Result of FASTA (omim) for
pFN21AE5356
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE5356, 309 aa
1>>>pF1KE5356 309 - 309 aa - 309 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.5286+/-0.000376; mu= 11.6055+/- 0.024
mean_var=124.8417+/-23.604, 0's: 0 Z-trim(116.7): 91 B-trim: 216 in 1/55
Lambda= 0.114787
statistics sampled from 27922 (28018) to 27922 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.691), E-opt: 0.2 (0.329), width: 16
Scan time: 6.000
The best scores are: opt bits E(85289)
NP_775111 (OMIM: 114240,253600) calpain-3 isoform ( 309) 2080 355.3 8.9e-98
NP_000061 (OMIM: 114240,253600) calpain-3 isoform ( 821) 2080 355.7 1.9e-97
NP_077320 (OMIM: 114240,253600) calpain-3 isoform ( 815) 2023 346.2 1.3e-94
NP_775110 (OMIM: 114240,253600) calpain-3 isoform ( 729) 1271 221.7 3.6e-57
NP_775113 (OMIM: 114240,253600) calpain-3 isoform ( 156) 1071 188.0 1.1e-47
NP_775112 (OMIM: 114240,253600) calpain-3 isoform ( 156) 1071 188.0 1.1e-47
XP_011525661 (OMIM: 114170) PREDICTED: calpain sma ( 200) 757 136.1 5.8e-32
NP_001740 (OMIM: 114170) calpain small subunit 1 i ( 268) 753 135.5 1.1e-31
NP_001003962 (OMIM: 114170) calpain small subunit ( 268) 753 135.5 1.1e-31
NP_001289561 (OMIM: 114170) calpain small subunit ( 268) 753 135.5 1.1e-31
NP_001185797 (OMIM: 114220,616907) calpain-1 catal ( 714) 744 134.4 6.7e-31
NP_005177 (OMIM: 114220,616907) calpain-1 catalyti ( 714) 744 134.4 6.7e-31
XP_011543594 (OMIM: 114220,616907) PREDICTED: calp ( 714) 744 134.4 6.7e-31
NP_001185798 (OMIM: 114220,616907) calpain-1 catal ( 714) 744 134.4 6.7e-31
XP_006718761 (OMIM: 114220,616907) PREDICTED: calp ( 714) 744 134.4 6.7e-31
NP_115706 (OMIM: 616767) calpain small subunit 2 [ ( 248) 709 128.2 1.7e-29
XP_005259352 (OMIM: 114170) PREDICTED: calpain sma ( 322) 700 126.8 5.7e-29
XP_005259353 (OMIM: 114170) PREDICTED: calpain sma ( 322) 700 126.8 5.7e-29
NP_001289562 (OMIM: 114170) calpain small subunit ( 156) 655 119.1 5.8e-27
XP_016855588 (OMIM: 606401) PREDICTED: calpain-9 i ( 495) 626 114.7 3.9e-25
NP_001306605 (OMIM: 606401) calpain-9 isoform 3 [H ( 627) 626 114.8 4.6e-25
NP_057536 (OMIM: 606401) calpain-9 isoform 2 [Homo ( 664) 626 114.8 4.8e-25
NP_006606 (OMIM: 606401) calpain-9 isoform 1 [Homo ( 690) 626 114.8 5e-25
NP_001139540 (OMIM: 114230) calpain-2 catalytic su ( 622) 594 109.5 1.8e-23
NP_001739 (OMIM: 114230) calpain-2 catalytic subun ( 700) 594 109.5 2e-23
XP_011542322 (OMIM: 606401) PREDICTED: calpain-9 i ( 526) 584 107.8 5e-23
NP_008989 (OMIM: 604822) calpain-11 [Homo sapiens] ( 739) 586 108.2 5.2e-23
XP_006715047 (OMIM: 604822) PREDICTED: calpain-11 ( 740) 586 108.2 5.2e-23
XP_011512577 (OMIM: 604822) PREDICTED: calpain-11 ( 743) 586 108.2 5.2e-23
XP_011512576 (OMIM: 604822) PREDICTED: calpain-11 ( 744) 586 108.2 5.2e-23
XP_011542321 (OMIM: 606401) PREDICTED: calpain-9 i ( 658) 584 107.8 5.9e-23
XP_016855587 (OMIM: 606401) PREDICTED: calpain-9 i ( 693) 584 107.9 6.2e-23
XP_011542320 (OMIM: 606401) PREDICTED: calpain-9 i ( 695) 584 107.9 6.2e-23
XP_011542319 (OMIM: 606401) PREDICTED: calpain-9 i ( 721) 584 107.9 6.4e-23
XP_006715048 (OMIM: 604822) PREDICTED: calpain-11 ( 724) 527 98.4 4.4e-20
NP_653292 (OMIM: 608839) calpain-12 [Homo sapiens] ( 719) 371 72.6 2.6e-12
NP_944490 (OMIM: 182520) sorcin isoform B [Homo sa ( 183) 362 70.6 2.7e-12
NP_003121 (OMIM: 182520) sorcin isoform A [Homo sa ( 198) 362 70.6 2.8e-12
NP_001243821 (OMIM: 182520) sorcin isoform D [Homo ( 180) 352 69.0 8.3e-12
NP_001243820 (OMIM: 182520) sorcin isoform C [Homo ( 195) 352 69.0 8.8e-12
NP_001317199 (OMIM: 607030) grancalcin isoform d [ ( 198) 349 68.5 1.3e-11
NP_001317200 (OMIM: 607030) grancalcin isoform d [ ( 198) 349 68.5 1.3e-11
NP_036330 (OMIM: 607030) grancalcin isoform b [Hom ( 217) 349 68.5 1.3e-11
NP_001317194 (OMIM: 607030) grancalcin isoform a [ ( 232) 349 68.6 1.4e-11
NP_001317196 (OMIM: 607030) grancalcin isoform a [ ( 232) 349 68.6 1.4e-11
NP_001317195 (OMIM: 607030) grancalcin isoform a [ ( 232) 349 68.6 1.4e-11
NP_001317197 (OMIM: 607030) grancalcin isoform c [ ( 243) 349 68.6 1.5e-11
XP_011509228 (OMIM: 607030) PREDICTED: grancalcin ( 214) 337 66.5 5.3e-11
XP_016859256 (OMIM: 607030) PREDICTED: grancalcin ( 214) 337 66.5 5.3e-11
XP_005246503 (OMIM: 607030) PREDICTED: grancalcin ( 233) 337 66.6 5.6e-11
>>NP_775111 (OMIM: 114240,253600) calpain-3 isoform d [H (309 aa)
initn: 2080 init1: 2080 opt: 2080 Z-score: 1876.4 bits: 355.3 E(85289): 8.9e-98
Smith-Waterman score: 2080; 100.0% identity (100.0% similar) in 309 aa overlap (1-309:1-309)
10 20 30 40 50 60
pF1KE5 MHGNKQHLQKDFFLYNASKARSKTYINMREVSQRFRLPPSEYVIVPSTYEPHQEGEFILR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_775 MHGNKQHLQKDFFLYNASKARSKTYINMREVSQRFRLPPSEYVIVPSTYEPHQEGEFILR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 VFSEKRNLSEEVENTISVDRPVKKKKTKPIIFVSDRANSNKELGVDQESEEGKGKTSPDK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_775 VFSEKRNLSEEVENTISVDRPVKKKKTKPIIFVSDRANSNKELGVDQESEEGKGKTSPDK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE5 QKQSPQPQPGSSDQESEEQQQFRNIFKQIAGDDMEICADELKKVLNTVVNKHKDLKTHGF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_775 QKQSPQPQPGSSDQESEEQQQFRNIFKQIAGDDMEICADELKKVLNTVVNKHKDLKTHGF
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE5 TLESCRSMIALMDTDGSGKLNLQEFHHLWNKIKAWQKIFKHYDTDQSGTINSYEMRNAVN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_775 TLESCRSMIALMDTDGSGKLNLQEFHHLWNKIKAWQKIFKHYDTDQSGTINSYEMRNAVN
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE5 DAGFHLNNQLYDIITMRYADKHMNIDFDSFICCFVRLEGMFRAFHAFDKDGDGIIKLNVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_775 DAGFHLNNQLYDIITMRYADKHMNIDFDSFICCFVRLEGMFRAFHAFDKDGDGIIKLNVL
250 260 270 280 290 300
pF1KE5 EWLQLTMYA
:::::::::
NP_775 EWLQLTMYA
>>NP_000061 (OMIM: 114240,253600) calpain-3 isoform a [H (821 aa)
initn: 2080 init1: 2080 opt: 2080 Z-score: 1870.7 bits: 355.7 E(85289): 1.9e-97
Smith-Waterman score: 2080; 100.0% identity (100.0% similar) in 309 aa overlap (1-309:513-821)
10 20 30
pF1KE5 MHGNKQHLQKDFFLYNASKARSKTYINMRE
::::::::::::::::::::::::::::::
NP_000 ALMQKNRRKDRKLGASLFTIGFAIYEVPKEMHGNKQHLQKDFFLYNASKARSKTYINMRE
490 500 510 520 530 540
40 50 60 70 80 90
pF1KE5 VSQRFRLPPSEYVIVPSTYEPHQEGEFILRVFSEKRNLSEEVENTISVDRPVKKKKTKPI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 VSQRFRLPPSEYVIVPSTYEPHQEGEFILRVFSEKRNLSEEVENTISVDRPVKKKKTKPI
550 560 570 580 590 600
100 110 120 130 140 150
pF1KE5 IFVSDRANSNKELGVDQESEEGKGKTSPDKQKQSPQPQPGSSDQESEEQQQFRNIFKQIA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 IFVSDRANSNKELGVDQESEEGKGKTSPDKQKQSPQPQPGSSDQESEEQQQFRNIFKQIA
610 620 630 640 650 660
160 170 180 190 200 210
pF1KE5 GDDMEICADELKKVLNTVVNKHKDLKTHGFTLESCRSMIALMDTDGSGKLNLQEFHHLWN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 GDDMEICADELKKVLNTVVNKHKDLKTHGFTLESCRSMIALMDTDGSGKLNLQEFHHLWN
670 680 690 700 710 720
220 230 240 250 260 270
pF1KE5 KIKAWQKIFKHYDTDQSGTINSYEMRNAVNDAGFHLNNQLYDIITMRYADKHMNIDFDSF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 KIKAWQKIFKHYDTDQSGTINSYEMRNAVNDAGFHLNNQLYDIITMRYADKHMNIDFDSF
730 740 750 760 770 780
280 290 300
pF1KE5 ICCFVRLEGMFRAFHAFDKDGDGIIKLNVLEWLQLTMYA
:::::::::::::::::::::::::::::::::::::::
NP_000 ICCFVRLEGMFRAFHAFDKDGDGIIKLNVLEWLQLTMYA
790 800 810 820
>>NP_077320 (OMIM: 114240,253600) calpain-3 isoform b [H (815 aa)
initn: 1517 init1: 1517 opt: 2023 Z-score: 1819.7 bits: 346.2 E(85289): 1.3e-94
Smith-Waterman score: 2023; 98.1% identity (98.1% similar) in 309 aa overlap (1-309:513-815)
10 20 30
pF1KE5 MHGNKQHLQKDFFLYNASKARSKTYINMRE
::::::::::::::::::::::::::::::
NP_077 ALMQKNRRKDRKLGASLFTIGFAIYEVPKEMHGNKQHLQKDFFLYNASKARSKTYINMRE
490 500 510 520 530 540
40 50 60 70 80 90
pF1KE5 VSQRFRLPPSEYVIVPSTYEPHQEGEFILRVFSEKRNLSEEVENTISVDRPVKKKKTKPI
:::::::::::::::::::::::::::::::::::::::::::::::::::: ::
NP_077 VSQRFRLPPSEYVIVPSTYEPHQEGEFILRVFSEKRNLSEEVENTISVDRPV------PI
550 560 570 580 590
100 110 120 130 140 150
pF1KE5 IFVSDRANSNKELGVDQESEEGKGKTSPDKQKQSPQPQPGSSDQESEEQQQFRNIFKQIA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_077 IFVSDRANSNKELGVDQESEEGKGKTSPDKQKQSPQPQPGSSDQESEEQQQFRNIFKQIA
600 610 620 630 640 650
160 170 180 190 200 210
pF1KE5 GDDMEICADELKKVLNTVVNKHKDLKTHGFTLESCRSMIALMDTDGSGKLNLQEFHHLWN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_077 GDDMEICADELKKVLNTVVNKHKDLKTHGFTLESCRSMIALMDTDGSGKLNLQEFHHLWN
660 670 680 690 700 710
220 230 240 250 260 270
pF1KE5 KIKAWQKIFKHYDTDQSGTINSYEMRNAVNDAGFHLNNQLYDIITMRYADKHMNIDFDSF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_077 KIKAWQKIFKHYDTDQSGTINSYEMRNAVNDAGFHLNNQLYDIITMRYADKHMNIDFDSF
720 730 740 750 760 770
280 290 300
pF1KE5 ICCFVRLEGMFRAFHAFDKDGDGIIKLNVLEWLQLTMYA
:::::::::::::::::::::::::::::::::::::::
NP_077 ICCFVRLEGMFRAFHAFDKDGDGIIKLNVLEWLQLTMYA
780 790 800 810
>>NP_775110 (OMIM: 114240,253600) calpain-3 isoform c [H (729 aa)
initn: 1264 init1: 1264 opt: 1271 Z-score: 1147.3 bits: 221.7 E(85289): 3.6e-57
Smith-Waterman score: 1698; 85.8% identity (85.8% similar) in 309 aa overlap (1-309:465-729)
10 20 30
pF1KE5 MHGNKQHLQKDFFLYNASKARSKTYINMRE
::::::::::::::::::::::::::::::
NP_775 ALMQKNRRKDRKLGASLFTIGFAIYEVPKEMHGNKQHLQKDFFLYNASKARSKTYINMRE
440 450 460 470 480 490
40 50 60 70 80 90
pF1KE5 VSQRFRLPPSEYVIVPSTYEPHQEGEFILRVFSEKRNLSEEVENTISVDRPVKKKKTKPI
::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_775 VSQRFRLPPSEYVIVPSTYEPHQEGEFILRVFSEKRNLSEEVENTISVDRPV--------
500 510 520 530 540
100 110 120 130 140 150
pF1KE5 IFVSDRANSNKELGVDQESEEGKGKTSPDKQKQSPQPQPGSSDQESEEQQQFRNIFKQIA
::::::::::::::::::::::::
NP_775 ------------------------------------PQPGSSDQESEEQQQFRNIFKQIA
550 560 570
160 170 180 190 200 210
pF1KE5 GDDMEICADELKKVLNTVVNKHKDLKTHGFTLESCRSMIALMDTDGSGKLNLQEFHHLWN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_775 GDDMEICADELKKVLNTVVNKHKDLKTHGFTLESCRSMIALMDTDGSGKLNLQEFHHLWN
580 590 600 610 620 630
220 230 240 250 260 270
pF1KE5 KIKAWQKIFKHYDTDQSGTINSYEMRNAVNDAGFHLNNQLYDIITMRYADKHMNIDFDSF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_775 KIKAWQKIFKHYDTDQSGTINSYEMRNAVNDAGFHLNNQLYDIITMRYADKHMNIDFDSF
640 650 660 670 680 690
280 290 300
pF1KE5 ICCFVRLEGMFRAFHAFDKDGDGIIKLNVLEWLQLTMYA
:::::::::::::::::::::::::::::::::::::::
NP_775 ICCFVRLEGMFRAFHAFDKDGDGIIKLNVLEWLQLTMYA
700 710 720
>>NP_775113 (OMIM: 114240,253600) calpain-3 isoform e [H (156 aa)
initn: 1071 init1: 1071 opt: 1071 Z-score: 977.3 bits: 188.0 E(85289): 1.1e-47
Smith-Waterman score: 1071; 100.0% identity (100.0% similar) in 156 aa overlap (154-309:1-156)
130 140 150 160 170 180
pF1KE5 SPQPQPGSSDQESEEQQQFRNIFKQIAGDDMEICADELKKVLNTVVNKHKDLKTHGFTLE
::::::::::::::::::::::::::::::
NP_775 MEICADELKKVLNTVVNKHKDLKTHGFTLE
10 20 30
190 200 210 220 230 240
pF1KE5 SCRSMIALMDTDGSGKLNLQEFHHLWNKIKAWQKIFKHYDTDQSGTINSYEMRNAVNDAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_775 SCRSMIALMDTDGSGKLNLQEFHHLWNKIKAWQKIFKHYDTDQSGTINSYEMRNAVNDAG
40 50 60 70 80 90
250 260 270 280 290 300
pF1KE5 FHLNNQLYDIITMRYADKHMNIDFDSFICCFVRLEGMFRAFHAFDKDGDGIIKLNVLEWL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_775 FHLNNQLYDIITMRYADKHMNIDFDSFICCFVRLEGMFRAFHAFDKDGDGIIKLNVLEWL
100 110 120 130 140 150
pF1KE5 QLTMYA
::::::
NP_775 QLTMYA
>>NP_775112 (OMIM: 114240,253600) calpain-3 isoform e [H (156 aa)
initn: 1071 init1: 1071 opt: 1071 Z-score: 977.3 bits: 188.0 E(85289): 1.1e-47
Smith-Waterman score: 1071; 100.0% identity (100.0% similar) in 156 aa overlap (154-309:1-156)
130 140 150 160 170 180
pF1KE5 SPQPQPGSSDQESEEQQQFRNIFKQIAGDDMEICADELKKVLNTVVNKHKDLKTHGFTLE
::::::::::::::::::::::::::::::
NP_775 MEICADELKKVLNTVVNKHKDLKTHGFTLE
10 20 30
190 200 210 220 230 240
pF1KE5 SCRSMIALMDTDGSGKLNLQEFHHLWNKIKAWQKIFKHYDTDQSGTINSYEMRNAVNDAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_775 SCRSMIALMDTDGSGKLNLQEFHHLWNKIKAWQKIFKHYDTDQSGTINSYEMRNAVNDAG
40 50 60 70 80 90
250 260 270 280 290 300
pF1KE5 FHLNNQLYDIITMRYADKHMNIDFDSFICCFVRLEGMFRAFHAFDKDGDGIIKLNVLEWL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_775 FHLNNQLYDIITMRYADKHMNIDFDSFICCFVRLEGMFRAFHAFDKDGDGIIKLNVLEWL
100 110 120 130 140 150
pF1KE5 QLTMYA
::::::
NP_775 QLTMYA
>>XP_011525661 (OMIM: 114170) PREDICTED: calpain small s (200 aa)
initn: 818 init1: 744 opt: 757 Z-score: 694.8 bits: 136.1 E(85289): 5.8e-32
Smith-Waterman score: 757; 53.8% identity (81.4% similar) in 199 aa overlap (114-309:2-200)
90 100 110 120 130 140
pF1KE5 KKKTKPIIFVSDRANSNKELGVDQESEEGKGKTSPDKQKQSPQPQPGSSD---QESEEQQ
:... . . . : :. :. .:::: .
XP_011 MGEAAAQYNPEPPPPRTHYSNIEANESEEVR
10 20 30
150 160 170 180 190 200
pF1KE5 QFRNIFKQIAGDDMEICADELKKVLNTVVNKHKDLKTHGFTLESCRSMIALMDTDGSGKL
::: .: :.::::::. : :: ..:: ::..: :::: :: ...::::.:.::.: .:::
XP_011 QFRRLFAQLAGDDMEVSATELMNILNKVVTRHPDLKTDGFGIDTCRSMVAVMDSDTTGKL
40 50 60 70 80 90
210 220 230 240 250 260
pF1KE5 NLQEFHHLWNKIKAWQKIFKHYDTDQSGTINSYEMRNAVNDAGFHLNNQLYDIITMRYAD
...::..:::.:: :: :.:..:::.:::: : :. .: . ::::::..::..: ::.:
XP_011 GFEEFKYLWNNIKRWQAIYKQFDTDRSGTICSSELPGAFEAAGFHLNEHLYNMIIRRYSD
100 110 120 130 140 150
270 280 290 300
pF1KE5 KHMNIDFDSFICCFVRLEGMFRAFHAFDKDGDGIIKLNVLEWLQLTMYA
. :.:::.:: :.:::..:::::...:::: : :..:. ::::::::.
XP_011 ESGNMDFDNFISCLVRLDAMFRAFKSLDKDGTGQIQVNIQEWLQLTMYS
160 170 180 190 200
>>NP_001740 (OMIM: 114170) calpain small subunit 1 isofo (268 aa)
initn: 818 init1: 744 opt: 753 Z-score: 689.6 bits: 135.5 E(85289): 1.1e-31
Smith-Waterman score: 753; 54.6% identity (80.9% similar) in 194 aa overlap (122-309:75-268)
100 110 120 130 140
pF1KE5 FVSDRANSNKELGVDQESEEGKGKTSPDKQKQSPQPQPGSSD------QESEEQQQFRNI
. .:.: : . .:::: .::: .
NP_001 GGGGGGGGGGGGTAMRILGGVISAISEAAAQYNPEPPPPRTHYSNIEANESEEVRQFRRL
50 60 70 80 90 100
150 160 170 180 190 200
pF1KE5 FKQIAGDDMEICADELKKVLNTVVNKHKDLKTHGFTLESCRSMIALMDTDGSGKLNLQEF
: :.::::::. : :: ..:: ::..: :::: :: ...::::.:.::.: .:::...::
NP_001 FAQLAGDDMEVSATELMNILNKVVTRHPDLKTDGFGIDTCRSMVAVMDSDTTGKLGFEEF
110 120 130 140 150 160
210 220 230 240 250 260
pF1KE5 HHLWNKIKAWQKIFKHYDTDQSGTINSYEMRNAVNDAGFHLNNQLYDIITMRYADKHMNI
..:::.:: :: :.:..:::.:::: : :. .: . ::::::..::..: ::.:. :.
NP_001 KYLWNNIKRWQAIYKQFDTDRSGTICSSELPGAFEAAGFHLNEHLYNMIIRRYSDESGNM
170 180 190 200 210 220
270 280 290 300
pF1KE5 DFDSFICCFVRLEGMFRAFHAFDKDGDGIIKLNVLEWLQLTMYA
:::.:: :.:::..:::::...:::: : :..:. ::::::::.
NP_001 DFDNFISCLVRLDAMFRAFKSLDKDGTGQIQVNIQEWLQLTMYS
230 240 250 260
>>NP_001003962 (OMIM: 114170) calpain small subunit 1 is (268 aa)
initn: 818 init1: 744 opt: 753 Z-score: 689.6 bits: 135.5 E(85289): 1.1e-31
Smith-Waterman score: 753; 54.6% identity (80.9% similar) in 194 aa overlap (122-309:75-268)
100 110 120 130 140
pF1KE5 FVSDRANSNKELGVDQESEEGKGKTSPDKQKQSPQPQPGSSD------QESEEQQQFRNI
. .:.: : . .:::: .::: .
NP_001 GGGGGGGGGGGGTAMRILGGVISAISEAAAQYNPEPPPPRTHYSNIEANESEEVRQFRRL
50 60 70 80 90 100
150 160 170 180 190 200
pF1KE5 FKQIAGDDMEICADELKKVLNTVVNKHKDLKTHGFTLESCRSMIALMDTDGSGKLNLQEF
: :.::::::. : :: ..:: ::..: :::: :: ...::::.:.::.: .:::...::
NP_001 FAQLAGDDMEVSATELMNILNKVVTRHPDLKTDGFGIDTCRSMVAVMDSDTTGKLGFEEF
110 120 130 140 150 160
210 220 230 240 250 260
pF1KE5 HHLWNKIKAWQKIFKHYDTDQSGTINSYEMRNAVNDAGFHLNNQLYDIITMRYADKHMNI
..:::.:: :: :.:..:::.:::: : :. .: . ::::::..::..: ::.:. :.
NP_001 KYLWNNIKRWQAIYKQFDTDRSGTICSSELPGAFEAAGFHLNEHLYNMIIRRYSDESGNM
170 180 190 200 210 220
270 280 290 300
pF1KE5 DFDSFICCFVRLEGMFRAFHAFDKDGDGIIKLNVLEWLQLTMYA
:::.:: :.:::..:::::...:::: : :..:. ::::::::.
NP_001 DFDNFISCLVRLDAMFRAFKSLDKDGTGQIQVNIQEWLQLTMYS
230 240 250 260
>>NP_001289561 (OMIM: 114170) calpain small subunit 1 is (268 aa)
initn: 818 init1: 744 opt: 753 Z-score: 689.6 bits: 135.5 E(85289): 1.1e-31
Smith-Waterman score: 753; 54.6% identity (80.9% similar) in 194 aa overlap (122-309:75-268)
100 110 120 130 140
pF1KE5 FVSDRANSNKELGVDQESEEGKGKTSPDKQKQSPQPQPGSSD------QESEEQQQFRNI
. .:.: : . .:::: .::: .
NP_001 GGGGGGGGGGGGTAMRILGGVISAISEAAAQYNPEPPPPRTHYSNIEANESEEVRQFRRL
50 60 70 80 90 100
150 160 170 180 190 200
pF1KE5 FKQIAGDDMEICADELKKVLNTVVNKHKDLKTHGFTLESCRSMIALMDTDGSGKLNLQEF
: :.::::::. : :: ..:: ::..: :::: :: ...::::.:.::.: .:::...::
NP_001 FAQLAGDDMEVSATELMNILNKVVTRHPDLKTDGFGIDTCRSMVAVMDSDTTGKLGFEEF
110 120 130 140 150 160
210 220 230 240 250 260
pF1KE5 HHLWNKIKAWQKIFKHYDTDQSGTINSYEMRNAVNDAGFHLNNQLYDIITMRYADKHMNI
..:::.:: :: :.:..:::.:::: : :. .: . ::::::..::..: ::.:. :.
NP_001 KYLWNNIKRWQAIYKQFDTDRSGTICSSELPGAFEAAGFHLNEHLYNMIIRRYSDESGNM
170 180 190 200 210 220
270 280 290 300
pF1KE5 DFDSFICCFVRLEGMFRAFHAFDKDGDGIIKLNVLEWLQLTMYA
:::.:: :.:::..:::::...:::: : :..:. ::::::::.
NP_001 DFDNFISCLVRLDAMFRAFKSLDKDGTGQIQVNIQEWLQLTMYS
230 240 250 260
309 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 00:04:31 2016 done: Tue Nov 8 00:04:32 2016
Total Scan time: 6.000 Total Display time: 0.030
Function used was FASTA [36.3.4 Apr, 2011]