Result of FASTA (ccds) for
pFN21AE5431
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE5431, 348 aa
1>>>pF1KE5431 348 - 348 aa - 348 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.5901+/-0.000826; mu= 15.4568+/- 0.050
mean_var=86.1176+/-17.133, 0's: 0 Z-trim(108.6): 70 B-trim: 0 in 0/52
Lambda= 0.138206
statistics sampled from 10270 (10347) to 10270 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.696), E-opt: 0.2 (0.318), width: 16
Scan time: 1.780
The best scores are: opt bits E(32554)
CCDS4578.1 HFE gene_id:3077|Hs108|chr6 ( 348) 2411 490.5 8.7e-139
CCDS75412.1 HFE gene_id:3077|Hs108|chr6 ( 337) 2324 473.1 1.4e-133
CCDS47387.1 HFE gene_id:3077|Hs108|chr6 ( 325) 2100 428.5 3.9e-120
CCDS4580.1 HFE gene_id:3077|Hs108|chr6 ( 260) 1636 335.9 2.3e-92
CCDS54974.1 HFE gene_id:3077|Hs108|chr6 ( 334) 1466 302.1 4.5e-82
CCDS4579.1 HFE gene_id:3077|Hs108|chr6 ( 256) 985 206.1 2.7e-53
CCDS4581.1 HFE gene_id:3077|Hs108|chr6 ( 168) 978 204.5 5.1e-53
CCDS54975.1 HFE gene_id:3077|Hs108|chr6 ( 246) 907 190.5 1.3e-48
CCDS47386.1 HFE gene_id:3077|Hs108|chr6 ( 242) 894 187.9 7.5e-48
CCDS1342.1 MR1 gene_id:3140|Hs108|chr1 ( 341) 789 167.1 2e-41
CCDS34373.1 A gene_id:3105|Hs108|chr6 ( 365) 766 162.5 4.9e-40
CCDS34394.1 B gene_id:3106|Hs108|chr6 ( 362) 761 161.5 9.8e-40
CCDS34393.1 C gene_id:3107|Hs108|chr6 ( 366) 732 155.7 5.4e-38
CCDS43438.1 F gene_id:3134|Hs108|chr6 ( 346) 726 154.5 1.2e-37
CCDS43437.1 F gene_id:3134|Hs108|chr6 ( 442) 726 154.6 1.4e-37
CCDS34379.1 E gene_id:3133|Hs108|chr6 ( 358) 723 153.9 1.9e-37
CCDS4668.1 G gene_id:3135|Hs108|chr6 ( 338) 718 152.9 3.5e-37
CCDS5680.1 AZGP1 gene_id:563|Hs108|chr7 ( 298) 698 148.9 5.1e-36
CCDS43449.1 MICB gene_id:4277|Hs108|chr6 ( 383) 499 109.3 5.5e-24
CCDS53440.1 MR1 gene_id:3140|Hs108|chr1 ( 249) 492 107.8 1e-23
CCDS12770.1 FCGRT gene_id:2217|Hs108|chr19 ( 365) 492 107.9 1.4e-23
CCDS53441.1 MR1 gene_id:3140|Hs108|chr1 ( 214) 488 106.9 1.6e-23
CCDS56412.1 MICA gene_id:100507436|Hs108|chr6 ( 332) 479 105.3 7.7e-23
CCDS75423.1 MICB gene_id:4277|Hs108|chr6 ( 351) 476 104.7 1.2e-22
CCDS75421.1 MICA gene_id:100507436|Hs108|chr6 ( 235) 388 87.0 1.7e-17
CCDS1173.1 CD1D gene_id:912|Hs108|chr1 ( 335) 342 77.9 1.3e-14
CCDS43439.1 F gene_id:3134|Hs108|chr6 ( 254) 332 75.9 4.2e-14
CCDS75422.1 MICB gene_id:4277|Hs108|chr6 ( 340) 325 74.6 1.4e-13
CCDS4582.1 HFE gene_id:3077|Hs108|chr6 ( 76) 315 72.1 1.7e-13
CCDS1174.1 CD1A gene_id:909|Hs108|chr1 ( 327) 315 72.6 5.3e-13
CCDS59006.1 DQB1 gene_id:3119|Hs108|chr6 ( 269) 310 71.5 9.2e-13
CCDS43451.1 DQB1 gene_id:3119|Hs108|chr6 ( 261) 306 70.7 1.6e-12
CCDS78128.1 DQB2 gene_id:3120|Hs108|chr6 ( 264) 305 70.5 1.8e-12
CCDS4751.1 DRB5 gene_id:3127|Hs108|chr6 ( 266) 276 64.7 1e-10
CCDS47409.1 DRB1 gene_id:3123|Hs108|chr6 ( 266) 276 64.7 1e-10
>>CCDS4578.1 HFE gene_id:3077|Hs108|chr6 (348 aa)
initn: 2411 init1: 2411 opt: 2411 Z-score: 2605.1 bits: 490.5 E(32554): 8.7e-139
Smith-Waterman score: 2411; 100.0% identity (100.0% similar) in 348 aa overlap (1-348:1-348)
10 20 30 40 50 60
pF1KE5 MGPRARPALLLLMLLQTAVLQGRLLRSHSLHYLFMGASEQDLGLSLFEALGYVDDQLFVF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 MGPRARPALLLLMLLQTAVLQGRLLRSHSLHYLFMGASEQDLGLSLFEALGYVDDQLFVF
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 YDHESRRVEPRTPWVSSRISSQMWLQLSQSLKGWDHMFTVDFWTIMENHNHSKESHTLQV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 YDHESRRVEPRTPWVSSRISSQMWLQLSQSLKGWDHMFTVDFWTIMENHNHSKESHTLQV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE5 ILGCEMQEDNSTEGYWKYGYDGQDHLEFCPDTLDWRAAEPRAWPTKLEWERHKIRARQNR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 ILGCEMQEDNSTEGYWKYGYDGQDHLEFCPDTLDWRAAEPRAWPTKLEWERHKIRARQNR
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE5 AYLERDCPAQLQQLLELGRGVLDQQVPPLVKVTHHVTSSVTTLRCRALNYYPQNITMKWL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 AYLERDCPAQLQQLLELGRGVLDQQVPPLVKVTHHVTSSVTTLRCRALNYYPQNITMKWL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE5 KDKQPMDAKEFEPKDVLPNGDGTYQGWITLAVPPGEEQRYTCQVEHPGLDQPLIVIWEPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 KDKQPMDAKEFEPKDVLPNGDGTYQGWITLAVPPGEEQRYTCQVEHPGLDQPLIVIWEPS
250 260 270 280 290 300
310 320 330 340
pF1KE5 PSGTLVIGVISGIAVFVVILFIGILFIILRKRQGSRGAMGHYVLAERE
::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 PSGTLVIGVISGIAVFVVILFIGILFIILRKRQGSRGAMGHYVLAERE
310 320 330 340
>>CCDS75412.1 HFE gene_id:3077|Hs108|chr6 (337 aa)
initn: 2324 init1: 2324 opt: 2324 Z-score: 2511.5 bits: 473.1 E(32554): 1.4e-133
Smith-Waterman score: 2324; 100.0% identity (100.0% similar) in 335 aa overlap (1-335:1-335)
10 20 30 40 50 60
pF1KE5 MGPRARPALLLLMLLQTAVLQGRLLRSHSLHYLFMGASEQDLGLSLFEALGYVDDQLFVF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 MGPRARPALLLLMLLQTAVLQGRLLRSHSLHYLFMGASEQDLGLSLFEALGYVDDQLFVF
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 YDHESRRVEPRTPWVSSRISSQMWLQLSQSLKGWDHMFTVDFWTIMENHNHSKESHTLQV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 YDHESRRVEPRTPWVSSRISSQMWLQLSQSLKGWDHMFTVDFWTIMENHNHSKESHTLQV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE5 ILGCEMQEDNSTEGYWKYGYDGQDHLEFCPDTLDWRAAEPRAWPTKLEWERHKIRARQNR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 ILGCEMQEDNSTEGYWKYGYDGQDHLEFCPDTLDWRAAEPRAWPTKLEWERHKIRARQNR
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE5 AYLERDCPAQLQQLLELGRGVLDQQVPPLVKVTHHVTSSVTTLRCRALNYYPQNITMKWL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 AYLERDCPAQLQQLLELGRGVLDQQVPPLVKVTHHVTSSVTTLRCRALNYYPQNITMKWL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE5 KDKQPMDAKEFEPKDVLPNGDGTYQGWITLAVPPGEEQRYTCQVEHPGLDQPLIVIWEPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 KDKQPMDAKEFEPKDVLPNGDGTYQGWITLAVPPGEEQRYTCQVEHPGLDQPLIVIWEPS
250 260 270 280 290 300
310 320 330 340
pF1KE5 PSGTLVIGVISGIAVFVVILFIGILFIILRKRQGSRGAMGHYVLAERE
:::::::::::::::::::::::::::::::::::
CCDS75 PSGTLVIGVISGIAVFVVILFIGILFIILRKRQGSSF
310 320 330
>>CCDS47387.1 HFE gene_id:3077|Hs108|chr6 (325 aa)
initn: 2241 init1: 2100 opt: 2100 Z-score: 2270.4 bits: 428.5 E(32554): 3.9e-120
Smith-Waterman score: 2198; 93.1% identity (93.1% similar) in 348 aa overlap (1-348:1-325)
10 20 30 40 50 60
pF1KE5 MGPRARPALLLLMLLQTAVLQGRLLRSHSLHYLFMGASEQDLGLSLFEALGYVDDQLFVF
::::::::::::::::::::::::: :::::::::::
CCDS47 MGPRARPALLLLMLLQTAVLQGRLL-----------------------PLGYVDDQLFVF
10 20 30
70 80 90 100 110 120
pF1KE5 YDHESRRVEPRTPWVSSRISSQMWLQLSQSLKGWDHMFTVDFWTIMENHNHSKESHTLQV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 YDHESRRVEPRTPWVSSRISSQMWLQLSQSLKGWDHMFTVDFWTIMENHNHSKESHTLQV
40 50 60 70 80 90
130 140 150 160 170 180
pF1KE5 ILGCEMQEDNSTEGYWKYGYDGQDHLEFCPDTLDWRAAEPRAWPTKLEWERHKIRARQNR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 ILGCEMQEDNSTEGYWKYGYDGQDHLEFCPDTLDWRAAEPRAWPTKLEWERHKIRARQNR
100 110 120 130 140 150
190 200 210 220 230 240
pF1KE5 AYLERDCPAQLQQLLELGRGVLDQQVPPLVKVTHHVTSSVTTLRCRALNYYPQNITMKWL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 AYLERDCPAQLQQLLELGRGVLDQQVPPLVKVTHHVTSSVTTLRCRALNYYPQNITMKWL
160 170 180 190 200 210
250 260 270 280 290 300
pF1KE5 KDKQPMDAKEFEPKDVLPNGDGTYQGWITLAVPPGEEQRYTCQVEHPGLDQPLIVIWEPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 KDKQPMDAKEFEPKDVLPNGDGTYQGWITLAVPPGEEQRYTCQVEHPGLDQPLIVIWEPS
220 230 240 250 260 270
310 320 330 340
pF1KE5 PSGTLVIGVISGIAVFVVILFIGILFIILRKRQGSRGAMGHYVLAERE
::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 PSGTLVIGVISGIAVFVVILFIGILFIILRKRQGSRGAMGHYVLAERE
280 290 300 310 320
>>CCDS4580.1 HFE gene_id:3077|Hs108|chr6 (260 aa)
initn: 1636 init1: 1636 opt: 1636 Z-score: 1771.7 bits: 335.9 E(32554): 2.3e-92
Smith-Waterman score: 1636; 99.6% identity (100.0% similar) in 235 aa overlap (114-348:26-260)
90 100 110 120 130 140
pF1KE5 WLQLSQSLKGWDHMFTVDFWTIMENHNHSKESHTLQVILGCEMQEDNSTEGYWKYGYDGQ
.:::::::::::::::::::::::::::::
CCDS45 MGPRARPALLLLMLLQTAVLQGRLLQSHTLQVILGCEMQEDNSTEGYWKYGYDGQ
10 20 30 40 50
150 160 170 180 190 200
pF1KE5 DHLEFCPDTLDWRAAEPRAWPTKLEWERHKIRARQNRAYLERDCPAQLQQLLELGRGVLD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 DHLEFCPDTLDWRAAEPRAWPTKLEWERHKIRARQNRAYLERDCPAQLQQLLELGRGVLD
60 70 80 90 100 110
210 220 230 240 250 260
pF1KE5 QQVPPLVKVTHHVTSSVTTLRCRALNYYPQNITMKWLKDKQPMDAKEFEPKDVLPNGDGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 QQVPPLVKVTHHVTSSVTTLRCRALNYYPQNITMKWLKDKQPMDAKEFEPKDVLPNGDGT
120 130 140 150 160 170
270 280 290 300 310 320
pF1KE5 YQGWITLAVPPGEEQRYTCQVEHPGLDQPLIVIWEPSPSGTLVIGVISGIAVFVVILFIG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 YQGWITLAVPPGEEQRYTCQVEHPGLDQPLIVIWEPSPSGTLVIGVISGIAVFVVILFIG
180 190 200 210 220 230
330 340
pF1KE5 ILFIILRKRQGSRGAMGHYVLAERE
:::::::::::::::::::::::::
CCDS45 ILFIILRKRQGSRGAMGHYVLAERE
240 250 260
>>CCDS54974.1 HFE gene_id:3077|Hs108|chr6 (334 aa)
initn: 1468 init1: 1445 opt: 1466 Z-score: 1587.0 bits: 302.1 E(32554): 4.5e-82
Smith-Waterman score: 2282; 96.0% identity (96.0% similar) in 348 aa overlap (1-348:1-334)
10 20 30 40 50 60
pF1KE5 MGPRARPALLLLMLLQTAVLQGRLLRSHSLHYLFMGASEQDLGLSLFEALGYVDDQLFVF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 MGPRARPALLLLMLLQTAVLQGRLLRSHSLHYLFMGASEQDLGLSLFEALGYVDDQLFVF
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 YDHESRRVEPRTPWVSSRISSQMWLQLSQSLKGWDHMFTVDFWTIMENHNHSKESHTLQV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 YDHESRRVEPRTPWVSSRISSQMWLQLSQSLKGWDHMFTVDFWTIMENHNHSKESHTLQV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE5 ILGCEMQEDNSTEGYWKYGYDGQDHLEFCPDTLDWRAAEPRAWPTKLEWERHKIRARQNR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 ILGCEMQEDNSTEGYWKYGYDGQDHLEFCPDTLDWRAAEPRAWPTKLEWERHKIRARQNR
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE5 AYLERDCPAQLQQLLELGRGVLDQQVPPLVKVTHHVTSSVTTLRCRALNYYPQNITMKWL
:::::::::::::::::::::::::: ::::::::::::::::::::
CCDS54 AYLERDCPAQLQQLLELGRGVLDQQV--------------TTLRCRALNYYPQNITMKWL
190 200 210 220
250 260 270 280 290 300
pF1KE5 KDKQPMDAKEFEPKDVLPNGDGTYQGWITLAVPPGEEQRYTCQVEHPGLDQPLIVIWEPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 KDKQPMDAKEFEPKDVLPNGDGTYQGWITLAVPPGEEQRYTCQVEHPGLDQPLIVIWEPS
230 240 250 260 270 280
310 320 330 340
pF1KE5 PSGTLVIGVISGIAVFVVILFIGILFIILRKRQGSRGAMGHYVLAERE
::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 PSGTLVIGVISGIAVFVVILFIGILFIILRKRQGSRGAMGHYVLAERE
290 300 310 320 330
>>CCDS4579.1 HFE gene_id:3077|Hs108|chr6 (256 aa)
initn: 976 init1: 976 opt: 985 Z-score: 1070.3 bits: 206.1 E(32554): 2.7e-53
Smith-Waterman score: 1551; 73.6% identity (73.6% similar) in 348 aa overlap (1-348:1-256)
10 20 30 40 50 60
pF1KE5 MGPRARPALLLLMLLQTAVLQGRLLRSHSLHYLFMGASEQDLGLSLFEALGYVDDQLFVF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 MGPRARPALLLLMLLQTAVLQGRLLRSHSLHYLFMGASEQDLGLSLFEALGYVDDQLFVF
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 YDHESRRVEPRTPWVSSRISSQMWLQLSQSLKGWDHMFTVDFWTIMENHNHSKESHTLQV
:::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 YDHESRRVEPRTPWVSSRISSQMWLQLSQSLKGWDHMFTVDFWTIMENHNHSK-------
70 80 90 100 110
130 140 150 160 170 180
pF1KE5 ILGCEMQEDNSTEGYWKYGYDGQDHLEFCPDTLDWRAAEPRAWPTKLEWERHKIRARQNR
CCDS45 ------------------------------------------------------------
190 200 210 220 230 240
pF1KE5 AYLERDCPAQLQQLLELGRGVLDQQVPPLVKVTHHVTSSVTTLRCRALNYYPQNITMKWL
:::::::::::::::::::::::::::::::::::
CCDS45 -------------------------VPPLVKVTHHVTSSVTTLRCRALNYYPQNITMKWL
120 130 140
250 260 270 280 290 300
pF1KE5 KDKQPMDAKEFEPKDVLPNGDGTYQGWITLAVPPGEEQRYTCQVEHPGLDQPLIVIWEPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 KDKQPMDAKEFEPKDVLPNGDGTYQGWITLAVPPGEEQRYTCQVEHPGLDQPLIVIWEPS
150 160 170 180 190 200
310 320 330 340
pF1KE5 PSGTLVIGVISGIAVFVVILFIGILFIILRKRQGSRGAMGHYVLAERE
::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 PSGTLVIGVISGIAVFVVILFIGILFIILRKRQGSRGAMGHYVLAERE
210 220 230 240 250
>>CCDS4581.1 HFE gene_id:3077|Hs108|chr6 (168 aa)
initn: 1111 init1: 970 opt: 978 Z-score: 1065.3 bits: 204.5 E(32554): 5.1e-53
Smith-Waterman score: 978; 90.4% identity (93.4% similar) in 166 aa overlap (185-348:4-168)
160 170 180 190 200 210
pF1KE5 WRAAEPRAWPTKLEWERHKIRARQNRAYLERDCPAQLQQLLELGRGVLDQQV--PPLVKV
: :: : .: : .::. .. ::::::
CCDS45 MGPRARPALLLLML-LQTAVLQGRLLLPPLVKV
10 20 30
220 230 240 250 260 270
pF1KE5 THHVTSSVTTLRCRALNYYPQNITMKWLKDKQPMDAKEFEPKDVLPNGDGTYQGWITLAV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 THHVTSSVTTLRCRALNYYPQNITMKWLKDKQPMDAKEFEPKDVLPNGDGTYQGWITLAV
40 50 60 70 80 90
280 290 300 310 320 330
pF1KE5 PPGEEQRYTCQVEHPGLDQPLIVIWEPSPSGTLVIGVISGIAVFVVILFIGILFIILRKR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 PPGEEQRYTCQVEHPGLDQPLIVIWEPSPSGTLVIGVISGIAVFVVILFIGILFIILRKR
100 110 120 130 140 150
340
pF1KE5 QGSRGAMGHYVLAERE
::::::::::::::::
CCDS45 QGSRGAMGHYVLAERE
160
>>CCDS54975.1 HFE gene_id:3077|Hs108|chr6 (246 aa)
initn: 1058 init1: 883 opt: 907 Z-score: 986.5 bits: 190.5 E(32554): 1.3e-48
Smith-Waterman score: 1507; 93.6% identity (94.0% similar) in 235 aa overlap (114-348:26-246)
90 100 110 120 130 140
pF1KE5 WLQLSQSLKGWDHMFTVDFWTIMENHNHSKESHTLQVILGCEMQEDNSTEGYWKYGYDGQ
.:::::::::::::::::::::::::::::
CCDS54 MGPRARPALLLLMLLQTAVLQGRLLQSHTLQVILGCEMQEDNSTEGYWKYGYDGQ
10 20 30 40 50
150 160 170 180 190 200
pF1KE5 DHLEFCPDTLDWRAAEPRAWPTKLEWERHKIRARQNRAYLERDCPAQLQQLLELGRGVLD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 DHLEFCPDTLDWRAAEPRAWPTKLEWERHKIRARQNRAYLERDCPAQLQQLLELGRGVLD
60 70 80 90 100 110
210 220 230 240 250 260
pF1KE5 QQVPPLVKVTHHVTSSVTTLRCRALNYYPQNITMKWLKDKQPMDAKEFEPKDVLPNGDGT
::: :::::::::::::::::::::::::::::::::::::::::::
CCDS54 QQV--------------TTLRCRALNYYPQNITMKWLKDKQPMDAKEFEPKDVLPNGDGT
120 130 140 150 160
270 280 290 300 310 320
pF1KE5 YQGWITLAVPPGEEQRYTCQVEHPGLDQPLIVIWEPSPSGTLVIGVISGIAVFVVILFIG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 YQGWITLAVPPGEEQRYTCQVEHPGLDQPLIVIWEPSPSGTLVIGVISGIAVFVVILFIG
170 180 190 200 210 220
330 340
pF1KE5 ILFIILRKRQGSRGAMGHYVLAERE
:::::::::::::::::::::::::
CCDS54 ILFIILRKRQGSRGAMGHYVLAERE
230 240
>>CCDS47386.1 HFE gene_id:3077|Hs108|chr6 (242 aa)
initn: 888 init1: 888 opt: 894 Z-score: 972.6 bits: 187.9 E(32554): 7.5e-48
Smith-Waterman score: 1432; 69.5% identity (69.5% similar) in 348 aa overlap (1-348:1-242)
10 20 30 40 50 60
pF1KE5 MGPRARPALLLLMLLQTAVLQGRLLRSHSLHYLFMGASEQDLGLSLFEALGYVDDQLFVF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 MGPRARPALLLLMLLQTAVLQGRLLRSHSLHYLFMGASEQDLGLSLFEALGYVDDQLFVF
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 YDHESRRVEPRTPWVSSRISSQMWLQLSQSLKGWDHMFTVDFWTIMENHNHSKESHTLQV
:::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 YDHESRRVEPRTPWVSSRISSQMWLQLSQSLKGWDHMFTVDFWTIMENHNHSK-------
70 80 90 100 110
130 140 150 160 170 180
pF1KE5 ILGCEMQEDNSTEGYWKYGYDGQDHLEFCPDTLDWRAAEPRAWPTKLEWERHKIRARQNR
CCDS47 ------------------------------------------------------------
190 200 210 220 230 240
pF1KE5 AYLERDCPAQLQQLLELGRGVLDQQVPPLVKVTHHVTSSVTTLRCRALNYYPQNITMKWL
:::::::::::::::::::::
CCDS47 ---------------------------------------VTTLRCRALNYYPQNITMKWL
120 130
250 260 270 280 290 300
pF1KE5 KDKQPMDAKEFEPKDVLPNGDGTYQGWITLAVPPGEEQRYTCQVEHPGLDQPLIVIWEPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 KDKQPMDAKEFEPKDVLPNGDGTYQGWITLAVPPGEEQRYTCQVEHPGLDQPLIVIWEPS
140 150 160 170 180 190
310 320 330 340
pF1KE5 PSGTLVIGVISGIAVFVVILFIGILFIILRKRQGSRGAMGHYVLAERE
::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 PSGTLVIGVISGIAVFVVILFIGILFIILRKRQGSRGAMGHYVLAERE
200 210 220 230 240
>>CCDS1342.1 MR1 gene_id:3140|Hs108|chr1 (341 aa)
initn: 631 init1: 398 opt: 789 Z-score: 857.4 bits: 167.1 E(32554): 2e-41
Smith-Waterman score: 789; 37.7% identity (69.8% similar) in 324 aa overlap (10-332:7-326)
10 20 30 40 50 60
pF1KE5 MGPRARPALLLLMLLQTAVLQGRLLRSHSLHYLFMGASEQDLGLSLFEALGYVDDQLFVF
.:: :. . ... :.:::.:. .:.:. :. : ..::::.. ..
CCDS13 MGELMAFLLPLIIVLMVKHSDSRTHSLRYFRLGVSDPIHGVPEFISVGYVDSHPITT
10 20 30 40 50
70 80 90 100 110 120
pF1KE5 YDHESRRVEPRTPWVSSRISSQMWLQLSQSLKGWDHMFTVDFWTIMENHNHSKESHTLQV
:: .:. :::.::.. .. . : . .: :.::..:: :.. .....::: ::: :
CCDS13 YDSVTRQKEPRAPWMAENLAPDHWERYTQLLRGWQQMFKVELKRLQRHYNHSG-SHTYQR
60 70 80 90 100 110
130 140 150 160 170 180
pF1KE5 ILGCEMQEDNSTEGYWKYGYDGQDHLEFCPDTLDWRAAEPRAWPTKLEWERHKIRARQNR
..:::. ::.:: :. .:.::::: : : :::.: :.. : : :: .. . ..
CCDS13 MIGCELLEDGSTTGFLQYAYDGQDFLIFNKDTLSWLAVDNVAHTIKQAWEANQHELLYQK
120 130 140 150 160 170
190 200 210 220 230
pF1KE5 AYLERDCPAQLQQLLELGRGVLDQQVPPLVKVTHHVT-SSVTTLRCRALNYYPQNITMKW
.::..: : :...:: :. .:.. ::::.:... : .::.: :.: ..:: .: : :
CCDS13 NWLEEECIAWLKRFLEYGKDTLQRTEPPLVRVNRKETFPGVTALFCKAHGFYPPEIYMTW
180 190 200 210 220 230
240 250 260 270 280 290
pF1KE5 LKDKQPMDAKEFEPKDVLPNGDGTYQGWITLAVPPGEEQRYTCQVEHPGLDQPLIVIWEP
.:. . . ..:.. :.::.::::::.: .. . : . :.:.::: :. . : : :
CCDS13 MKNGEEI-VQEIDYGDILPSGDGTYQAWASIELDPQSSNLYSCHVEHCGVHMVLQVPQE-
240 250 260 270 280 290
300 310 320 330 340
pF1KE5 SPSGTLVIGVISGIAVFVVILFIGILFIILRKRQGSRGAMGHYVLAERE
: . ::. ..:: :.:..: :. .. :.:
CCDS13 SETIPLVMKAVSGSIVLVIVL-AGVGVLVWRRRPREQNGAIYLPTPDR
300 310 320 330 340
348 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 00:42:13 2016 done: Tue Nov 8 00:42:14 2016
Total Scan time: 1.780 Total Display time: 0.040
Function used was FASTA [36.3.4 Apr, 2011]