FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5364, 299 aa
  1>>>pF1KE5364 299 - 299 aa - 299 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.4025+/-0.000767; mu= 15.8159+/- 0.046
 mean_var=72.3819+/-14.940, 0's: 0 Z-trim(109.0): 11  B-trim: 50 in 1/49
 Lambda= 0.150751
 statistics sampled from 10565 (10567) to 10565 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.692), E-opt: 0.2 (0.325), width:  16
 Scan time:  1.690

The best scores are:                                      opt bits E(32554)
CCDS12349.1 TMEM38A gene_id:79041|Hs108|chr19      ( 299) 2042 452.9 1.4e-127
CCDS6768.1 TMEM38B gene_id:55151|Hs108|chr9        ( 291)  836 190.6 1.2e-48


>>CCDS12349.1 TMEM38A gene_id:79041|Hs108|chr19           (299 aa)
 initn: 2042 init1: 2042 opt: 2042  Z-score: 2404.1  bits: 452.9 E(32554): 1.4e-127
Smith-Waterman score: 2042; 100.0% identity (100.0% similar) in 299 aa overlap (1-299:1-299)

               10        20        30        40        50        60
pF1KE5 MELLSALSLGELALSFSRVPLFPVFDLSYFIVSILYLKYEPGAVELSRRHPIASWLCAML
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MELLSALSLGELALSFSRVPLFPVFDLSYFIVSILYLKYEPGAVELSRRHPIASWLCAML
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 HCFGSYILADLLLGEPLIDYFSNNSSILLASAVWYLIFFCPLDLFYKCVCFLPVKLIFVA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 HCFGSYILADLLLGEPLIDYFSNNSSILLASAVWYLIFFCPLDLFYKCVCFLPVKLIFVA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 MKEVVRVRKIAVGIHHAHHHYHHGWFVMIATGWVKGSGVALMSNFEQLLRGVWKPETNEI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MKEVVRVRKIAVGIHHAHHHYHHGWFVMIATGWVKGSGVALMSNFEQLLRGVWKPETNEI
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE5 LHMSFPTKASLYGAILFTLQQTRWLPVSKASLIFIFTLFMVSCKVFLTATHSHSSPFDAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 LHMSFPTKASLYGAILFTLQQTRWLPVSKASLIFIFTLFMVSCKVFLTATHSHSSPFDAL
              190       200       210       220       230       240

              250       260       270       280       290         
pF1KE5 EGYICPVLFGSACGGDHHHDNHGGSHSGGGPGAQHSAMPAKSKEELSEGSRKKKAKKAD
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 EGYICPVLFGSACGGDHHHDNHGGSHSGGGPGAQHSAMPAKSKEELSEGSRKKKAKKAD
              250       260       270       280       290         

>>CCDS6768.1 TMEM38B gene_id:55151|Hs108|chr9             (291 aa)
 initn: 829 init1: 829 opt: 836  Z-score: 986.8  bits: 190.6 E(32554): 1.2e-48
Smith-Waterman score: 836; 41.5% identity (76.2% similar) in 294 aa overlap (11-299:7-291)

               10        20        30        40        50        60
pF1KE5 MELLSALSLGELALSFSRVPLFPVFDLSYFIVSILYLKYEPGAVELSRRHPIASWLCAML
                 ::::.:::. .:: ::.....::.. .: .:::. :. ..::.::. :::
CCDS67     MDSPWDELALAFSRTSMFPFFDIAHYLVSVMAVKRQPGAAALAWKNPISSWFTAML
                   10        20        30        40        50      

               70        80        90       100       110       120
pF1KE5 HCFGSYILADLLLGEPLIDYFSNNSSILLASAVWYLIFFCPLDLFYKCVCFLPVKLIFVA
       ::::. ::. :::.:: . ...:...:::::..::. :::: ::  .   .:::.:.  .
CCDS67 HCFGGGILSCLLLAEPPLKFLANHTNILLASSIWYITFFCPHDLVSQGYSYLPVQLLASG
         60        70        80        90       100       110      

              130       140       150       160       170       180
pF1KE5 MKEVVRVRKIAVGIHHAHHHYHHGWFVMIATGWVKGSGVALMSNFEQLLRGVWKPETNEI
       ::::.:. ::. :. ::. .:..::.:::: ::..:.: ....:::.:..: :::: .: 
CCDS67 MKEVTRTWKIVGGVTHANSYYKNGWIVMIAIGWARGAGGTIITNFERLVKGDWKPEGDEW
        120       130       140       150       160       170      

              190       200       210       220       230       240
pF1KE5 LHMSFPTKASLYGAILFTLQQTRWLPVSKASLIFIFTLFMVSCKVFLTATHSHSSPFDAL
       :.::.:.:..: :...::.:.:. : .:: .:.:..:.:.:. :. . .:.. .  :  .
CCDS67 LKMSYPAKVTLLGSVIFTFQHTQHLAISKHNLMFLYTIFIVATKITMMTTQTSTMTFAPF
        180       190       200       210       220       230      

              250            260       270       280       290     
pF1KE5 EGYICPVLFG-----SACGGDHHHDNHGGSHSGGGPGAQHSAMPAKSKEELSEGSRKKKA
       :  .  .:::     :.:    .. ... : :.:      ... .:  .  :.. .::..
CCDS67 EDTLSWMLFGWQQPFSSC----EKKSEAKSPSNGV-----GSLASKPVDVASDNVKKKHT
        240       250           260            270       280       

           
pF1KE5 KKAD
       :: .
CCDS67 KKNE
       290 




299 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 00:08:37 2016 done: Tue Nov  8 00:08:37 2016
 Total Scan time:  1.690 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]