FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5360, 260 aa
  1>>>pF1KE5360 260 - 260 aa - 260 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.8070+/-0.000625; mu= 9.2329+/- 0.038
 mean_var=107.4820+/-21.603, 0's: 0 Z-trim(115.1): 3  B-trim: 829 in 1/51
 Lambda= 0.123710
 statistics sampled from 15621 (15623) to 15621 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.805), E-opt: 0.2 (0.48), width:  16
 Scan time:  2.330

The best scores are:                                      opt bits E(32554)
CCDS33938.1 UVSSA gene_id:57654|Hs108|chr4         ( 709) 1786 328.5 7.6e-90


>>CCDS33938.1 UVSSA gene_id:57654|Hs108|chr4              (709 aa)
 initn: 1786 init1: 1786 opt: 1786  Z-score: 1726.4  bits: 328.5 E(32554): 7.6e-90
Smith-Waterman score: 1786; 100.0% identity (100.0% similar) in 260 aa overlap (1-260:450-709)

                                             10        20        30
pF1KE5                               MDEEVSDPTSAAAQLRQLRDHLPPPSSASP
                                     ::::::::::::::::::::::::::::::
CCDS33 HIPDHLRPEYGLEAAPEKDTVVRCLRTRTRMDEEVSDPTSAAAQLRQLRDHLPPPSSASP
     420       430       440       450       460       470         

               40        50        60        70        80        90
pF1KE5 SRALPEPQEAQKLAAERARAPVVPYGVDLHYWGQELPTAGKIVKSDSQHRFWKPSEVEEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 SRALPEPQEAQKLAAERARAPVVPYGVDLHYWGQELPTAGKIVKSDSQHRFWKPSEVEEE
     480       490       500       510       520       530         

              100       110       120       130       140       150
pF1KE5 VVNADISEMLRSRHITFAGKFEPVQHWCRAPRPDGRLCERQDRLKCPFHGKIVPRDDEGR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 VVNADISEMLRSRHITFAGKFEPVQHWCRAPRPDGRLCERQDRLKCPFHGKIVPRDDEGR
     540       550       560       570       580       590         

              160       170       180       190       200       210
pF1KE5 PLDPEDRAREQRRQLQKQERPEWQDPELMRDVEAATGQDLGSSRYSGKGRGKKRRYPSLT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 PLDPEDRAREQRRQLQKQERPEWQDPELMRDVEAATGQDLGSSRYSGKGRGKKRRYPSLT
     600       610       620       630       640       650         

              220       230       240       250       260
pF1KE5 NLKAQADTARARIGRKVFAKAAVRRVVAAMNRMDQKKHEKFSNQFNYALN
       ::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 NLKAQADTARARIGRKVFAKAAVRRVVAAMNRMDQKKHEKFSNQFNYALN
     660       670       680       690       700         




260 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 00:06:21 2016 done: Tue Nov  8 00:06:22 2016
 Total Scan time:  2.330 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]