FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5415, 352 aa
  1>>>pF1KE5415 352 - 352 aa - 352 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.2043+/-0.000845; mu= 4.0140+/- 0.051
 mean_var=155.3640+/-30.406, 0's: 0 Z-trim(111.7): 17  B-trim: 7 in 1/54
 Lambda= 0.102896
 statistics sampled from 12599 (12607) to 12599 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.736), E-opt: 0.2 (0.387), width:  16
 Scan time:  2.160

The best scores are:                                      opt bits E(32554)
CCDS44805.1 RAD51AP1 gene_id:10635|Hs108|chr12     ( 352) 2265 347.6 9.2e-96
CCDS8529.1 RAD51AP1 gene_id:10635|Hs108|chr12      ( 335) 1690 262.2 4.4e-70


>>CCDS44805.1 RAD51AP1 gene_id:10635|Hs108|chr12          (352 aa)
 initn: 2265 init1: 2265 opt: 2265  Z-score: 1832.7  bits: 347.6 E(32554): 9.2e-96
Smith-Waterman score: 2265; 100.0% identity (100.0% similar) in 352 aa overlap (1-352:1-352)

               10        20        30        40        50        60
pF1KE5 MVRPVRHKKPVNYSQFDHSDSDDDFVSATVPLNKKSRTAPKELKQDKPKPNLNNLRKEEI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 MVRPVRHKKPVNYSQFDHSDSDDDFVSATVPLNKKSRTAPKELKQDKPKPNLNNLRKEEI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 PVQEKTPKKRLPEGTFSIPASAVPCTKMALDDKLYQRDLEVALALSVKELPTVTTNVQNS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 PVQEKTPKKRLPEGTFSIPASAVPCTKMALDDKLYQRDLEVALALSVKELPTVTTNVQNS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 QDKSIEKHGSSKIETMNKSPHISNCSVASDYLDLDKITVEDDVGGVQGKRKAASKAAAQQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 QDKSIEKHGSSKIETMNKSPHISNCSVASDYLDLDKITVEDDVGGVQGKRKAASKAAAQQ
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE5 RKILLEGSDGDSANDTEPDFAPGEDSEDDSDFCESEDNDEDFSMRKSKVKEIKKKEVKVK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 RKILLEGSDGDSANDTEPDFAPGEDSEDDSDFCESEDNDEDFSMRKSKVKEIKKKEVKVK
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE5 SPVEKKEKKSKSKCNALVTSVDSAPAAVKSESQSLPKKVSLSSDTTRKPLEIRSPSAESK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 SPVEKKEKKSKSKCNALVTSVDSAPAAVKSESQSLPKKVSLSSDTTRKPLEIRSPSAESK
              250       260       270       280       290       300

              310       320       330       340       350  
pF1KE5 KPKWVPPAASGGSRSSSSPLVVVSVKSPNQSLRLGLSRLARVKPLHPNATST
       ::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 KPKWVPPAASGGSRSSSSPLVVVSVKSPNQSLRLGLSRLARVKPLHPNATST
              310       320       330       340       350  

>>CCDS8529.1 RAD51AP1 gene_id:10635|Hs108|chr12           (335 aa)
 initn: 1687 init1: 1687 opt: 1690  Z-score: 1371.8  bits: 262.2 E(32554): 4.4e-70
Smith-Waterman score: 2105; 95.2% identity (95.2% similar) in 352 aa overlap (1-352:1-335)

               10        20        30        40        50        60
pF1KE5 MVRPVRHKKPVNYSQFDHSDSDDDFVSATVPLNKKSRTAPKELKQDKPKPNLNNLRKEEI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS85 MVRPVRHKKPVNYSQFDHSDSDDDFVSATVPLNKKSRTAPKELKQDKPKPNLNNLRKEEI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 PVQEKTPKKRLPEGTFSIPASAVPCTKMALDDKLYQRDLEVALALSVKELPTVTTNVQNS
       ::::::::::                 :::::::::::::::::::::::::::::::::
CCDS85 PVQEKTPKKR-----------------MALDDKLYQRDLEVALALSVKELPTVTTNVQNS
               70                         80        90       100   

              130       140       150       160       170       180
pF1KE5 QDKSIEKHGSSKIETMNKSPHISNCSVASDYLDLDKITVEDDVGGVQGKRKAASKAAAQQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS85 QDKSIEKHGSSKIETMNKSPHISNCSVASDYLDLDKITVEDDVGGVQGKRKAASKAAAQQ
           110       120       130       140       150       160   

              190       200       210       220       230       240
pF1KE5 RKILLEGSDGDSANDTEPDFAPGEDSEDDSDFCESEDNDEDFSMRKSKVKEIKKKEVKVK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS85 RKILLEGSDGDSANDTEPDFAPGEDSEDDSDFCESEDNDEDFSMRKSKVKEIKKKEVKVK
           170       180       190       200       210       220   

              250       260       270       280       290       300
pF1KE5 SPVEKKEKKSKSKCNALVTSVDSAPAAVKSESQSLPKKVSLSSDTTRKPLEIRSPSAESK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS85 SPVEKKEKKSKSKCNALVTSVDSAPAAVKSESQSLPKKVSLSSDTTRKPLEIRSPSAESK
           230       240       250       260       270       280   

              310       320       330       340       350  
pF1KE5 KPKWVPPAASGGSRSSSSPLVVVSVKSPNQSLRLGLSRLARVKPLHPNATST
       ::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS85 KPKWVPPAASGGSRSSSSPLVVVSVKSPNQSLRLGLSRLARVKPLHPNATST
           290       300       310       320       330     




352 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 00:31:41 2016 done: Tue Nov  8 00:31:42 2016
 Total Scan time:  2.160 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]