Result of FASTA (ccds) for
pFN21AE5355
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE5355, 294 aa
1>>>pF1KE5355 294 - 294 aa - 294 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.4360+/-0.00102; mu= 13.7339+/- 0.061
mean_var=55.6214+/-10.798, 0's: 0 Z-trim(102.7): 14 B-trim: 169 in 1/48
Lambda= 0.171970
statistics sampled from 7084 (7090) to 7084 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.599), E-opt: 0.2 (0.218), width: 16
Scan time: 1.590
The best scores are: opt bits E(32554)
CCDS7348.1 VDAC2 gene_id:7417|Hs108|chr10 ( 294) 1966 496.1 1.3e-140
CCDS53544.1 VDAC2 gene_id:7417|Hs108|chr10 ( 309) 1884 475.8 1.8e-134
CCDS4168.1 VDAC1 gene_id:7416|Hs108|chr5 ( 283) 1484 376.5 1.2e-104
CCDS6131.1 VDAC3 gene_id:7419|Hs108|chr8 ( 283) 1448 367.6 5.9e-102
CCDS47850.1 VDAC3 gene_id:7419|Hs108|chr8 ( 284) 1436 364.6 4.7e-101
>>CCDS7348.1 VDAC2 gene_id:7417|Hs108|chr10 (294 aa)
initn: 1966 init1: 1966 opt: 1966 Z-score: 2638.1 bits: 496.1 E(32554): 1.3e-140
Smith-Waterman score: 1966; 100.0% identity (100.0% similar) in 294 aa overlap (1-294:1-294)
10 20 30 40 50 60
pF1KE5 MATHGQTCARPMCIPPSYADLGKAARDIFNKGFGFGLVKLDVKTKSCSGVEFSTSGSSNT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 MATHGQTCARPMCIPPSYADLGKAARDIFNKGFGFGLVKLDVKTKSCSGVEFSTSGSSNT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 DTGKVTGTLETKYKWCEYGLTFTEKWNTDNTLGTEIAIEDQICQGLKLTFDTTFSPNTGK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 DTGKVTGTLETKYKWCEYGLTFTEKWNTDNTLGTEIAIEDQICQGLKLTFDTTFSPNTGK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE5 KSGKIKSSYKRECINLGCDVDFDFAGPAIHGSAVFGYEGWLAGYQMTFDSAKSKLTRNNF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 KSGKIKSSYKRECINLGCDVDFDFAGPAIHGSAVFGYEGWLAGYQMTFDSAKSKLTRNNF
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE5 AVGYRTGDFQLHTNVNDGTEFGGSIYQKVCEDLDTSVNLAWTSGTNCTRFGIAAKYQLDP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 AVGYRTGDFQLHTNVNDGTEFGGSIYQKVCEDLDTSVNLAWTSGTNCTRFGIAAKYQLDP
190 200 210 220 230 240
250 260 270 280 290
pF1KE5 TASISAKVNNSSLIGVGYTQTLRPGVKLTLSALVDGKSINAGGHKVGLALELEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 TASISAKVNNSSLIGVGYTQTLRPGVKLTLSALVDGKSINAGGHKVGLALELEA
250 260 270 280 290
>>CCDS53544.1 VDAC2 gene_id:7417|Hs108|chr10 (309 aa)
initn: 1884 init1: 1884 opt: 1884 Z-score: 2527.8 bits: 475.8 E(32554): 1.8e-134
Smith-Waterman score: 1884; 100.0% identity (100.0% similar) in 283 aa overlap (12-294:27-309)
10 20 30 40
pF1KE5 MATHGQTCARPMCIPPSYADLGKAARDIFNKGFGFGLVKLDVKTK
::::::::::::::::::::::::::::::::::
CCDS53 MSWCNELRLPALKQHSIGRGLESHITMCIPPSYADLGKAARDIFNKGFGFGLVKLDVKTK
10 20 30 40 50 60
50 60 70 80 90 100
pF1KE5 SCSGVEFSTSGSSNTDTGKVTGTLETKYKWCEYGLTFTEKWNTDNTLGTEIAIEDQICQG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 SCSGVEFSTSGSSNTDTGKVTGTLETKYKWCEYGLTFTEKWNTDNTLGTEIAIEDQICQG
70 80 90 100 110 120
110 120 130 140 150 160
pF1KE5 LKLTFDTTFSPNTGKKSGKIKSSYKRECINLGCDVDFDFAGPAIHGSAVFGYEGWLAGYQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 LKLTFDTTFSPNTGKKSGKIKSSYKRECINLGCDVDFDFAGPAIHGSAVFGYEGWLAGYQ
130 140 150 160 170 180
170 180 190 200 210 220
pF1KE5 MTFDSAKSKLTRNNFAVGYRTGDFQLHTNVNDGTEFGGSIYQKVCEDLDTSVNLAWTSGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 MTFDSAKSKLTRNNFAVGYRTGDFQLHTNVNDGTEFGGSIYQKVCEDLDTSVNLAWTSGT
190 200 210 220 230 240
230 240 250 260 270 280
pF1KE5 NCTRFGIAAKYQLDPTASISAKVNNSSLIGVGYTQTLRPGVKLTLSALVDGKSINAGGHK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 NCTRFGIAAKYQLDPTASISAKVNNSSLIGVGYTQTLRPGVKLTLSALVDGKSINAGGHK
250 260 270 280 290 300
290
pF1KE5 VGLALELEA
:::::::::
CCDS53 VGLALELEA
>>CCDS4168.1 VDAC1 gene_id:7416|Hs108|chr5 (283 aa)
initn: 1510 init1: 1474 opt: 1484 Z-score: 1992.1 bits: 376.5 E(32554): 1.2e-104
Smith-Waterman score: 1484; 74.6% identity (95.4% similar) in 283 aa overlap (12-294:1-283)
10 20 30 40 50 60
pF1KE5 MATHGQTCARPMCIPPSYADLGKAARDIFNKGFGFGLVKLDVKTKSCSGVEFSTSGSSNT
: .::.::::::.:::.:.::.::::.:::.:::: .:.::..:::.::
CCDS41 MAVPPTYADLGKSARDVFTKGYGFGLIKLDLKTKSENGLEFTSSGSANT
10 20 30 40
70 80 90 100 110 120
pF1KE5 DTGKVTGTLETKYKWCEYGLTFTEKWNTDNTLGTEIAIEDQICQGLKLTFDTTFSPNTGK
.: ::::.:::::.: ::::::::::::::::::::..:::. .:::::::..:::::::
CCDS41 ETTKVTGSLETKYRWTEYGLTFTEKWNTDNTLGTEITVEDQLARGLKLTFDSSFSPNTGK
50 60 70 80 90 100
130 140 150 160 170 180
pF1KE5 KSGKIKSSYKRECINLGCDVDFDFAGPAIHGSAVFGYEGWLAGYQMTFDSAKSKLTRNNF
:..:::..:::: ::::::.:::.:::.:.:. :.:::::::::::.:..:::..:..::
CCDS41 KNAKIKTGYKREHINLGCDMDFDIAGPSIRGALVLGYEGWLAGYQMNFETAKSRVTQSNF
110 120 130 140 150 160
190 200 210 220 230 240
pF1KE5 AVGYRTGDFQLHTNVNDGTEFGGSIYQKVCEDLDTSVNLAWTSGTNCTRFGIAAKYQLDP
::::.: .::::::::::::::::::::: . :.:.::::::.:.. ::::::::::.::
CCDS41 AVGYKTDEFQLHTNVNDGTEFGGSIYQKVNKKLETAVNLAWTAGNSNTRFGIAAKYQIDP
170 180 190 200 210 220
250 260 270 280 290
pF1KE5 TASISAKVNNSSLIGVGYTQTLRPGVKLTLSALVDGKSINAGGHKVGLALELEA
: .:::::::::::.::::::.::.:::::::.:::..::::::.::.::..:
CCDS41 DACFSAKVNNSSLIGLGYTQTLKPGIKLTLSALLDGKNVNAGGHKLGLGLEFQA
230 240 250 260 270 280
>>CCDS6131.1 VDAC3 gene_id:7419|Hs108|chr8 (283 aa)
initn: 1448 init1: 1448 opt: 1448 Z-score: 1943.9 bits: 367.6 E(32554): 5.9e-102
Smith-Waterman score: 1448; 73.5% identity (94.0% similar) in 283 aa overlap (12-294:1-283)
10 20 30 40 50 60
pF1KE5 MATHGQTCARPMCIPPSYADLGKAARDIFNKGFGFGLVKLDVKTKSCSGVEFSTSGSSNT
:: :.: ::::::.:.::::.:::.::.:.:::::::::::::: . :
CCDS61 MCNTPTYCDLGKAAKDVFNKGYGFGMVKIDLKTKSCSGVEFSTSGHAYT
10 20 30 40
70 80 90 100 110 120
pF1KE5 DTGKVTGTLETKYKWCEYGLTFTEKWNTDNTLGTEIAIEDQICQGLKLTFDTTFSPNTGK
::::..:.:::::: :.::::::.::::::::::::. :... .:::::.:: : :::::
CCDS61 DTGKASGNLETKYKVCNYGLTFTQKWNTDNTLGTEISWENKLAEGLKLTLDTIFVPNTGK
50 60 70 80 90 100
130 140 150 160 170 180
pF1KE5 KSGKIKSSYKRECINLGCDVDFDFAGPAIHGSAVFGYEGWLAGYQMTFDSAKSKLTRNNF
::::.:.::::.:...: .::.::.::.:.: ::...:::::::::.::.:::::..:::
CCDS61 KSGKLKASYKRDCFSVGSNVDIDFSGPTIYGWAVLAFEGWLAGYQMSFDTAKSKLSQNNF
110 120 130 140 150 160
190 200 210 220 230 240
pF1KE5 AVGYRTGDFQLHTNVNDGTEFGGSIYQKVCEDLDTSVNLAWTSGTNCTRFGIAAKYQLDP
:.::...::::::.::::::::::::::: : ..::.:::::.:.: :::::::::.::
CCDS61 ALGYKAADFQLHTHVNDGTEFGGSIYQKVNEKIETSINLAWTAGSNNTRFGIAAKYMLDC
170 180 190 200 210 220
250 260 270 280 290
pF1KE5 TASISAKVNNSSLIGVGYTQTLRPGVKLTLSALVDGKSINAGGHKVGLALELEA
.:.::::::.::::.:::::::::::::::::.:::...::::::::..::::
CCDS61 RTSLSAKVNNASLIGLGYTQTLRPGVKLTLSALIDGKNFSAGGHKVGLGFELEA
230 240 250 260 270 280
>>CCDS47850.1 VDAC3 gene_id:7419|Hs108|chr8 (284 aa)
initn: 1227 init1: 1227 opt: 1436 Z-score: 1927.8 bits: 364.6 E(32554): 4.7e-101
Smith-Waterman score: 1436; 73.2% identity (93.7% similar) in 284 aa overlap (12-294:1-284)
10 20 30 40 50
pF1KE5 MATHGQTCARPMCIPPSYADLGKAARDIFNKGFGFGLVKLDVKTKSCSGV-EFSTSGSSN
:: :.: ::::::.:.::::.:::.::.:.:::::::: :::::: .
CCDS47 MCNTPTYCDLGKAAKDVFNKGYGFGMVKIDLKTKSCSGVMEFSTSGHAY
10 20 30 40
60 70 80 90 100 110
pF1KE5 TDTGKVTGTLETKYKWCEYGLTFTEKWNTDNTLGTEIAIEDQICQGLKLTFDTTFSPNTG
:::::..:.:::::: :.::::::.::::::::::::. :... .:::::.:: : ::::
CCDS47 TDTGKASGNLETKYKVCNYGLTFTQKWNTDNTLGTEISWENKLAEGLKLTLDTIFVPNTG
50 60 70 80 90 100
120 130 140 150 160 170
pF1KE5 KKSGKIKSSYKRECINLGCDVDFDFAGPAIHGSAVFGYEGWLAGYQMTFDSAKSKLTRNN
:::::.:.::::.:...: .::.::.::.:.: ::...:::::::::.::.:::::..::
CCDS47 KKSGKLKASYKRDCFSVGSNVDIDFSGPTIYGWAVLAFEGWLAGYQMSFDTAKSKLSQNN
110 120 130 140 150 160
180 190 200 210 220 230
pF1KE5 FAVGYRTGDFQLHTNVNDGTEFGGSIYQKVCEDLDTSVNLAWTSGTNCTRFGIAAKYQLD
::.::...::::::.::::::::::::::: : ..::.:::::.:.: :::::::::.::
CCDS47 FALGYKAADFQLHTHVNDGTEFGGSIYQKVNEKIETSINLAWTAGSNNTRFGIAAKYMLD
170 180 190 200 210 220
240 250 260 270 280 290
pF1KE5 PTASISAKVNNSSLIGVGYTQTLRPGVKLTLSALVDGKSINAGGHKVGLALELEA
.:.::::::.::::.:::::::::::::::::.:::...::::::::..::::
CCDS47 CRTSLSAKVNNASLIGLGYTQTLRPGVKLTLSALIDGKNFSAGGHKVGLGFELEA
230 240 250 260 270 280
294 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 00:03:52 2016 done: Tue Nov 8 00:03:53 2016
Total Scan time: 1.590 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]