Result of FASTA (ccds) for
pFN21AE5366
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE5366, 190 aa
1>>>pF1KE5366 190 - 190 aa - 190 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.0440+/-0.000803; mu= 14.4282+/- 0.048
mean_var=62.7508+/-12.009, 0's: 0 Z-trim(107.0): 21 B-trim: 68 in 1/50
Lambda= 0.161907
statistics sampled from 9286 (9304) to 9286 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.677), E-opt: 0.2 (0.286), width: 16
Scan time: 1.670
The best scores are: opt bits E(32554)
CCDS6505.2 IFNA13 gene_id:3447|Hs108|chr9 ( 190) 1253 300.9 3.1e-82
CCDS6508.1 IFNA1 gene_id:3439|Hs108|chr9 ( 189) 1251 300.4 4.2e-82
CCDS6502.1 IFNA5 gene_id:3442|Hs108|chr9 ( 189) 1064 256.8 6e-69
CCDS6504.1 IFNA6 gene_id:3443|Hs108|chr9 ( 189) 1037 250.5 4.7e-67
CCDS6501.1 IFNA14 gene_id:3448|Hs108|chr9 ( 189) 1033 249.5 9e-67
CCDS6497.1 IFNA21 gene_id:3452|Hs108|chr9 ( 189) 1001 242.0 1.6e-64
CCDS6498.1 IFNA4 gene_id:3441|Hs108|chr9 ( 189) 995 240.6 4.2e-64
CCDS6506.1 IFNA2 gene_id:3440|Hs108|chr9 ( 188) 994 240.4 5e-64
CCDS6500.1 IFNA17 gene_id:3451|Hs108|chr9 ( 189) 985 238.3 2.1e-63
CCDS6499.1 IFNA10 gene_id:3446|Hs108|chr9 ( 189) 985 238.3 2.1e-63
CCDS34995.1 IFNA7 gene_id:3444|Hs108|chr9 ( 189) 958 232.0 1.7e-61
CCDS34996.1 IFNA16 gene_id:3449|Hs108|chr9 ( 189) 939 227.6 3.7e-60
CCDS6507.1 IFNA8 gene_id:3445|Hs108|chr9 ( 189) 917 222.4 1.3e-58
CCDS6496.1 IFNW1 gene_id:3467|Hs108|chr9 ( 195) 667 164.0 5e-41
CCDS34997.1 IFNE gene_id:338376|Hs108|chr9 ( 208) 383 97.7 5e-21
CCDS6495.1 IFNB1 gene_id:3456|Hs108|chr9 ( 187) 310 80.6 6.2e-16
>>CCDS6505.2 IFNA13 gene_id:3447|Hs108|chr9 (190 aa)
initn: 1253 init1: 1253 opt: 1253 Z-score: 1589.9 bits: 300.9 E(32554): 3.1e-82
Smith-Waterman score: 1253; 99.5% identity (100.0% similar) in 190 aa overlap (1-190:1-190)
10 20 30 40 50 60
pF1KE5 MMASPFALLMVLVVLSCKSSCSLGCDLPETHSLDNRRTLMLLAQMSRISPSSCLMDRHDF
::::::::::.:::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 MMASPFALLMALVVLSCKSSCSLGCDLPETHSLDNRRTLMLLAQMSRISPSSCLMDRHDF
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 GFPQEEFDGNQFQKAPAISVLHELIQQIFNLFTTKDSSAAWDEDLLDKFCTELYQQLNDL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 GFPQEEFDGNQFQKAPAISVLHELIQQIFNLFTTKDSSAAWDEDLLDKFCTELYQQLNDL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE5 EACVMQEERVGETPLMNADSILAVKKYFRRITLYLTEKKYSPCAWEVVRAEIMRSLSLST
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 EACVMQEERVGETPLMNADSILAVKKYFRRITLYLTEKKYSPCAWEVVRAEIMRSLSLST
130 140 150 160 170 180
190
pF1KE5 NLQERLRRKE
::::::::::
CCDS65 NLQERLRRKE
190
>>CCDS6508.1 IFNA1 gene_id:3439|Hs108|chr9 (189 aa)
initn: 1251 init1: 1251 opt: 1251 Z-score: 1587.4 bits: 300.4 E(32554): 4.2e-82
Smith-Waterman score: 1251; 100.0% identity (100.0% similar) in 189 aa overlap (2-190:1-189)
10 20 30 40 50 60
pF1KE5 MMASPFALLMVLVVLSCKSSCSLGCDLPETHSLDNRRTLMLLAQMSRISPSSCLMDRHDF
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 MASPFALLMVLVVLSCKSSCSLGCDLPETHSLDNRRTLMLLAQMSRISPSSCLMDRHDF
10 20 30 40 50
70 80 90 100 110 120
pF1KE5 GFPQEEFDGNQFQKAPAISVLHELIQQIFNLFTTKDSSAAWDEDLLDKFCTELYQQLNDL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 GFPQEEFDGNQFQKAPAISVLHELIQQIFNLFTTKDSSAAWDEDLLDKFCTELYQQLNDL
60 70 80 90 100 110
130 140 150 160 170 180
pF1KE5 EACVMQEERVGETPLMNADSILAVKKYFRRITLYLTEKKYSPCAWEVVRAEIMRSLSLST
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 EACVMQEERVGETPLMNADSILAVKKYFRRITLYLTEKKYSPCAWEVVRAEIMRSLSLST
120 130 140 150 160 170
190
pF1KE5 NLQERLRRKE
::::::::::
CCDS65 NLQERLRRKE
180
>>CCDS6502.1 IFNA5 gene_id:3442|Hs108|chr9 (189 aa)
initn: 1064 init1: 1064 opt: 1064 Z-score: 1351.3 bits: 256.8 E(32554): 6e-69
Smith-Waterman score: 1064; 84.1% identity (94.2% similar) in 189 aa overlap (2-190:1-189)
10 20 30 40 50 60
pF1KE5 MMASPFALLMVLVVLSCKSSCSLGCDLPETHSLDNRRTLMLLAQMSRISPSSCLMDRHDF
:: ::.:::.::::.::: ::::::::.::::.::::::..:::.:::: ::: :::::
CCDS65 MALPFVLLMALVVLNCKSICSLGCDLPQTHSLSNRRTLMIMAQMGRISPFSCLKDRHDF
10 20 30 40 50
70 80 90 100 110 120
pF1KE5 GFPQEEFDGNQFQKAPAISVLHELIQQIFNLFTTKDSSAAWDEDLLDKFCTELYQQLNDL
::::::::::::::: :::::::.::: ::::.::::::.::: ::::: ::::::::::
CCDS65 GFPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTKDSSATWDETLLDKFYTELYQQLNDL
60 70 80 90 100 110
130 140 150 160 170 180
pF1KE5 EACVMQEERVGETPLMNADSILAVKKYFRRITLYLTEKKYSPCAWEVVRAEIMRSLSLST
:::.::: : .:::::.::::.:.:::.::::::::::::::::::::::::::.:::.
CCDS65 EACMMQEVGVEDTPLMNVDSILTVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSLSA
120 130 140 150 160 170
190
pF1KE5 NLQERLRRKE
::::::::::
CCDS65 NLQERLRRKE
180
>>CCDS6504.1 IFNA6 gene_id:3443|Hs108|chr9 (189 aa)
initn: 1037 init1: 1037 opt: 1037 Z-score: 1317.3 bits: 250.5 E(32554): 4.7e-67
Smith-Waterman score: 1037; 84.7% identity (90.5% similar) in 189 aa overlap (2-190:1-189)
10 20 30 40 50 60
pF1KE5 MMASPFALLMVLVVLSCKSSCSLGCDLPETHSLDNRRTLMLLAQMSRISPSSCLMDRHDF
:: ::::::.:::::::::::: ::::.:::: .:::.:::::: ::: ::: :::::
CCDS65 MALPFALLMALVVLSCKSSCSLDCDLPQTHSLGHRRTMMLLAQMRRISLFSCLKDRHDF
10 20 30 40 50
70 80 90 100 110 120
pF1KE5 GFPQEEFDGNQFQKAPAISVLHELIQQIFNLFTTKDSSAAWDEDLLDKFCTELYQQLNDL
:::::::::::::: :::::::.::: ::::.:::::.:::: ::::. ::::::::::
CCDS65 RFPQEEFDGNQFQKAEAISVLHEVIQQTFNLFSTKDSSVAWDERLLDKLYTELYQQLNDL
60 70 80 90 100 110
130 140 150 160 170 180
pF1KE5 EACVMQEERVGETPLMNADSILAVKKYFRRITLYLTEKKYSPCAWEVVRAEIMRSLSLST
::::::: :: ::::: ::::::.:::.::::::::::::::::::::::::::.: :
CCDS65 EACVMQEVWVGGTPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSSSR
120 130 140 150 160 170
190
pF1KE5 NLQERLRRKE
::::::::::
CCDS65 NLQERLRRKE
180
>>CCDS6501.1 IFNA14 gene_id:3448|Hs108|chr9 (189 aa)
initn: 1092 init1: 1033 opt: 1033 Z-score: 1312.2 bits: 249.5 E(32554): 9e-67
Smith-Waterman score: 1033; 82.0% identity (91.5% similar) in 189 aa overlap (2-190:1-189)
10 20 30 40 50 60
pF1KE5 MMASPFALLMVLVVLSCKSSCSLGCDLPETHSLDNRRTLMLLAQMSRISPSSCLMDRHDF
:: ::::.:.::::::::::::::.: .::::.:::::::.::: :::: ::: :::::
CCDS65 MALPFALMMALVVLSCKSSCSLGCNLSQTHSLNNRRTLMLMAQMRRISPFSCLKDRHDF
10 20 30 40 50
70 80 90 100 110 120
pF1KE5 GFPQEEFDGNQFQKAPAISVLHELIQQIFNLFTTKDSSAAWDEDLLDKFCTELYQQLNDL
:::::::::::::: :::::::..:: ::::.::.::::::: ::.:: ::.::.:::
CCDS65 EFPQEEFDGNQFQKAQAISVLHEMMQQTFNLFSTKNSSAAWDETLLEKFYIELFQQMNDL
60 70 80 90 100 110
130 140 150 160 170 180
pF1KE5 EACVMQEERVGETPLMNADSILAVKKYFRRITLYLTEKKYSPCAWEVVRAEIMRSLSLST
::::.:: : :::::: ::::::::::.:::::: :::::::::::::::::::::.::
CCDS65 EACVIQEVGVEETPLMNEDSILAVKKYFQRITLYLMEKKYSPCAWEVVRAEIMRSLSFST
120 130 140 150 160 170
190
pF1KE5 NLQERLRRKE
:::.:::::.
CCDS65 NLQKRLRRKD
180
>>CCDS6497.1 IFNA21 gene_id:3452|Hs108|chr9 (189 aa)
initn: 1001 init1: 1001 opt: 1001 Z-score: 1271.8 bits: 242.0 E(32554): 1.6e-64
Smith-Waterman score: 1001; 81.0% identity (91.5% similar) in 189 aa overlap (2-190:1-189)
10 20 30 40 50 60
pF1KE5 MMASPFALLMVLVVLSCKSSCSLGCDLPETHSLDNRRTLMLLAQMSRISPSSCLMDRHDF
:: :.:::...::: :: ::::::::.:::: :::.:.:::::.:::: ::: :::::
CCDS64 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISPFSCLKDRHDF
10 20 30 40 50
70 80 90 100 110 120
pF1KE5 GFPQEEFDGNQFQKAPAISVLHELIQQIFNLFTTKDSSAAWDEDLLDKFCTELYQQLNDL
::::::::::::::: :::::::.::: ::::.::::::.:...::.:: ::: ::::::
CCDS64 GFPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTKDSSATWEQSLLEKFSTELNQQLNDL
60 70 80 90 100 110
130 140 150 160 170 180
pF1KE5 EACVMQEERVGETPLMNADSILAVKKYFRRITLYLTEKKYSPCAWEVVRAEIMRSLSLST
::::.:: : ::::::.::::::::::.::::::::::::::::::::::::::.:::
CCDS64 EACVIQEVGVEETPLMNVDSILAVKKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSLSK
120 130 140 150 160 170
190
pF1KE5 NLQERLRRKE
.::::::::
CCDS64 IFQERLRRKE
180
>>CCDS6498.1 IFNA4 gene_id:3441|Hs108|chr9 (189 aa)
initn: 1010 init1: 995 opt: 995 Z-score: 1264.2 bits: 240.6 E(32554): 4.2e-64
Smith-Waterman score: 995; 79.9% identity (92.1% similar) in 189 aa overlap (2-190:1-189)
10 20 30 40 50 60
pF1KE5 MMASPFALLMVLVVLSCKSSCSLGCDLPETHSLDNRRTLMLLAQMSRISPSSCLMDRHDF
:: :.:::...::: :: ::::::::.:::: :::.:.:::::.::: ::: :::::
CCDS64 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISHFSCLKDRHDF
10 20 30 40 50
70 80 90 100 110 120
pF1KE5 GFPQEEFDGNQFQKAPAISVLHELIQQIFNLFTTKDSSAAWDEDLLDKFCTELYQQLNDL
:::.:::::.::::: :::::::.::: ::::.:.::::::...::.:: ::::::::::
CCDS64 GFPEEEFDGHQFQKAQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDL
60 70 80 90 100 110
130 140 150 160 170 180
pF1KE5 EACVMQEERVGETPLMNADSILAVKKYFRRITLYLTEKKYSPCAWEVVRAEIMRSLSLST
::::.:: : :::::: ::::::.:::.::::::::::::::::::::::::::::.::
CCDS64 EACVIQEVGVEETPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSLSFST
120 130 140 150 160 170
190
pF1KE5 NLQERLRRKE
:::.:::::.
CCDS64 NLQKRLRRKD
180
>>CCDS6506.1 IFNA2 gene_id:3440|Hs108|chr9 (188 aa)
initn: 992 init1: 650 opt: 994 Z-score: 1263.0 bits: 240.4 E(32554): 5e-64
Smith-Waterman score: 994; 82.0% identity (89.4% similar) in 189 aa overlap (2-190:1-188)
10 20 30 40 50 60
pF1KE5 MMASPFALLMVLVVLSCKSSCSLGCDLPETHSLDNRRTLMLLAQMSRISPSSCLMDRHDF
:: ::::..:.:::::::::.:::::.:::: .:::::::::: ::: ::: :::::
CCDS65 MALTFALLVALLVLSCKSSCSVGCDLPQTHSLGSRRTLMLLAQMRRISLFSCLKDRHDF
10 20 30 40 50
70 80 90 100 110 120
pF1KE5 GFPQEEFDGNQFQKAPAISVLHELIQQIFNLFTTKDSSAAWDEDLLDKFCTELYQQLNDL
::::::: ::::::: .: ::::.::::::::.:::::::::: ::::: ::::::::::
CCDS65 GFPQEEF-GNQFQKAETIPVLHEMIQQIFNLFSTKDSSAAWDETLLDKFYTELYQQLNDL
60 70 80 90 100 110
130 140 150 160 170 180
pF1KE5 EACVMQEERVGETPLMNADSILAVKKYFRRITLYLTEKKYSPCAWEVVRAEIMRSLSLST
::::.: : :::::. ::::::.:::.:::::: :::::::::::::::::::.::::
CCDS65 EACVIQGVGVTETPLMKEDSILAVRKYFQRITLYLKEKKYSPCAWEVVRAEIMRSFSLST
120 130 140 150 160 170
190
pF1KE5 NLQERLRRKE
:::: :: ::
CCDS65 NLQESLRSKE
180
>>CCDS6500.1 IFNA17 gene_id:3451|Hs108|chr9 (189 aa)
initn: 1005 init1: 985 opt: 985 Z-score: 1251.6 bits: 238.3 E(32554): 2.1e-63
Smith-Waterman score: 985; 78.8% identity (92.1% similar) in 189 aa overlap (2-190:1-189)
10 20 30 40 50 60
pF1KE5 MMASPFALLMVLVVLSCKSSCSLGCDLPETHSLDNRRTLMLLAQMSRISPSSCLMDRHDF
:: :.:::...::: :: ::::::::.:::: :::.:.:::::.:::: ::: :::::
CCDS65 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISPFSCLKDRHDF
10 20 30 40 50
70 80 90 100 110 120
pF1KE5 GFPQEEFDGNQFQKAPAISVLHELIQQIFNLFTTKDSSAAWDEDLLDKFCTELYQQLNDL
:.::::::::::::. :::::::.::: ::::.:.::::::...::.:: ::::::::.:
CCDS65 GLPQEEFDGNQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNNL
60 70 80 90 100 110
130 140 150 160 170 180
pF1KE5 EACVMQEERVGETPLMNADSILAVKKYFRRITLYLTEKKYSPCAWEVVRAEIMRSLSLST
::::.:: . :::::: ::::::.:::.::::::::::::::::::::::::::::.::
CCDS65 EACVIQEVGMEETPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSLSFST
120 130 140 150 160 170
190
pF1KE5 NLQERLRRKE
:::. ::::.
CCDS65 NLQKILRRKD
180
>>CCDS6499.1 IFNA10 gene_id:3446|Hs108|chr9 (189 aa)
initn: 1000 init1: 985 opt: 985 Z-score: 1251.6 bits: 238.3 E(32554): 2.1e-63
Smith-Waterman score: 985; 78.8% identity (91.5% similar) in 189 aa overlap (2-190:1-189)
10 20 30 40 50 60
pF1KE5 MMASPFALLMVLVVLSCKSSCSLGCDLPETHSLDNRRTLMLLAQMSRISPSSCLMDRHDF
:: :.:::...::: :: ::::::::.:::: :::.:.::.::.:::: ::: :::::
CCDS64 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLGQMGRISPFSCLKDRHDF
10 20 30 40 50
70 80 90 100 110 120
pF1KE5 GFPQEEFDGNQFQKAPAISVLHELIQQIFNLFTTKDSSAAWDEDLLDKFCTELYQQLNDL
.::::::::::::: :::::::.::: ::::.:.::::::...::.:: ::::::::::
CCDS64 RIPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDL
60 70 80 90 100 110
130 140 150 160 170 180
pF1KE5 EACVMQEERVGETPLMNADSILAVKKYFRRITLYLTEKKYSPCAWEVVRAEIMRSLSLST
::::.:: : :::::: ::::::.:::.:::::: :.:::::::::::::::::::.::
CCDS64 EACVIQEVGVEETPLMNEDSILAVRKYFQRITLYLIERKYSPCAWEVVRAEIMRSLSFST
120 130 140 150 160 170
190
pF1KE5 NLQERLRRKE
:::.:::::.
CCDS64 NLQKRLRRKD
180
190 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 00:09:09 2016 done: Tue Nov 8 00:09:09 2016
Total Scan time: 1.670 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]