Result of FASTA (omim) for
pFN21AE5362
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE5362, 275 aa
1>>>pF1KE5362 275 - 275 aa - 275 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.2577+/-0.000351; mu= 11.7353+/- 0.022
mean_var=106.8823+/-22.280, 0's: 0 Z-trim(116.3): 37 B-trim: 150 in 1/53
Lambda= 0.124057
statistics sampled from 27305 (27343) to 27305 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.679), E-opt: 0.2 (0.321), width: 16
Scan time: 6.910
The best scores are: opt bits E(85289)
NP_001136122 (OMIM: 611208) heterogeneous nuclear ( 537) 1754 324.4 2.7e-88
XP_005264697 (OMIM: 611208) PREDICTED: heterogeneo ( 590) 1754 324.5 2.9e-88
XP_011531467 (OMIM: 611208) PREDICTED: heterogeneo ( 571) 1740 321.9 1.6e-87
NP_612403 (OMIM: 611208) heterogeneous nuclear rib ( 542) 1737 321.4 2.3e-87
XP_011531468 (OMIM: 611208) PREDICTED: heterogeneo ( 570) 1737 321.4 2.4e-87
XP_005264696 (OMIM: 611208) PREDICTED: heterogeneo ( 595) 1737 321.4 2.4e-87
NP_001524 (OMIM: 603083) heterogeneous nuclear rib ( 589) 963 182.9 1.2e-45
XP_011525188 (OMIM: 603083) PREDICTED: heterogeneo ( 518) 921 175.3 2e-43
XP_011525189 (OMIM: 603083) PREDICTED: heterogeneo ( 532) 913 173.9 5.6e-43
NP_001005335 (OMIM: 603083) heterogeneous nuclear ( 456) 747 144.1 4.3e-34
XP_011525191 (OMIM: 603083) PREDICTED: heterogeneo ( 456) 747 144.1 4.3e-34
XP_011525190 (OMIM: 603083) PREDICTED: heterogeneo ( 528) 500 100.0 9.8e-21
NP_114368 (OMIM: 600693) polypyrimidine tract-bind ( 531) 283 61.2 4.9e-09
XP_005259655 (OMIM: 600693) PREDICTED: polypyrimid ( 533) 283 61.2 4.9e-09
NP_114367 (OMIM: 600693) polypyrimidine tract-bind ( 550) 283 61.2 5e-09
NP_002810 (OMIM: 600693) polypyrimidine tract-bind ( 557) 283 61.2 5e-09
XP_005259654 (OMIM: 600693) PREDICTED: polypyrimid ( 559) 283 61.2 5.1e-09
NP_001287919 (OMIM: 608449) polypyrimidine tract-b ( 480) 270 58.8 2.3e-08
NP_067013 (OMIM: 608449) polypyrimidine tract-bind ( 531) 270 58.8 2.4e-08
NP_001287918 (OMIM: 608449) polypyrimidine tract-b ( 532) 270 58.8 2.4e-08
NP_001287917 (OMIM: 608449) polypyrimidine tract-b ( 536) 270 58.8 2.5e-08
NP_001287914 (OMIM: 608449) polypyrimidine tract-b ( 537) 270 58.8 2.5e-08
XP_011540177 (OMIM: 608449) PREDICTED: polypyrimid ( 539) 270 58.8 2.5e-08
NP_001287915 (OMIM: 608449) polypyrimidine tract-b ( 540) 270 58.8 2.5e-08
XP_011540176 (OMIM: 608449) PREDICTED: polypyrimid ( 544) 270 58.8 2.5e-08
XP_011540178 (OMIM: 608449) PREDICTED: polypyrimid ( 545) 270 58.8 2.5e-08
XP_016857440 (OMIM: 608449) PREDICTED: polypyrimid ( 548) 270 58.8 2.5e-08
NP_001287916 (OMIM: 608449) polypyrimidine tract-b ( 548) 270 58.8 2.5e-08
XP_016870854 (OMIM: 607527) PREDICTED: polypyrimid ( 452) 255 56.1 1.4e-07
NP_001231825 (OMIM: 607527) polypyrimidine tract-b ( 457) 255 56.1 1.4e-07
XP_006717409 (OMIM: 607527) PREDICTED: polypyrimid ( 521) 255 56.1 1.5e-07
NP_001157260 (OMIM: 607527) polypyrimidine tract-b ( 524) 255 56.1 1.6e-07
NP_001231826 (OMIM: 607527) polypyrimidine tract-b ( 547) 255 56.2 1.6e-07
NP_005147 (OMIM: 607527) polypyrimidine tract-bind ( 552) 255 56.2 1.6e-07
NP_001157262 (OMIM: 607527) polypyrimidine tract-b ( 555) 255 56.2 1.6e-07
NP_001231827 (OMIM: 607527) polypyrimidine tract-b ( 558) 255 56.2 1.6e-07
XP_011517567 (OMIM: 607527) PREDICTED: polypyrimid ( 561) 255 56.2 1.6e-07
>>NP_001136122 (OMIM: 611208) heterogeneous nuclear ribo (537 aa)
initn: 1821 init1: 1754 opt: 1754 Z-score: 1706.1 bits: 324.4 E(85289): 2.7e-88
Smith-Waterman score: 1754; 99.6% identity (99.6% similar) in 264 aa overlap (1-264:1-264)
10 20 30 40 50 60
pF1KE5 MLARETYEEDREYESQAKRLKTEEGEIDYSAEEGENRREATPRGGGDGGGGGRSFSQPEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MLARETYEEDREYESQAKRLKTEEGEIDYSAEEGENRREATPRGGGDGGGGGRSFSQPEA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 GGSHHKVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GGSHHKVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE5 ECVTFAADEPVYIAGQQAFFNYSTSKRITRPGNTDDPSGGNKVLLLSIQNPLYPITVDVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ECVTFAADEPVYIAGQQAFFNYSTSKRITRPGNTDDPSGGNKVLLLSIQNPLYPITVDVL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE5 YTVCNPVGKVQRIVIFKRNGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YTVCNPVGKVQRIVIFKRNGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPT
190 200 210 220 230 240
250 260 270
pF1KE5 RLNVIRNDNDSWDYTKPYLGRRGRYFIHFRMYLIC
:::::::::::::::::::::: :
NP_001 RLNVIRNDNDSWDYTKPYLGRRDRGKGRQRQAILGEHPSSFRHDGYGSHGPLLPLPSRYR
250 260 270 280 290 300
>>XP_005264697 (OMIM: 611208) PREDICTED: heterogeneous n (590 aa)
initn: 1821 init1: 1754 opt: 1754 Z-score: 1705.5 bits: 324.5 E(85289): 2.9e-88
Smith-Waterman score: 1754; 99.6% identity (99.6% similar) in 264 aa overlap (1-264:1-264)
10 20 30 40 50 60
pF1KE5 MLARETYEEDREYESQAKRLKTEEGEIDYSAEEGENRREATPRGGGDGGGGGRSFSQPEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MLARETYEEDREYESQAKRLKTEEGEIDYSAEEGENRREATPRGGGDGGGGGRSFSQPEA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 GGSHHKVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 GGSHHKVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE5 ECVTFAADEPVYIAGQQAFFNYSTSKRITRPGNTDDPSGGNKVLLLSIQNPLYPITVDVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 ECVTFAADEPVYIAGQQAFFNYSTSKRITRPGNTDDPSGGNKVLLLSIQNPLYPITVDVL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE5 YTVCNPVGKVQRIVIFKRNGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 YTVCNPVGKVQRIVIFKRNGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPT
190 200 210 220 230 240
250 260 270
pF1KE5 RLNVIRNDNDSWDYTKPYLGRRGRYFIHFRMYLIC
:::::::::::::::::::::: :
XP_005 RLNVIRNDNDSWDYTKPYLGRRDRGKGRQRQAILGEHPSSFRHDGYGSHGPLLPLPSRYR
250 260 270 280 290 300
>>XP_011531467 (OMIM: 611208) PREDICTED: heterogeneous n (571 aa)
initn: 1807 init1: 1740 opt: 1740 Z-score: 1692.1 bits: 321.9 E(85289): 1.6e-87
Smith-Waterman score: 1740; 99.2% identity (99.6% similar) in 262 aa overlap (4-265:9-270)
10 20 30 40 50
pF1KE5 MLARETYEEDREYESQAKRLKTEEGEIDYSAEEGENRREATPRGGGDGGGGGRSF
::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MSSSSSSPRETYEEDREYESQAKRLKTEEGEIDYSAEEGENRREATPRGGGDGGGGGRSF
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE5 SQPEAGGSHHKVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFEN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SQPEAGGSHHKVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFEN
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE5 IDSAKECVTFAADEPVYIAGQQAFFNYSTSKRITRPGNTDDPSGGNKVLLLSIQNPLYPI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 IDSAKECVTFAADEPVYIAGQQAFFNYSTSKRITRPGNTDDPSGGNKVLLLSIQNPLYPI
130 140 150 160 170 180
180 190 200 210 220 230
pF1KE5 TVDVLYTVCNPVGKVQRIVIFKRNGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TVDVLYTVCNPVGKVQRIVIFKRNGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIE
190 200 210 220 230 240
240 250 260 270
pF1KE5 YARPTRLNVIRNDNDSWDYTKPYLGRRGRYFIHFRMYLIC
:::::::::::::::::::::::::::: .
XP_011 YARPTRLNVIRNDNDSWDYTKPYLGRRGSHGPLLPLPSRYRMGSRDTPELVAYPLPQASS
250 260 270 280 290 300
>>NP_612403 (OMIM: 611208) heterogeneous nuclear ribonuc (542 aa)
initn: 1804 init1: 1737 opt: 1737 Z-score: 1689.6 bits: 321.4 E(85289): 2.3e-87
Smith-Waterman score: 1737; 99.6% identity (99.6% similar) in 261 aa overlap (4-264:9-269)
10 20 30 40 50
pF1KE5 MLARETYEEDREYESQAKRLKTEEGEIDYSAEEGENRREATPRGGGDGGGGGRSF
::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_612 MSSSSSSPRETYEEDREYESQAKRLKTEEGEIDYSAEEGENRREATPRGGGDGGGGGRSF
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE5 SQPEAGGSHHKVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFEN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_612 SQPEAGGSHHKVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFEN
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE5 IDSAKECVTFAADEPVYIAGQQAFFNYSTSKRITRPGNTDDPSGGNKVLLLSIQNPLYPI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_612 IDSAKECVTFAADEPVYIAGQQAFFNYSTSKRITRPGNTDDPSGGNKVLLLSIQNPLYPI
130 140 150 160 170 180
180 190 200 210 220 230
pF1KE5 TVDVLYTVCNPVGKVQRIVIFKRNGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_612 TVDVLYTVCNPVGKVQRIVIFKRNGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIE
190 200 210 220 230 240
240 250 260 270
pF1KE5 YARPTRLNVIRNDNDSWDYTKPYLGRRGRYFIHFRMYLIC
::::::::::::::::::::::::::: :
NP_612 YARPTRLNVIRNDNDSWDYTKPYLGRRDRGKGRQRQAILGEHPSSFRHDGYGSHGPLLPL
250 260 270 280 290 300
>>XP_011531468 (OMIM: 611208) PREDICTED: heterogeneous n (570 aa)
initn: 1804 init1: 1737 opt: 1737 Z-score: 1689.3 bits: 321.4 E(85289): 2.4e-87
Smith-Waterman score: 1737; 99.6% identity (99.6% similar) in 261 aa overlap (4-264:9-269)
10 20 30 40 50
pF1KE5 MLARETYEEDREYESQAKRLKTEEGEIDYSAEEGENRREATPRGGGDGGGGGRSF
::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MSSSSSSPRETYEEDREYESQAKRLKTEEGEIDYSAEEGENRREATPRGGGDGGGGGRSF
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE5 SQPEAGGSHHKVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFEN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SQPEAGGSHHKVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFEN
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE5 IDSAKECVTFAADEPVYIAGQQAFFNYSTSKRITRPGNTDDPSGGNKVLLLSIQNPLYPI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 IDSAKECVTFAADEPVYIAGQQAFFNYSTSKRITRPGNTDDPSGGNKVLLLSIQNPLYPI
130 140 150 160 170 180
180 190 200 210 220 230
pF1KE5 TVDVLYTVCNPVGKVQRIVIFKRNGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TVDVLYTVCNPVGKVQRIVIFKRNGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIE
190 200 210 220 230 240
240 250 260 270
pF1KE5 YARPTRLNVIRNDNDSWDYTKPYLGRRGRYFIHFRMYLIC
::::::::::::::::::::::::::: :
XP_011 YARPTRLNVIRNDNDSWDYTKPYLGRRDRGKGRQRQAILGEHPSSFRHDGYGSHGPLLPL
250 260 270 280 290 300
>>XP_005264696 (OMIM: 611208) PREDICTED: heterogeneous n (595 aa)
initn: 1804 init1: 1737 opt: 1737 Z-score: 1689.0 bits: 321.4 E(85289): 2.4e-87
Smith-Waterman score: 1737; 99.6% identity (99.6% similar) in 261 aa overlap (4-264:9-269)
10 20 30 40 50
pF1KE5 MLARETYEEDREYESQAKRLKTEEGEIDYSAEEGENRREATPRGGGDGGGGGRSF
::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MSSSSSSPRETYEEDREYESQAKRLKTEEGEIDYSAEEGENRREATPRGGGDGGGGGRSF
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE5 SQPEAGGSHHKVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFEN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SQPEAGGSHHKVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFEN
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE5 IDSAKECVTFAADEPVYIAGQQAFFNYSTSKRITRPGNTDDPSGGNKVLLLSIQNPLYPI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 IDSAKECVTFAADEPVYIAGQQAFFNYSTSKRITRPGNTDDPSGGNKVLLLSIQNPLYPI
130 140 150 160 170 180
180 190 200 210 220 230
pF1KE5 TVDVLYTVCNPVGKVQRIVIFKRNGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 TVDVLYTVCNPVGKVQRIVIFKRNGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIE
190 200 210 220 230 240
240 250 260 270
pF1KE5 YARPTRLNVIRNDNDSWDYTKPYLGRRGRYFIHFRMYLIC
::::::::::::::::::::::::::: :
XP_005 YARPTRLNVIRNDNDSWDYTKPYLGRRDRGKGRQRQAILGEHPSSFRHDGYGSHGPLLPL
250 260 270 280 290 300
>>NP_001524 (OMIM: 603083) heterogeneous nuclear ribonuc (589 aa)
initn: 1100 init1: 940 opt: 963 Z-score: 940.4 bits: 182.9 E(85289): 1.2e-45
Smith-Waterman score: 963; 63.4% identity (85.3% similar) in 224 aa overlap (44-263:71-294)
20 30 40 50 60
pF1KE5 ESQAKRLKTEEGEIDYSAEEGENRREATPRGGGDGGGGGRSFSQPEAGGSH----HKVSV
::: ::::: . . .:: . ::. .
NP_001 GGGGGRYYGGGSEGGRAPKRLKTDNAGDQHGGGGGGGGGAGAAGGGGGGENYDDPHKTPA
50 60 70 80 90 100
70 80 90 100 110 120
pF1KE5 SPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADE
:::::.::: ..::::::::::..:: : ::..:: :::::::::.. .: . :..:::.
NP_001 SPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPKKRQALVEFEDVLGACNAVNYAADN
110 120 130 140 150 160
130 140 150 160 170 180
pF1KE5 PVYIAGQQAFFNYSTSKRITRPGNTDDPSGGNKVLLLSIQNPLYPITVDVLYTVCNPVGK
.::::. :: :::::..:.:::..:: . :.:::..: ::.: ::.:::::.::: :
NP_001 QIYIAGHPAFVNYSTSQKISRPGDSDDSRSVNSVLLFTILNPIYSITTDVLYTICNPCGP
170 180 190 200 210 220
190 200 210 220 230 240
pF1KE5 VQRIVIFKRNGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPTRLNVIRNDN
:::::::..::.::::::.:: ::.:::.:::::::.::::::::::.::::::..::.
NP_001 VQRIVIFRKNGVQAMVEFDSVQSAQRAKASLNGADIYSGCCTLKIEYAKPTRLNVFKNDQ
230 240 250 260 270 280
250 260 270
pF1KE5 DSWDYTKPYLGRRGRYFIHFRMYLIC
:.::::.: :. .:
NP_001 DTWDYTNPNLSGQGDPGSNPNKRQRQPPLLGDHPAEYGGPHGGYHSHYHDEGYGPPPPHY
290 300 310 320 330 340
>>XP_011525188 (OMIM: 603083) PREDICTED: heterogeneous n (518 aa)
initn: 968 init1: 916 opt: 921 Z-score: 900.5 bits: 175.3 E(85289): 2e-43
Smith-Waterman score: 921; 61.0% identity (84.2% similar) in 228 aa overlap (37-263:2-223)
10 20 30 40 50 60
pF1KE5 YEEDREYESQAKRLKTEEGEIDYSAEEGENRREATP-RGGGDGGGGGRSFSQPEAGGSHH
::...: : : : .....: :
XP_011 MRRRSVPARPRGRLGERLENYDDP------H
10 20
70 80 90 100 110 120
pF1KE5 KVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTF
:. .:::::.::: ..::::::::::..:: : ::..:: :::::::::.. .: . :..
XP_011 KTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPKKRQALVEFEDVLGACNAVNY
30 40 50 60 70 80
130 140 150 160 170 180
pF1KE5 AADEPVYIAGQQAFFNYSTSKRITRPGNTDDPSGGNKVLLLSIQNPLYPITVDVLYTVCN
:::. .::::. :: :::::..:.:::..:: . :.:::..: ::.: ::.:::::.::
XP_011 AADNQIYIAGHPAFVNYSTSQKISRPGDSDDSRSVNSVLLFTILNPIYSITTDVLYTICN
90 100 110 120 130 140
190 200 210 220 230 240
pF1KE5 PVGKVQRIVIFKRNGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPTRLNVI
: : :::::::..::.::::::.:: ::.:::.:::::::.::::::::::.::::::.
XP_011 PCGPVQRIVIFRKNGVQAMVEFDSVQSAQRAKASLNGADIYSGCCTLKIEYAKPTRLNVF
150 160 170 180 190 200
250 260 270
pF1KE5 RNDNDSWDYTKPYLGRRGRYFIHFRMYLIC
.::.:.::::.: :. .:
XP_011 KNDQDTWDYTNPNLSGQGDPGSNPNKRQRQPPLLGDHPAEYGGPHGGYHSHYHDEGYGPP
210 220 230 240 250 260
>>XP_011525189 (OMIM: 603083) PREDICTED: heterogeneous n (532 aa)
initn: 965 init1: 913 opt: 913 Z-score: 892.6 bits: 173.9 E(85289): 5.6e-43
Smith-Waterman score: 913; 66.3% identity (88.9% similar) in 199 aa overlap (65-263:39-237)
40 50 60 70 80 90
pF1KE5 ENRREATPRGGGDGGGGGRSFSQPEAGGSHHKVSVSPVVHVRGLCESVVEADLVEALEKF
::. .:::::.::: ..::::::::::..:
XP_011 AEKRRRRLEQRQQPDEQRRRSGAMENYDDPHKTPASPVVHIRGLIDGVVEADLVEALQEF
10 20 30 40 50 60
100 110 120 130 140 150
pF1KE5 GTICYVMMMPFKRQALVEFENIDSAKECVTFAADEPVYIAGQQAFFNYSTSKRITRPGNT
: : ::..:: :::::::::.. .: . :..:::. .::::. :: :::::..:.:::..
XP_011 GPISYVVVMPKKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYSTSQKISRPGDS
70 80 90 100 110 120
160 170 180 190 200 210
pF1KE5 DDPSGGNKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKRNGIQAMVEFESVLCAQ
:: . :.:::..: ::.: ::.:::::.::: : :::::::..::.::::::.:: ::
XP_011 DDSRSVNSVLLFTILNPIYSITTDVLYTICNPCGPVQRIVIFRKNGVQAMVEFDSVQSAQ
130 140 150 160 170 180
220 230 240 250 260 270
pF1KE5 KAKAALNGADIYAGCCTLKIEYARPTRLNVIRNDNDSWDYTKPYLGRRGRYFIHFRMYLI
.:::.:::::::.::::::::::.::::::..::.:.::::.: :. .:
XP_011 RAKASLNGADIYSGCCTLKIEYAKPTRLNVFKNDQDTWDYTNPNLSGQGDPGSNPNKRQR
190 200 210 220 230 240
pF1KE5 C
XP_011 QPPLLGDHPAEYGGPHGGYHSHYHDEGYGPPPPHYEGRRMGPPVGGHRRGPSRYGPQYGH
250 260 270 280 290 300
>>NP_001005335 (OMIM: 603083) heterogeneous nuclear ribo (456 aa)
initn: 799 init1: 747 opt: 747 Z-score: 733.0 bits: 144.1 E(85289): 4.3e-34
Smith-Waterman score: 747; 66.5% identity (88.8% similar) in 161 aa overlap (103-263:1-161)
80 90 100 110 120 130
pF1KE5 VHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADEPVY
:: :::::::::.. .: . :..:::. .:
NP_001 MPKKRQALVEFEDVLGACNAVNYAADNQIY
10 20 30
140 150 160 170 180 190
pF1KE5 IAGQQAFFNYSTSKRITRPGNTDDPSGGNKVLLLSIQNPLYPITVDVLYTVCNPVGKVQR
:::. :: :::::..:.:::..:: . :.:::..: ::.: ::.:::::.::: : :::
NP_001 IAGHPAFVNYSTSQKISRPGDSDDSRSVNSVLLFTILNPIYSITTDVLYTICNPCGPVQR
40 50 60 70 80 90
200 210 220 230 240 250
pF1KE5 IVIFKRNGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPTRLNVIRNDNDSW
::::..::.::::::.:: ::.:::.:::::::.::::::::::.::::::..::.:.:
NP_001 IVIFRKNGVQAMVEFDSVQSAQRAKASLNGADIYSGCCTLKIEYAKPTRLNVFKNDQDTW
100 110 120 130 140 150
260 270
pF1KE5 DYTKPYLGRRGRYFIHFRMYLIC
:::.: :. .:
NP_001 DYTNPNLSGQGDPGSNPNKRQRQPPLLGDHPAEYGGPHGGYHSHYHDEGYGPPPPHYEGR
160 170 180 190 200 210
275 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 00:07:30 2016 done: Tue Nov 8 00:07:31 2016
Total Scan time: 6.910 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]