FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5512, 360 aa
  1>>>pF1KE5512 360 - 360 aa - 360 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.6589+/-0.000318; mu= 15.5251+/- 0.020
 mean_var=83.1423+/-16.778, 0's: 0 Z-trim(117.5): 3  B-trim: 958 in 2/53
 Lambda= 0.140658
 statistics sampled from 29542 (29545) to 29542 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.715), E-opt: 0.2 (0.346), width:  16
 Scan time:  7.180

The best scores are:                                      opt bits E(85289)
NP_001036046 (OMIM: 607902) snurportin-1 [Homo sap ( 360) 2472 511.1 1.6e-144
NP_005692 (OMIM: 607902) snurportin-1 [Homo sapien ( 360) 2472 511.1 1.6e-144
NP_001036053 (OMIM: 607902) snurportin-1 [Homo sap ( 360) 2472 511.1 1.6e-144


>>NP_001036046 (OMIM: 607902) snurportin-1 [Homo sapiens  (360 aa)
 initn: 2472 init1: 2472 opt: 2472  Z-score: 2715.8  bits: 511.1 E(85289): 1.6e-144
Smith-Waterman score: 2472; 100.0% identity (100.0% similar) in 360 aa overlap (1-360:1-360)

               10        20        30        40        50        60
pF1KE5 MEELSQALASSFSVSQDLNSTAAPHPRLSQYKSKYSSLEQSERRRRLLELQKSKRLDYVN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MEELSQALASSFSVSQDLNSTAAPHPRLSQYKSKYSSLEQSERRRRLLELQKSKRLDYVN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 HARRLAEDDWTGMESEEENKKDDEEMDIDTVKKLPKHYANQLMLSEWLIDVPSDLGQEWI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 HARRLAEDDWTGMESEEENKKDDEEMDIDTVKKLPKHYANQLMLSEWLIDVPSDLGQEWI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 VVVCPVGKRALIVASRGSTSAYTKSGYCVNRFSSLLPGGNRRNSTAKDYTILDCIYNEVN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VVVCPVGKRALIVASRGSTSAYTKSGYCVNRFSSLLPGGNRRNSTAKDYTILDCIYNEVN
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE5 QTYYVLDVMCWRGHPFYDCQTDFRFYWMHSKLPEEEGLGEKTKLNPFKFVGLKNFPCTPE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QTYYVLDVMCWRGHPFYDCQTDFRFYWMHSKLPEEEGLGEKTKLNPFKFVGLKNFPCTPE
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE5 SLCDVLSMDFPFEVDGLLFYHKQTHYSPGSTPLVGWLRPYMVSDVLGVAVPAGPLTTKPD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SLCDVLSMDFPFEVDGLLFYHKQTHYSPGSTPLVGWLRPYMVSDVLGVAVPAGPLTTKPD
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE5 YAGHQLQQIMEHKKSQKEGMKEKLTHKASENGHYELEHLSTPKLKGSSHSPDHPGCLMEN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YAGHQLQQIMEHKKSQKEGMKEKLTHKASENGHYELEHLSTPKLKGSSHSPDHPGCLMEN
              310       320       330       340       350       360

>>NP_005692 (OMIM: 607902) snurportin-1 [Homo sapiens]    (360 aa)
 initn: 2472 init1: 2472 opt: 2472  Z-score: 2715.8  bits: 511.1 E(85289): 1.6e-144
Smith-Waterman score: 2472; 100.0% identity (100.0% similar) in 360 aa overlap (1-360:1-360)

               10        20        30        40        50        60
pF1KE5 MEELSQALASSFSVSQDLNSTAAPHPRLSQYKSKYSSLEQSERRRRLLELQKSKRLDYVN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 MEELSQALASSFSVSQDLNSTAAPHPRLSQYKSKYSSLEQSERRRRLLELQKSKRLDYVN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 HARRLAEDDWTGMESEEENKKDDEEMDIDTVKKLPKHYANQLMLSEWLIDVPSDLGQEWI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 HARRLAEDDWTGMESEEENKKDDEEMDIDTVKKLPKHYANQLMLSEWLIDVPSDLGQEWI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 VVVCPVGKRALIVASRGSTSAYTKSGYCVNRFSSLLPGGNRRNSTAKDYTILDCIYNEVN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 VVVCPVGKRALIVASRGSTSAYTKSGYCVNRFSSLLPGGNRRNSTAKDYTILDCIYNEVN
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE5 QTYYVLDVMCWRGHPFYDCQTDFRFYWMHSKLPEEEGLGEKTKLNPFKFVGLKNFPCTPE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 QTYYVLDVMCWRGHPFYDCQTDFRFYWMHSKLPEEEGLGEKTKLNPFKFVGLKNFPCTPE
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE5 SLCDVLSMDFPFEVDGLLFYHKQTHYSPGSTPLVGWLRPYMVSDVLGVAVPAGPLTTKPD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 SLCDVLSMDFPFEVDGLLFYHKQTHYSPGSTPLVGWLRPYMVSDVLGVAVPAGPLTTKPD
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE5 YAGHQLQQIMEHKKSQKEGMKEKLTHKASENGHYELEHLSTPKLKGSSHSPDHPGCLMEN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 YAGHQLQQIMEHKKSQKEGMKEKLTHKASENGHYELEHLSTPKLKGSSHSPDHPGCLMEN
              310       320       330       340       350       360

>>NP_001036053 (OMIM: 607902) snurportin-1 [Homo sapiens  (360 aa)
 initn: 2472 init1: 2472 opt: 2472  Z-score: 2715.8  bits: 511.1 E(85289): 1.6e-144
Smith-Waterman score: 2472; 100.0% identity (100.0% similar) in 360 aa overlap (1-360:1-360)

               10        20        30        40        50        60
pF1KE5 MEELSQALASSFSVSQDLNSTAAPHPRLSQYKSKYSSLEQSERRRRLLELQKSKRLDYVN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MEELSQALASSFSVSQDLNSTAAPHPRLSQYKSKYSSLEQSERRRRLLELQKSKRLDYVN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 HARRLAEDDWTGMESEEENKKDDEEMDIDTVKKLPKHYANQLMLSEWLIDVPSDLGQEWI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 HARRLAEDDWTGMESEEENKKDDEEMDIDTVKKLPKHYANQLMLSEWLIDVPSDLGQEWI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 VVVCPVGKRALIVASRGSTSAYTKSGYCVNRFSSLLPGGNRRNSTAKDYTILDCIYNEVN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VVVCPVGKRALIVASRGSTSAYTKSGYCVNRFSSLLPGGNRRNSTAKDYTILDCIYNEVN
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE5 QTYYVLDVMCWRGHPFYDCQTDFRFYWMHSKLPEEEGLGEKTKLNPFKFVGLKNFPCTPE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QTYYVLDVMCWRGHPFYDCQTDFRFYWMHSKLPEEEGLGEKTKLNPFKFVGLKNFPCTPE
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE5 SLCDVLSMDFPFEVDGLLFYHKQTHYSPGSTPLVGWLRPYMVSDVLGVAVPAGPLTTKPD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SLCDVLSMDFPFEVDGLLFYHKQTHYSPGSTPLVGWLRPYMVSDVLGVAVPAGPLTTKPD
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE5 YAGHQLQQIMEHKKSQKEGMKEKLTHKASENGHYELEHLSTPKLKGSSHSPDHPGCLMEN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YAGHQLQQIMEHKKSQKEGMKEKLTHKASENGHYELEHLSTPKLKGSSHSPDHPGCLMEN
              310       320       330       340       350       360




360 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 01:21:58 2016 done: Tue Nov  8 01:21:59 2016
 Total Scan time:  7.180 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]