FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5409, 349 aa
  1>>>pF1KE5409 349 - 349 aa - 349 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.7998+/-0.000851; mu= 14.5200+/- 0.051
 mean_var=81.7628+/-16.344, 0's: 0 Z-trim(107.4): 15  B-trim: 0 in 0/53
 Lambda= 0.141839
 statistics sampled from 9548 (9554) to 9548 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.663), E-opt: 0.2 (0.293), width:  16
 Scan time:  2.260

The best scores are:                                      opt bits E(32554)
CCDS7591.1 TRUB1 gene_id:142940|Hs108|chr10        ( 349) 2208 461.4  5e-130
CCDS6897.1 TRUB2 gene_id:26995|Hs108|chr9          ( 331)  382 87.7 1.5e-17


>>CCDS7591.1 TRUB1 gene_id:142940|Hs108|chr10             (349 aa)
 initn: 2208 init1: 2208 opt: 2208  Z-score: 2447.8  bits: 461.4 E(32554): 5e-130
Smith-Waterman score: 2208; 100.0% identity (100.0% similar) in 349 aa overlap (1-349:1-349)

               10        20        30        40        50        60
pF1KE5 MAASEAAVVSSPSLKTDTSPVLETAGTVAAMAATPSARAAAAVVAAAARTGSEARVSKAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 MAASEAAVVSSPSLKTDTSPVLETAGTVAAMAATPSARAAAAVVAAAARTGSEARVSKAA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 LATKLLSLSGVFAVHKPKGPTSAELLNRLKEKLLAEAGMPSPEWTKRKKQTLKIGHGGTL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 LATKLLSLSGVFAVHKPKGPTSAELLNRLKEKLLAEAGMPSPEWTKRKKQTLKIGHGGTL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 DSAARGVLVVGIGSGTKMLTSMLSGSKRYTAIGELGKATDTLDSTGRVTEEKPYDKITQE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 DSAARGVLVVGIGSGTKMLTSMLSGSKRYTAIGELGKATDTLDSTGRVTEEKPYDKITQE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE5 DIEGILQKFTGNIMQVPPLYSALKKDGQRLSTLMKRGEVVEAKPARPVTVYSISLQKFQP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 DIEGILQKFTGNIMQVPPLYSALKKDGQRLSTLMKRGEVVEAKPARPVTVYSISLQKFQP
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE5 PFFTLDVECGGGFYIRSLVSDIGKELSSCANVLELTRTKQGPFTLEEHALPEDKWTIDDI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 PFFTLDVECGGGFYIRSLVSDIGKELSSCANVLELTRTKQGPFTLEEHALPEDKWTIDDI
              250       260       270       280       290       300

              310       320       330       340         
pF1KE5 AQSLEHCSSLFPAELALKKSKPESNEQVLSCEYITLNEPKREDDVIKTC
       :::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 AQSLEHCSSLFPAELALKKSKPESNEQVLSCEYITLNEPKREDDVIKTC
              310       320       330       340         

>>CCDS6897.1 TRUB2 gene_id:26995|Hs108|chr9               (331 aa)
 initn: 253 init1: 146 opt: 382  Z-score: 428.7  bits: 87.7 E(32554): 1.5e-17
Smith-Waterman score: 382; 34.1% identity (61.0% similar) in 223 aa overlap (112-330:89-309)

              90       100       110       120       130       140 
pF1KE5 SAELLNRLKEKLLAEAGMPSPEWTKRKKQTLKIGHGGTLDSAARGVLVVGIGSGTKMLTS
                                     ::.: :  ::. : ::::.:.: : ..::.
CCDS68 GSEEKELTLTATSVPSFINHPLVCGPAFAHLKVGVGHRLDAQASGVLVLGVGHGCRLLTD
       60        70        80        90       100       110        

               150       160       170       180       190         
pF1KE5 MLSG--SKRYTAIGELGKATDTLDSTGRVTEEKPYDKITQEDIEGILQKFTGNIMQVPPL
       : ..  .: ::. : :::::: .   ::..:.  ::..:.: .. ::  . :. ...  .
CCDS68 MYNAHLTKDYTVRGLLGKATDDFREDGRLVEKTTYDHVTREKLDRILAVIQGSHQKALVM
      120       130       140       150       160       170        

     200       210       220       230       240       250         
pF1KE5 YSALKKDGQRLSTLMKRGEVVEAKPARPVTVYSISLQKFQPPFFTLDVECGGGFY--IRS
       :: :    :.   .  :: ...     :. . .:    : :: : :.:.:       .:.
CCDS68 YSNLDLKTQEAYEMAVRG-LIRPMNKSPMLITGIRCLYFAPPEFLLEVQCMHETQKELRK
      180       190        200       210       220       230       

       260       270       280       290       300       310       
pF1KE5 LVSDIGKELSSCANVLELTRTKQGPFTLEEHALPEDKWTIDDIAQSLEHCSSLFPAELAL
       :: .:: ::.. :   .. ::..: :::.  :: . .: . .: ....  .    :::  
CCDS68 LVHEIGLELKTTAVCTQVRRTRDGFFTLDS-ALLRTQWDLTNIQDAIRAATPQVAAELEK
       240       250       260        270       280       290      

       320       330       340            
pF1KE5 KKSKPESNEQVLSCEYITLNEPKREDDVIKTC   
       . :   ...:. :                      
CCDS68 SLSPGLDTKQLPSPGWSWDSQGPSSTLGLERGAGQ
        300       310       320       330 




349 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 00:27:48 2016 done: Tue Nov  8 00:27:49 2016
 Total Scan time:  2.260 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]