tue Nov  8 01:24:24 2016
 Total Scan time:  2.880 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]