FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5362, 275 aa
  1>>>pF1KE5362 275 - 275 aa - 275 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.3457+/-0.000833; mu= 11.2823+/- 0.050
 mean_var=100.1359+/-20.500, 0's: 0 Z-trim(109.4): 26  B-trim: 30 in 1/49
 Lambda= 0.128168
 statistics sampled from 10863 (10885) to 10863 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.694), E-opt: 0.2 (0.334), width:  16
 Scan time:  2.000

The best scores are:                                      opt bits E(32554)
CCDS46261.1 HNRNPLL gene_id:92906|Hs108|chr2       ( 537) 1754 334.5   1e-91
CCDS1796.2 HNRNPLL gene_id:92906|Hs108|chr2        ( 542) 1737 331.3 8.9e-91
CCDS33015.1 HNRNPL gene_id:3191|Hs108|chr19        ( 589)  963 188.2 1.2e-47
CCDS33016.1 HNRNPL gene_id:3191|Hs108|chr19        ( 456)  747 148.2 9.9e-36


>>CCDS46261.1 HNRNPLL gene_id:92906|Hs108|chr2            (537 aa)
 initn: 1821 init1: 1754 opt: 1754  Z-score: 1760.2  bits: 334.5 E(32554): 1e-91
Smith-Waterman score: 1754; 99.6% identity (99.6% similar) in 264 aa overlap (1-264:1-264)

               10        20        30        40        50        60
pF1KE5 MLARETYEEDREYESQAKRLKTEEGEIDYSAEEGENRREATPRGGGDGGGGGRSFSQPEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 MLARETYEEDREYESQAKRLKTEEGEIDYSAEEGENRREATPRGGGDGGGGGRSFSQPEA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 GGSHHKVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 GGSHHKVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 ECVTFAADEPVYIAGQQAFFNYSTSKRITRPGNTDDPSGGNKVLLLSIQNPLYPITVDVL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 ECVTFAADEPVYIAGQQAFFNYSTSKRITRPGNTDDPSGGNKVLLLSIQNPLYPITVDVL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE5 YTVCNPVGKVQRIVIFKRNGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 YTVCNPVGKVQRIVIFKRNGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPT
              190       200       210       220       230       240

              250       260       270                              
pF1KE5 RLNVIRNDNDSWDYTKPYLGRRGRYFIHFRMYLIC                         
       :::::::::::::::::::::: :                                    
CCDS46 RLNVIRNDNDSWDYTKPYLGRRDRGKGRQRQAILGEHPSSFRHDGYGSHGPLLPLPSRYR
              250       260       270       280       290       300

>>CCDS1796.2 HNRNPLL gene_id:92906|Hs108|chr2             (542 aa)
 initn: 1804 init1: 1737 opt: 1737  Z-score: 1743.2  bits: 331.3 E(32554): 8.9e-91
Smith-Waterman score: 1737; 99.6% identity (99.6% similar) in 261 aa overlap (4-264:9-269)

                    10        20        30        40        50     
pF1KE5      MLARETYEEDREYESQAKRLKTEEGEIDYSAEEGENRREATPRGGGDGGGGGRSF
               ::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 MSSSSSSPRETYEEDREYESQAKRLKTEEGEIDYSAEEGENRREATPRGGGDGGGGGRSF
               10        20        30        40        50        60

          60        70        80        90       100       110     
pF1KE5 SQPEAGGSHHKVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFEN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 SQPEAGGSHHKVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFEN
               70        80        90       100       110       120

         120       130       140       150       160       170     
pF1KE5 IDSAKECVTFAADEPVYIAGQQAFFNYSTSKRITRPGNTDDPSGGNKVLLLSIQNPLYPI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 IDSAKECVTFAADEPVYIAGQQAFFNYSTSKRITRPGNTDDPSGGNKVLLLSIQNPLYPI
              130       140       150       160       170       180

         180       190       200       210       220       230     
pF1KE5 TVDVLYTVCNPVGKVQRIVIFKRNGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 TVDVLYTVCNPVGKVQRIVIFKRNGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIE
              190       200       210       220       230       240

         240       250       260       270                         
pF1KE5 YARPTRLNVIRNDNDSWDYTKPYLGRRGRYFIHFRMYLIC                    
       ::::::::::::::::::::::::::: :                               
CCDS17 YARPTRLNVIRNDNDSWDYTKPYLGRRDRGKGRQRQAILGEHPSSFRHDGYGSHGPLLPL
              250       260       270       280       290       300

>>CCDS33015.1 HNRNPL gene_id:3191|Hs108|chr19             (589 aa)
 initn: 1100 init1: 940 opt: 963  Z-score: 969.2  bits: 188.2 E(32554): 1.2e-47
Smith-Waterman score: 963; 63.4% identity (85.3% similar) in 224 aa overlap (44-263:71-294)

            20        30        40        50        60             
pF1KE5 ESQAKRLKTEEGEIDYSAEEGENRREATPRGGGDGGGGGRSFSQPEAGGSH----HKVSV
                                     ::: ::::: . .   .:: .    ::. .
CCDS33 GGGGGRYYGGGSEGGRAPKRLKTDNAGDQHGGGGGGGGGAGAAGGGGGGENYDDPHKTPA
               50        60        70        80        90       100

      70        80        90       100       110       120         
pF1KE5 SPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADE
       :::::.::: ..::::::::::..:: : ::..:: :::::::::.. .: . :..:::.
CCDS33 SPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPKKRQALVEFEDVLGACNAVNYAADN
              110       120       130       140       150       160

     130       140       150       160       170       180         
pF1KE5 PVYIAGQQAFFNYSTSKRITRPGNTDDPSGGNKVLLLSIQNPLYPITVDVLYTVCNPVGK
        .::::. :: :::::..:.:::..::  . :.:::..: ::.: ::.:::::.::: : 
CCDS33 QIYIAGHPAFVNYSTSQKISRPGDSDDSRSVNSVLLFTILNPIYSITTDVLYTICNPCGP
              170       180       190       200       210       220

     190       200       210       220       230       240         
pF1KE5 VQRIVIFKRNGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPTRLNVIRNDN
       :::::::..::.::::::.::  ::.:::.:::::::.::::::::::.::::::..::.
CCDS33 VQRIVIFRKNGVQAMVEFDSVQSAQRAKASLNGADIYSGCCTLKIEYAKPTRLNVFKNDQ
              230       240       250       260       270       280

     250       260       270                                       
pF1KE5 DSWDYTKPYLGRRGRYFIHFRMYLIC                                  
       :.::::.: :. .:                                              
CCDS33 DTWDYTNPNLSGQGDPGSNPNKRQRQPPLLGDHPAEYGGPHGGYHSHYHDEGYGPPPPHY
              290       300       310       320       330       340

>>CCDS33016.1 HNRNPL gene_id:3191|Hs108|chr19             (456 aa)
 initn: 799 init1: 747 opt: 747  Z-score: 754.9  bits: 148.2 E(32554): 9.9e-36
Smith-Waterman score: 747; 66.5% identity (88.8% similar) in 161 aa overlap (103-263:1-161)

             80        90       100       110       120       130  
pF1KE5 VHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADEPVY
                                     :: :::::::::.. .: . :..:::. .:
CCDS33                               MPKKRQALVEFEDVLGACNAVNYAADNQIY
                                             10        20        30

            140       150       160       170       180       190  
pF1KE5 IAGQQAFFNYSTSKRITRPGNTDDPSGGNKVLLLSIQNPLYPITVDVLYTVCNPVGKVQR
       :::. :: :::::..:.:::..::  . :.:::..: ::.: ::.:::::.::: : :::
CCDS33 IAGHPAFVNYSTSQKISRPGDSDDSRSVNSVLLFTILNPIYSITTDVLYTICNPCGPVQR
               40        50        60        70        80        90

            200       210       220       230       240       250  
pF1KE5 IVIFKRNGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPTRLNVIRNDNDSW
       ::::..::.::::::.::  ::.:::.:::::::.::::::::::.::::::..::.:.:
CCDS33 IVIFRKNGVQAMVEFDSVQSAQRAKASLNGADIYSGCCTLKIEYAKPTRLNVFKNDQDTW
              100       110       120       130       140       150

            260       270                                          
pF1KE5 DYTKPYLGRRGRYFIHFRMYLIC                                     
       :::.: :. .:                                                 
CCDS33 DYTNPNLSGQGDPGSNPNKRQRQPPLLGDHPAEYGGPHGGYHSHYHDEGYGPPPPHYEGR
              160       170       180       190       200       210




275 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 00:07:29 2016 done: Tue Nov  8 00:07:30 2016
 Total Scan time:  2.000 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]