FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5418, 318 aa
  1>>>pF1KE5418 318 - 318 aa - 318 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.9754+/-0.000834; mu= 17.5935+/- 0.050
 mean_var=63.7604+/-13.523, 0's: 0 Z-trim(106.8): 25  B-trim: 21 in 1/50
 Lambda= 0.160620
 statistics sampled from 9178 (9191) to 9178 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.642), E-opt: 0.2 (0.282), width:  16
 Scan time:  2.090

The best scores are:                                      opt bits E(32554)
CCDS3498.1 SRD5A3 gene_id:79644|Hs108|chr4         ( 318) 2207 520.0 9.7e-148


>>CCDS3498.1 SRD5A3 gene_id:79644|Hs108|chr4              (318 aa)
 initn: 2207 init1: 2207 opt: 2207  Z-score: 2765.9  bits: 520.0 E(32554): 9.7e-148
Smith-Waterman score: 2207; 100.0% identity (100.0% similar) in 318 aa overlap (1-318:1-318)

               10        20        30        40        50        60
pF1KE5 MAPWAEAEHSALNPLRAVWLTLTAAFLLTLLLQLLPPGLLPGCAIFQDLIRYGKTKCGEP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 MAPWAEAEHSALNPLRAVWLTLTAAFLLTLLLQLLPPGLLPGCAIFQDLIRYGKTKCGEP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 SRPAACRAFDVPKRYFSHFYIISVLWNGFLLWCLTQSLFLGAPFPSWLHGLLRILGAAQF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 SRPAACRAFDVPKRYFSHFYIISVLWNGFLLWCLTQSLFLGAPFPSWLHGLLRILGAAQF
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 QGGELALSAFLVLVFLWLHSLRRLFECLYVSVFSNVMIHVVQYCFGLVYYVLVGLTVLSQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 QGGELALSAFLVLVFLWLHSLRRLFECLYVSVFSNVMIHVVQYCFGLVYYVLVGLTVLSQ
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE5 VPMDGRNAYITGKNLLMQARWFHILGMMMFIWSSAHQYKCHVILGNLRKNKAGVVIHCNH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 VPMDGRNAYITGKNLLMQARWFHILGMMMFIWSSAHQYKCHVILGNLRKNKAGVVIHCNH
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE5 RIPFGDWFEYVSSPNYLAELMIYVSMAVTFGFHNLTWWLVVTNVFFNQALSAFLSHQFYK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 RIPFGDWFEYVSSPNYLAELMIYVSMAVTFGFHNLTWWLVVTNVFFNQALSAFLSHQFYK
              250       260       270       280       290       300

              310        
pF1KE5 SKFVSYPKHRKAFLPFLF
       ::::::::::::::::::
CCDS34 SKFVSYPKHRKAFLPFLF
              310        




318 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 00:33:49 2016 done: Tue Nov  8 00:33:49 2016
 Total Scan time:  2.090 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]