FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5417, 329 aa
  1>>>pF1KE5417 329 - 329 aa - 329 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.4791+/-0.000745; mu= 16.4884+/- 0.045
 mean_var=85.3320+/-16.650, 0's: 0 Z-trim(110.5): 14  B-trim: 0 in 0/49
 Lambda= 0.138841
 statistics sampled from 11641 (11648) to 11641 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.729), E-opt: 0.2 (0.358), width:  16
 Scan time:  1.660

The best scores are:                                      opt bits E(32554)
CCDS13369.1 DNTTIP1 gene_id:116092|Hs108|chr20     ( 329) 2236 457.3 7.9e-129


>>CCDS13369.1 DNTTIP1 gene_id:116092|Hs108|chr20          (329 aa)
 initn: 2236 init1: 2236 opt: 2236  Z-score: 2426.3  bits: 457.3 E(32554): 7.9e-129
Smith-Waterman score: 2236; 100.0% identity (100.0% similar) in 329 aa overlap (1-329:1-329)

               10        20        30        40        50        60
pF1KE5 MGATGDAEQPRGPSGAERGGLELGDAGAAGQLVLTNPWNIMIKHRQVQRRGRRSQMTTSF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MGATGDAEQPRGPSGAERGGLELGDAGAAGQLVLTNPWNIMIKHRQVQRRGRRSQMTTSF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 TDPAISMDLLRAVLQPSINEEIQTVFNKYMKFFQKAALNVRDNVGEEVDAEQLIQEACRS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 TDPAISMDLLRAVLQPSINEEIQTVFNKYMKFFQKAALNVRDNVGEEVDAEQLIQEACRS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 CLEQAKLLFSDGEKVIPRLTHELPGIKRGRQAEEECAHRGSPLPKKRKGRPPGHILSSDR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 CLEQAKLLFSDGEKVIPRLTHELPGIKRGRQAEEECAHRGSPLPKKRKGRPPGHILSSDR
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE5 AAAGMVWKPKSCEPIRREGPKWDPARLNESTTFVLGSRANKALGMGGTRGRIYIKHPHLF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 AAAGMVWKPKSCEPIRREGPKWDPARLNESTTFVLGSRANKALGMGGTRGRIYIKHPHLF
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE5 KYAADPQDKHWLAEQHHMRATGGKMAYLLIEEDIRDLAASDDYRGCLDLKLEELKSFVLP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 KYAADPQDKHWLAEQHHMRATGGKMAYLLIEEDIRDLAASDDYRGCLDLKLEELKSFVLP
              250       260       270       280       290       300

              310       320         
pF1KE5 SWMVEKMRKYMETLRTENEHRAVEAPPQT
       :::::::::::::::::::::::::::::
CCDS13 SWMVEKMRKYMETLRTENEHRAVEAPPQT
              310       320         




329 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 00:33:07 2016 done: Tue Nov  8 00:33:07 2016
 Total Scan time:  1.660 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]