Result of FASTA (ccds) for
pFN21AE5449
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE5449, 335 aa
1>>>pF1KE5449 335 - 335 aa - 335 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 8.1620+/-0.000954; mu= 4.4595+/- 0.058
mean_var=189.9829+/-37.985, 0's: 0 Z-trim(112.4): 9 B-trim: 0 in 0/52
Lambda= 0.093050
statistics sampled from 13174 (13181) to 13174 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.748), E-opt: 0.2 (0.405), width: 16
Scan time: 2.630
The best scores are: opt bits E(32554)
CCDS59273.1 IST1 gene_id:9798|Hs108|chr16 ( 335) 2197 306.9 1.5e-83
CCDS59272.1 IST1 gene_id:9798|Hs108|chr16 ( 366) 1685 238.2 8e-63
CCDS59271.1 IST1 gene_id:9798|Hs108|chr16 ( 379) 1685 238.2 8.2e-63
CCDS10905.1 IST1 gene_id:9798|Hs108|chr16 ( 360) 1673 236.6 2.4e-62
CCDS59274.1 IST1 gene_id:9798|Hs108|chr16 ( 218) 760 113.8 1.3e-25
>>CCDS59273.1 IST1 gene_id:9798|Hs108|chr16 (335 aa)
initn: 2197 init1: 2197 opt: 2197 Z-score: 1613.3 bits: 306.9 E(32554): 1.5e-83
Smith-Waterman score: 2197; 100.0% identity (100.0% similar) in 335 aa overlap (1-335:1-335)
10 20 30 40 50 60
pF1KE5 MLGSGFKAERLRVNLRLVINRLKLLEKKKTELAQKARKEIADYLAAGKDERARIRVEHII
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 MLGSGFKAERLRVNLRLVINRLKLLEKKKTELAQKARKEIADYLAAGKDERARIRVEHII
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 REDYLVEAMEILELYCDLLLARFGLIQSMKELDSGLAESVSTLIWAAPRLQSEVAELKIV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 REDYLVEAMEILELYCDLLLARFGLIQSMKELDSGLAESVSTLIWAAPRLQSEVAELKIV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE5 ADQLCAKYSKEYGKLCRTNQIGTVNDRLMHKLSVEAPPKILVERYLIEIAKNYNVPYEPD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 ADQLCAKYSKEYGKLCRTNQIGTVNDRLMHKLSVEAPPKILVERYLIEIAKNYNVPYEPD
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE5 SVVMAEAPPGVETDLIDVGFTDDVKKGGPGRGGSGGFTAPVGGPDGTVPMPMPMPMPMPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 SVVMAEAPPGVETDLIDVGFTDDVKKGGPGRGGSGGFTAPVGGPDGTVPMPMPMPMPMPS
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE5 ANTPFSYPLPKGPVDDINADKNISSAQIVGPGPKPEASAKLPSRPADNYDNFVLPELPSV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 ANTPFSYPLPKGPVDDINADKNISSAQIVGPGPKPEASAKLPSRPADNYDNFVLPELPSV
250 260 270 280 290 300
310 320 330
pF1KE5 PDTLPTASAGASTSASEDIDFDDLSRRFEELKKKT
:::::::::::::::::::::::::::::::::::
CCDS59 PDTLPTASAGASTSASEDIDFDDLSRRFEELKKKT
310 320 330
>>CCDS59272.1 IST1 gene_id:9798|Hs108|chr16 (366 aa)
initn: 1762 init1: 1670 opt: 1685 Z-score: 1241.3 bits: 238.2 E(32554): 8e-63
Smith-Waterman score: 2125; 91.5% identity (91.5% similar) in 366 aa overlap (1-335:1-366)
10 20 30 40 50 60
pF1KE5 MLGSGFKAERLRVNLRLVINRLKLLEKKKTELAQKARKEIADYLAAGKDERARIRVEHII
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 MLGSGFKAERLRVNLRLVINRLKLLEKKKTELAQKARKEIADYLAAGKDERARIRVEHII
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 REDYLVEAMEILELYCDLLLARFGLIQSMKELDSGLAESVSTLIWAAPRLQSEVAELKIV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 REDYLVEAMEILELYCDLLLARFGLIQSMKELDSGLAESVSTLIWAAPRLQSEVAELKIV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE5 ADQLCAKYSKEYGKLCRTNQIGTVNDRLMHKLSVEAPPKILVERYLIEIAKNYNVPYEPD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 ADQLCAKYSKEYGKLCRTNQIGTVNDRLMHKLSVEAPPKILVERYLIEIAKNYNVPYEPD
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE5 SVVMAEAPPGVETDLIDVGFTDDVKKGGPGRGGSGGFTAPVGGPDGTVPMPMPMPMPMPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 SVVMAEAPPGVETDLIDVGFTDDVKKGGPGRGGSGGFTAPVGGPDGTVPMPMPMPMPMPS
190 200 210 220 230 240
250 260
pF1KE5 ANTPFSYPLPKGP-------------------------------VDDINADKNISSAQIV
::::::::::::: ::::::::::::::::
CCDS59 ANTPFSYPLPKGPSDFNGLPMGTYQAFPNIHPPQIPATPPSYESVDDINADKNISSAQIV
250 260 270 280 290 300
270 280 290 300 310 320
pF1KE5 GPGPKPEASAKLPSRPADNYDNFVLPELPSVPDTLPTASAGASTSASEDIDFDDLSRRFE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 GPGPKPEASAKLPSRPADNYDNFVLPELPSVPDTLPTASAGASTSASEDIDFDDLSRRFE
310 320 330 340 350 360
330
pF1KE5 ELKKKT
::::::
CCDS59 ELKKKT
>>CCDS59271.1 IST1 gene_id:9798|Hs108|chr16 (379 aa)
initn: 1762 init1: 1670 opt: 1685 Z-score: 1241.1 bits: 238.2 E(32554): 8.2e-63
Smith-Waterman score: 2125; 91.5% identity (91.5% similar) in 366 aa overlap (1-335:14-379)
10 20 30 40
pF1KE5 MLGSGFKAERLRVNLRLVINRLKLLEKKKTELAQKARKEIADYLAAG
:::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 MVFKLKTKEEQHSMLGSGFKAERLRVNLRLVINRLKLLEKKKTELAQKARKEIADYLAAG
10 20 30 40 50 60
50 60 70 80 90 100
pF1KE5 KDERARIRVEHIIREDYLVEAMEILELYCDLLLARFGLIQSMKELDSGLAESVSTLIWAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 KDERARIRVEHIIREDYLVEAMEILELYCDLLLARFGLIQSMKELDSGLAESVSTLIWAA
70 80 90 100 110 120
110 120 130 140 150 160
pF1KE5 PRLQSEVAELKIVADQLCAKYSKEYGKLCRTNQIGTVNDRLMHKLSVEAPPKILVERYLI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 PRLQSEVAELKIVADQLCAKYSKEYGKLCRTNQIGTVNDRLMHKLSVEAPPKILVERYLI
130 140 150 160 170 180
170 180 190 200 210 220
pF1KE5 EIAKNYNVPYEPDSVVMAEAPPGVETDLIDVGFTDDVKKGGPGRGGSGGFTAPVGGPDGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 EIAKNYNVPYEPDSVVMAEAPPGVETDLIDVGFTDDVKKGGPGRGGSGGFTAPVGGPDGT
190 200 210 220 230 240
230 240 250
pF1KE5 VPMPMPMPMPMPSANTPFSYPLPKGP-------------------------------VDD
:::::::::::::::::::::::::: :::
CCDS59 VPMPMPMPMPMPSANTPFSYPLPKGPSDFNGLPMGTYQAFPNIHPPQIPATPPSYESVDD
250 260 270 280 290 300
260 270 280 290 300 310
pF1KE5 INADKNISSAQIVGPGPKPEASAKLPSRPADNYDNFVLPELPSVPDTLPTASAGASTSAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 INADKNISSAQIVGPGPKPEASAKLPSRPADNYDNFVLPELPSVPDTLPTASAGASTSAS
310 320 330 340 350 360
320 330
pF1KE5 EDIDFDDLSRRFEELKKKT
:::::::::::::::::::
CCDS59 EDIDFDDLSRRFEELKKKT
370
>>CCDS10905.1 IST1 gene_id:9798|Hs108|chr16 (360 aa)
initn: 1762 init1: 1670 opt: 1673 Z-score: 1232.7 bits: 236.6 E(32554): 2.4e-62
Smith-Waterman score: 1673; 89.1% identity (94.6% similar) in 294 aa overlap (1-294:1-287)
10 20 30 40 50 60
pF1KE5 MLGSGFKAERLRVNLRLVINRLKLLEKKKTELAQKARKEIADYLAAGKDERARIRVEHII
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MLGSGFKAERLRVNLRLVINRLKLLEKKKTELAQKARKEIADYLAAGKDERARIRVEHII
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 REDYLVEAMEILELYCDLLLARFGLIQSMKELDSGLAESVSTLIWAAPRLQSEVAELKIV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 REDYLVEAMEILELYCDLLLARFGLIQSMKELDSGLAESVSTLIWAAPRLQSEVAELKIV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE5 ADQLCAKYSKEYGKLCRTNQIGTVNDRLMHKLSVEAPPKILVERYLIEIAKNYNVPYEPD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 ADQLCAKYSKEYGKLCRTNQIGTVNDRLMHKLSVEAPPKILVERYLIEIAKNYNVPYEPD
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE5 SVVMAEAPPGVETDLIDVGFTDDVKKGGPGRGGSGGFTAPVGGPDGTVPMPMPMPMPMPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 SVVMAEAPPGVETDLIDVGFTDDVKKGGPGRGGSGGFTAPVGGPDGTVPMPMPMPMPMPS
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE5 ANTPFSYPLPKGPVDDINADKNISSAQIVGPGPKPEASAKLPSRPADNYDNFVLPELPSV
::::::::::::: .:.:. ... : :. .: ..:. : .:....:
CCDS10 ANTPFSYPLPKGP-SDFNGLP-MGTYQAF-PNIHPP---QIPATPP-SYESMTLMLIRIS
250 260 270 280 290
310 320 330
pF1KE5 PDTLPTASAGASTSASEDIDFDDLSRRFEELKKKT
CCDS10 LLHRLLVLDPSQKPLQSFLPDLQITMTTLSYQSCHLCQTHYQLHLLVPAPQHLKTLTLMI
300 310 320 330 340 350
>>CCDS59274.1 IST1 gene_id:9798|Hs108|chr16 (218 aa)
initn: 837 init1: 745 opt: 760 Z-score: 573.3 bits: 113.8 E(32554): 1.3e-25
Smith-Waterman score: 1200; 85.8% identity (85.8% similar) in 218 aa overlap (149-335:1-218)
120 130 140 150 160 170
pF1KE5 IVADQLCAKYSKEYGKLCRTNQIGTVNDRLMHKLSVEAPPKILVERYLIEIAKNYNVPYE
::::::::::::::::::::::::::::::
CCDS59 MHKLSVEAPPKILVERYLIEIAKNYNVPYE
10 20 30
180 190 200 210 220 230
pF1KE5 PDSVVMAEAPPGVETDLIDVGFTDDVKKGGPGRGGSGGFTAPVGGPDGTVPMPMPMPMPM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 PDSVVMAEAPPGVETDLIDVGFTDDVKKGGPGRGGSGGFTAPVGGPDGTVPMPMPMPMPM
40 50 60 70 80 90
240 250 260
pF1KE5 PSANTPFSYPLPKGP-------------------------------VDDINADKNISSAQ
::::::::::::::: ::::::::::::::
CCDS59 PSANTPFSYPLPKGPSDFNGLPMGTYQAFPNIHPPQIPATPPSYESVDDINADKNISSAQ
100 110 120 130 140 150
270 280 290 300 310 320
pF1KE5 IVGPGPKPEASAKLPSRPADNYDNFVLPELPSVPDTLPTASAGASTSASEDIDFDDLSRR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 IVGPGPKPEASAKLPSRPADNYDNFVLPELPSVPDTLPTASAGASTSASEDIDFDDLSRR
160 170 180 190 200 210
330
pF1KE5 FEELKKKT
::::::::
CCDS59 FEELKKKT
335 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 00:52:40 2016 done: Tue Nov 8 00:52:41 2016
Total Scan time: 2.630 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]