Result of FASTA (omim) for
pFN21AE5349
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE5349, 297 aa
1>>>pF1KE5349 297 - 297 aa - 297 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.6309+/-0.00039; mu= 13.5262+/- 0.024
mean_var=65.6899+/-13.072, 0's: 0 Z-trim(112.0): 22 B-trim: 53 in 2/51
Lambda= 0.158243
statistics sampled from 20699 (20717) to 20699 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.616), E-opt: 0.2 (0.243), width: 16
Scan time: 7.030
The best scores are: opt bits E(85289)
NP_001172010 (OMIM: 300623,300624,309550,311360) s ( 516) 1957 455.8 8.3e-128
NP_001172004 (OMIM: 300623,300624,309550,311360) s ( 537) 1957 455.8 8.6e-128
NP_001172011 (OMIM: 300623,300624,309550,311360) s ( 586) 1957 455.8 9.3e-128
NP_001172005 (OMIM: 300623,300624,309550,311360) s ( 611) 1957 455.8 9.7e-128
NP_002015 (OMIM: 300623,300624,309550,311360) syna ( 632) 1957 455.8 9.9e-128
NP_001013456 (OMIM: 600819) fragile X mental retar ( 539) 1478 346.4 7.2e-95
XP_005247873 (OMIM: 600819) PREDICTED: fragile X m ( 568) 1478 346.4 7.5e-95
NP_005078 (OMIM: 600819) fragile X mental retardat ( 621) 1478 346.4 8.1e-95
XP_005247872 (OMIM: 600819) PREDICTED: fragile X m ( 648) 1478 346.4 8.4e-95
XP_005247871 (OMIM: 600819) PREDICTED: fragile X m ( 650) 1478 346.4 8.5e-95
XP_005247870 (OMIM: 600819) PREDICTED: fragile X m ( 677) 1478 346.4 8.8e-95
NP_004851 (OMIM: 605339) fragile X mental retardat ( 673) 1411 331.2 3.5e-90
XP_016862790 (OMIM: 600819) PREDICTED: fragile X m ( 454) 1002 237.7 3.2e-62
XP_016862789 (OMIM: 600819) PREDICTED: fragile X m ( 483) 1002 237.7 3.4e-62
NP_001013457 (OMIM: 600819) fragile X mental retar ( 536) 1002 237.7 3.7e-62
XP_016862788 (OMIM: 600819) PREDICTED: fragile X m ( 563) 1002 237.7 3.8e-62
XP_016862787 (OMIM: 600819) PREDICTED: fragile X m ( 565) 1002 237.7 3.9e-62
XP_006713838 (OMIM: 600819) PREDICTED: fragile X m ( 592) 1002 237.8 4e-62
>>NP_001172010 (OMIM: 300623,300624,309550,311360) synap (516 aa)
initn: 1957 init1: 1957 opt: 1957 Z-score: 2415.5 bits: 455.8 E(85289): 8.3e-128
Smith-Waterman score: 1957; 100.0% identity (100.0% similar) in 294 aa overlap (1-294:1-294)
10 20 30 40 50 60
pF1KE5 MEELVVEVRGSNGAFYKAFVKDVHEDSITVAFENNWQPDRQIPFHDVRFPPPVGYNKDIN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MEELVVEVRGSNGAFYKAFVKDVHEDSITVAFENNWQPDRQIPFHDVRFPPPVGYNKDIN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 ESDEVEVYSRANEKEPCCWWLAKVRMIKGEFYVIEYAACDATYNEIVTIERLRSVNPNKP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ESDEVEVYSRANEKEPCCWWLAKVRMIKGEFYVIEYAACDATYNEIVTIERLRSVNPNKP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE5 ATKDTFHKIKLDVPEDLRQMCAKEAAHKDFKKAVGAFSVTYDPENYQLVILSINEVTSKR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ATKDTFHKIKLDVPEDLRQMCAKEAAHKDFKKAVGAFSVTYDPENYQLVILSINEVTSKR
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE5 AHMLIDMHFRSLRTKLSLIMRNEEASKQLESSRQLASRFHEQFIVREDLMGLAIGTHGAN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AHMLIDMHFRSLRTKLSLIMRNEEASKQLESSRQLASRFHEQFIVREDLMGLAIGTHGAN
190 200 210 220 230 240
250 260 270 280 290
pF1KE5 IQQARKVPGVTAIDLDEDTCTFHIYGEDQDAVKKARSFLEFAEDVIQVPRNLVGLKI
::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IQQARKVPGVTAIDLDEDTCTFHIYGEDQDAVKKARSFLEFAEDVIQVPRNLVGKVIGKN
250 260 270 280 290 300
NP_001 GKLIQEIVDKSGVVRVRIEAENEKNVPQEEEIMPPNSLPSNNSRVGPNAPEEKKHLDIKE
310 320 330 340 350 360
>>NP_001172004 (OMIM: 300623,300624,309550,311360) synap (537 aa)
initn: 1957 init1: 1957 opt: 1957 Z-score: 2415.3 bits: 455.8 E(85289): 8.6e-128
Smith-Waterman score: 1957; 100.0% identity (100.0% similar) in 294 aa overlap (1-294:1-294)
10 20 30 40 50 60
pF1KE5 MEELVVEVRGSNGAFYKAFVKDVHEDSITVAFENNWQPDRQIPFHDVRFPPPVGYNKDIN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MEELVVEVRGSNGAFYKAFVKDVHEDSITVAFENNWQPDRQIPFHDVRFPPPVGYNKDIN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 ESDEVEVYSRANEKEPCCWWLAKVRMIKGEFYVIEYAACDATYNEIVTIERLRSVNPNKP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ESDEVEVYSRANEKEPCCWWLAKVRMIKGEFYVIEYAACDATYNEIVTIERLRSVNPNKP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE5 ATKDTFHKIKLDVPEDLRQMCAKEAAHKDFKKAVGAFSVTYDPENYQLVILSINEVTSKR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ATKDTFHKIKLDVPEDLRQMCAKEAAHKDFKKAVGAFSVTYDPENYQLVILSINEVTSKR
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE5 AHMLIDMHFRSLRTKLSLIMRNEEASKQLESSRQLASRFHEQFIVREDLMGLAIGTHGAN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AHMLIDMHFRSLRTKLSLIMRNEEASKQLESSRQLASRFHEQFIVREDLMGLAIGTHGAN
190 200 210 220 230 240
250 260 270 280 290
pF1KE5 IQQARKVPGVTAIDLDEDTCTFHIYGEDQDAVKKARSFLEFAEDVIQVPRNLVGLKI
::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IQQARKVPGVTAIDLDEDTCTFHIYGEDQDAVKKARSFLEFAEDVIQVPRNLVGKVIGKN
250 260 270 280 290 300
NP_001 GKLIQEIVDKSGVVRVRIEAENEKNVPQEEEIMPPNSLPSNNSRVGPNAPEEKKHLDIKE
310 320 330 340 350 360
>>NP_001172011 (OMIM: 300623,300624,309550,311360) synap (586 aa)
initn: 1957 init1: 1957 opt: 1957 Z-score: 2414.6 bits: 455.8 E(85289): 9.3e-128
Smith-Waterman score: 1957; 100.0% identity (100.0% similar) in 294 aa overlap (1-294:1-294)
10 20 30 40 50 60
pF1KE5 MEELVVEVRGSNGAFYKAFVKDVHEDSITVAFENNWQPDRQIPFHDVRFPPPVGYNKDIN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MEELVVEVRGSNGAFYKAFVKDVHEDSITVAFENNWQPDRQIPFHDVRFPPPVGYNKDIN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 ESDEVEVYSRANEKEPCCWWLAKVRMIKGEFYVIEYAACDATYNEIVTIERLRSVNPNKP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ESDEVEVYSRANEKEPCCWWLAKVRMIKGEFYVIEYAACDATYNEIVTIERLRSVNPNKP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE5 ATKDTFHKIKLDVPEDLRQMCAKEAAHKDFKKAVGAFSVTYDPENYQLVILSINEVTSKR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ATKDTFHKIKLDVPEDLRQMCAKEAAHKDFKKAVGAFSVTYDPENYQLVILSINEVTSKR
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE5 AHMLIDMHFRSLRTKLSLIMRNEEASKQLESSRQLASRFHEQFIVREDLMGLAIGTHGAN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AHMLIDMHFRSLRTKLSLIMRNEEASKQLESSRQLASRFHEQFIVREDLMGLAIGTHGAN
190 200 210 220 230 240
250 260 270 280 290
pF1KE5 IQQARKVPGVTAIDLDEDTCTFHIYGEDQDAVKKARSFLEFAEDVIQVPRNLVGLKI
::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IQQARKVPGVTAIDLDEDTCTFHIYGEDQDAVKKARSFLEFAEDVIQVPRNLVGKVIGKN
250 260 270 280 290 300
NP_001 GKLIQEIVDKSGVVRVRIEAENEKNVPQEEEIMPPNSLPSNNSRVGPNAPEEKKHLDIKE
310 320 330 340 350 360
>>NP_001172005 (OMIM: 300623,300624,309550,311360) synap (611 aa)
initn: 1957 init1: 1957 opt: 1957 Z-score: 2414.4 bits: 455.8 E(85289): 9.7e-128
Smith-Waterman score: 1957; 100.0% identity (100.0% similar) in 294 aa overlap (1-294:1-294)
10 20 30 40 50 60
pF1KE5 MEELVVEVRGSNGAFYKAFVKDVHEDSITVAFENNWQPDRQIPFHDVRFPPPVGYNKDIN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MEELVVEVRGSNGAFYKAFVKDVHEDSITVAFENNWQPDRQIPFHDVRFPPPVGYNKDIN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 ESDEVEVYSRANEKEPCCWWLAKVRMIKGEFYVIEYAACDATYNEIVTIERLRSVNPNKP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ESDEVEVYSRANEKEPCCWWLAKVRMIKGEFYVIEYAACDATYNEIVTIERLRSVNPNKP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE5 ATKDTFHKIKLDVPEDLRQMCAKEAAHKDFKKAVGAFSVTYDPENYQLVILSINEVTSKR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ATKDTFHKIKLDVPEDLRQMCAKEAAHKDFKKAVGAFSVTYDPENYQLVILSINEVTSKR
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE5 AHMLIDMHFRSLRTKLSLIMRNEEASKQLESSRQLASRFHEQFIVREDLMGLAIGTHGAN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AHMLIDMHFRSLRTKLSLIMRNEEASKQLESSRQLASRFHEQFIVREDLMGLAIGTHGAN
190 200 210 220 230 240
250 260 270 280 290
pF1KE5 IQQARKVPGVTAIDLDEDTCTFHIYGEDQDAVKKARSFLEFAEDVIQVPRNLVGLKI
::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IQQARKVPGVTAIDLDEDTCTFHIYGEDQDAVKKARSFLEFAEDVIQVPRNLVGKVIGKN
250 260 270 280 290 300
NP_001 GKLIQEIVDKSGVVRVRIEAENEKNVPQEEEIMPPNSLPSNNSRVGPNAPEEKKHLDIKE
310 320 330 340 350 360
>>NP_002015 (OMIM: 300623,300624,309550,311360) synaptic (632 aa)
initn: 1957 init1: 1957 opt: 1957 Z-score: 2414.1 bits: 455.8 E(85289): 9.9e-128
Smith-Waterman score: 1957; 100.0% identity (100.0% similar) in 294 aa overlap (1-294:1-294)
10 20 30 40 50 60
pF1KE5 MEELVVEVRGSNGAFYKAFVKDVHEDSITVAFENNWQPDRQIPFHDVRFPPPVGYNKDIN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 MEELVVEVRGSNGAFYKAFVKDVHEDSITVAFENNWQPDRQIPFHDVRFPPPVGYNKDIN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 ESDEVEVYSRANEKEPCCWWLAKVRMIKGEFYVIEYAACDATYNEIVTIERLRSVNPNKP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 ESDEVEVYSRANEKEPCCWWLAKVRMIKGEFYVIEYAACDATYNEIVTIERLRSVNPNKP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE5 ATKDTFHKIKLDVPEDLRQMCAKEAAHKDFKKAVGAFSVTYDPENYQLVILSINEVTSKR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 ATKDTFHKIKLDVPEDLRQMCAKEAAHKDFKKAVGAFSVTYDPENYQLVILSINEVTSKR
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE5 AHMLIDMHFRSLRTKLSLIMRNEEASKQLESSRQLASRFHEQFIVREDLMGLAIGTHGAN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 AHMLIDMHFRSLRTKLSLIMRNEEASKQLESSRQLASRFHEQFIVREDLMGLAIGTHGAN
190 200 210 220 230 240
250 260 270 280 290
pF1KE5 IQQARKVPGVTAIDLDEDTCTFHIYGEDQDAVKKARSFLEFAEDVIQVPRNLVGLKI
::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 IQQARKVPGVTAIDLDEDTCTFHIYGEDQDAVKKARSFLEFAEDVIQVPRNLVGKVIGKN
250 260 270 280 290 300
NP_002 GKLIQEIVDKSGVVRVRIEAENEKNVPQEEEIMPPNSLPSNNSRVGPNAPEEKKHLDIKE
310 320 330 340 350 360
>>NP_001013456 (OMIM: 600819) fragile X mental retardati (539 aa)
initn: 1478 init1: 1478 opt: 1478 Z-score: 1824.2 bits: 346.4 E(85289): 7.2e-95
Smith-Waterman score: 1478; 74.1% identity (90.1% similar) in 294 aa overlap (1-294:1-294)
10 20 30 40 50 60
pF1KE5 MEELVVEVRGSNGAFYKAFVKDVHEDSITVAFENNWQPDRQIPFHDVRFPPPVGYNKDIN
: ::.::::::::::::.:.:::::::.::.:::::::.::.::..::.::: .:.:.
NP_001 MAELTVEVRGSNGAFYKGFIKDVHEDSLTVVFENNWQPERQVPFNEVRLPPPPDIKKEIS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 ESDEVEVYSRANEKEPCCWWLAKVRMIKGEFYVIEYAACDATYNEIVTIERLRSVNPNKP
:.::::::::::..::: ::::::::.:::::::::::::::::::::.:::: :: ::
NP_001 EGDEVEVYSRANDQEPCGWWLAKVRMMKGEFYVIEYAACDATYNEIVTFERLRPVNQNKT
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE5 ATKDTFHKIKLDVPEDLRQMCAKEAAHKDFKKAVGAFSVTYDPENYQLVILSINEVTSKR
. :.:: : .:::::::. ::.: ::::::::::: . : ::. ::.::: .:.: ::
NP_001 VKKNTFFKCTVDVPEDLREACANENAHKDFKKAVGACRIFYHPETTQLMILSASEATVKR
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE5 AHMLIDMHFRSLRTKLSLIMRNEEASKQLESSRQLASRFHEQFIVREDLMGLAIGTHGAN
...: :::.::.:::: :. :::::.:.:: ..:::. :::.:.::::::::::::::.:
NP_001 VNILSDMHLRSIRTKLMLMSRNEEATKHLECTKQLAAAFHEEFVVREDLMGLAIGTHGSN
190 200 210 220 230 240
250 260 270 280 290
pF1KE5 IQQARKVPGVTAIDLDEDTCTFHIYGEDQDAVKKARSFLEFAEDVIQVPRNLVGLKI
:::::::::::::.::::: ::.::::. :::::::.::::.:: :::::::::
NP_001 IQQARKVPGVTAIELDEDTGTFRIYGESADAVKKARGFLEFVEDFIQVPRNLVGKVIGKN
250 260 270 280 290 300
NP_001 GKVIQEIVDKSGVVRVRIEGDNENKLPREDGMVPFVFVGTKESIGNVQVLLEYHIAYLKE
310 320 330 340 350 360
>>XP_005247873 (OMIM: 600819) PREDICTED: fragile X menta (568 aa)
initn: 1478 init1: 1478 opt: 1478 Z-score: 1823.9 bits: 346.4 E(85289): 7.5e-95
Smith-Waterman score: 1478; 74.1% identity (90.1% similar) in 294 aa overlap (1-294:1-294)
10 20 30 40 50 60
pF1KE5 MEELVVEVRGSNGAFYKAFVKDVHEDSITVAFENNWQPDRQIPFHDVRFPPPVGYNKDIN
: ::.::::::::::::.:.:::::::.::.:::::::.::.::..::.::: .:.:.
XP_005 MAELTVEVRGSNGAFYKGFIKDVHEDSLTVVFENNWQPERQVPFNEVRLPPPPDIKKEIS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 ESDEVEVYSRANEKEPCCWWLAKVRMIKGEFYVIEYAACDATYNEIVTIERLRSVNPNKP
:.::::::::::..::: ::::::::.:::::::::::::::::::::.:::: :: ::
XP_005 EGDEVEVYSRANDQEPCGWWLAKVRMMKGEFYVIEYAACDATYNEIVTFERLRPVNQNKT
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE5 ATKDTFHKIKLDVPEDLRQMCAKEAAHKDFKKAVGAFSVTYDPENYQLVILSINEVTSKR
. :.:: : .:::::::. ::.: ::::::::::: . : ::. ::.::: .:.: ::
XP_005 VKKNTFFKCTVDVPEDLREACANENAHKDFKKAVGACRIFYHPETTQLMILSASEATVKR
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE5 AHMLIDMHFRSLRTKLSLIMRNEEASKQLESSRQLASRFHEQFIVREDLMGLAIGTHGAN
...: :::.::.:::: :. :::::.:.:: ..:::. :::.:.::::::::::::::.:
XP_005 VNILSDMHLRSIRTKLMLMSRNEEATKHLECTKQLAAAFHEEFVVREDLMGLAIGTHGSN
190 200 210 220 230 240
250 260 270 280 290
pF1KE5 IQQARKVPGVTAIDLDEDTCTFHIYGEDQDAVKKARSFLEFAEDVIQVPRNLVGLKI
:::::::::::::.::::: ::.::::. :::::::.::::.:: :::::::::
XP_005 IQQARKVPGVTAIELDEDTGTFRIYGESADAVKKARGFLEFVEDFIQVPRNLVGKVIGKN
250 260 270 280 290 300
XP_005 GKVIQEIVDKSGVVRVRIEGDNENKLPREDGMVPFVFVGTKESIGNVQVLLEYHIAYLKE
310 320 330 340 350 360
>>NP_005078 (OMIM: 600819) fragile X mental retardation (621 aa)
initn: 1478 init1: 1478 opt: 1478 Z-score: 1823.2 bits: 346.4 E(85289): 8.1e-95
Smith-Waterman score: 1478; 74.1% identity (90.1% similar) in 294 aa overlap (1-294:1-294)
10 20 30 40 50 60
pF1KE5 MEELVVEVRGSNGAFYKAFVKDVHEDSITVAFENNWQPDRQIPFHDVRFPPPVGYNKDIN
: ::.::::::::::::.:.:::::::.::.:::::::.::.::..::.::: .:.:.
NP_005 MAELTVEVRGSNGAFYKGFIKDVHEDSLTVVFENNWQPERQVPFNEVRLPPPPDIKKEIS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 ESDEVEVYSRANEKEPCCWWLAKVRMIKGEFYVIEYAACDATYNEIVTIERLRSVNPNKP
:.::::::::::..::: ::::::::.:::::::::::::::::::::.:::: :: ::
NP_005 EGDEVEVYSRANDQEPCGWWLAKVRMMKGEFYVIEYAACDATYNEIVTFERLRPVNQNKT
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE5 ATKDTFHKIKLDVPEDLRQMCAKEAAHKDFKKAVGAFSVTYDPENYQLVILSINEVTSKR
. :.:: : .:::::::. ::.: ::::::::::: . : ::. ::.::: .:.: ::
NP_005 VKKNTFFKCTVDVPEDLREACANENAHKDFKKAVGACRIFYHPETTQLMILSASEATVKR
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE5 AHMLIDMHFRSLRTKLSLIMRNEEASKQLESSRQLASRFHEQFIVREDLMGLAIGTHGAN
...: :::.::.:::: :. :::::.:.:: ..:::. :::.:.::::::::::::::.:
NP_005 VNILSDMHLRSIRTKLMLMSRNEEATKHLECTKQLAAAFHEEFVVREDLMGLAIGTHGSN
190 200 210 220 230 240
250 260 270 280 290
pF1KE5 IQQARKVPGVTAIDLDEDTCTFHIYGEDQDAVKKARSFLEFAEDVIQVPRNLVGLKI
:::::::::::::.::::: ::.::::. :::::::.::::.:: :::::::::
NP_005 IQQARKVPGVTAIELDEDTGTFRIYGESADAVKKARGFLEFVEDFIQVPRNLVGKVIGKN
250 260 270 280 290 300
NP_005 GKVIQEIVDKSGVVRVRIEGDNENKLPREDGMVPFVFVGTKESIGNVQVLLEYHIAYLKE
310 320 330 340 350 360
>>XP_005247872 (OMIM: 600819) PREDICTED: fragile X menta (648 aa)
initn: 1478 init1: 1478 opt: 1478 Z-score: 1822.9 bits: 346.4 E(85289): 8.4e-95
Smith-Waterman score: 1478; 74.1% identity (90.1% similar) in 294 aa overlap (1-294:1-294)
10 20 30 40 50 60
pF1KE5 MEELVVEVRGSNGAFYKAFVKDVHEDSITVAFENNWQPDRQIPFHDVRFPPPVGYNKDIN
: ::.::::::::::::.:.:::::::.::.:::::::.::.::..::.::: .:.:.
XP_005 MAELTVEVRGSNGAFYKGFIKDVHEDSLTVVFENNWQPERQVPFNEVRLPPPPDIKKEIS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 ESDEVEVYSRANEKEPCCWWLAKVRMIKGEFYVIEYAACDATYNEIVTIERLRSVNPNKP
:.::::::::::..::: ::::::::.:::::::::::::::::::::.:::: :: ::
XP_005 EGDEVEVYSRANDQEPCGWWLAKVRMMKGEFYVIEYAACDATYNEIVTFERLRPVNQNKT
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE5 ATKDTFHKIKLDVPEDLRQMCAKEAAHKDFKKAVGAFSVTYDPENYQLVILSINEVTSKR
. :.:: : .:::::::. ::.: ::::::::::: . : ::. ::.::: .:.: ::
XP_005 VKKNTFFKCTVDVPEDLREACANENAHKDFKKAVGACRIFYHPETTQLMILSASEATVKR
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE5 AHMLIDMHFRSLRTKLSLIMRNEEASKQLESSRQLASRFHEQFIVREDLMGLAIGTHGAN
...: :::.::.:::: :. :::::.:.:: ..:::. :::.:.::::::::::::::.:
XP_005 VNILSDMHLRSIRTKLMLMSRNEEATKHLECTKQLAAAFHEEFVVREDLMGLAIGTHGSN
190 200 210 220 230 240
250 260 270 280 290
pF1KE5 IQQARKVPGVTAIDLDEDTCTFHIYGEDQDAVKKARSFLEFAEDVIQVPRNLVGLKI
:::::::::::::.::::: ::.::::. :::::::.::::.:: :::::::::
XP_005 IQQARKVPGVTAIELDEDTGTFRIYGESADAVKKARGFLEFVEDFIQVPRNLVGKVIGKN
250 260 270 280 290 300
XP_005 GKVIQEIVDKSGVVRVRIEGDNENKLPREDGMVPFVFVGTKESIGNVQVLLEYHIAYLKE
310 320 330 340 350 360
>>XP_005247871 (OMIM: 600819) PREDICTED: fragile X menta (650 aa)
initn: 1478 init1: 1478 opt: 1478 Z-score: 1822.9 bits: 346.4 E(85289): 8.5e-95
Smith-Waterman score: 1478; 74.1% identity (90.1% similar) in 294 aa overlap (1-294:1-294)
10 20 30 40 50 60
pF1KE5 MEELVVEVRGSNGAFYKAFVKDVHEDSITVAFENNWQPDRQIPFHDVRFPPPVGYNKDIN
: ::.::::::::::::.:.:::::::.::.:::::::.::.::..::.::: .:.:.
XP_005 MAELTVEVRGSNGAFYKGFIKDVHEDSLTVVFENNWQPERQVPFNEVRLPPPPDIKKEIS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 ESDEVEVYSRANEKEPCCWWLAKVRMIKGEFYVIEYAACDATYNEIVTIERLRSVNPNKP
:.::::::::::..::: ::::::::.:::::::::::::::::::::.:::: :: ::
XP_005 EGDEVEVYSRANDQEPCGWWLAKVRMMKGEFYVIEYAACDATYNEIVTFERLRPVNQNKT
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE5 ATKDTFHKIKLDVPEDLRQMCAKEAAHKDFKKAVGAFSVTYDPENYQLVILSINEVTSKR
. :.:: : .:::::::. ::.: ::::::::::: . : ::. ::.::: .:.: ::
XP_005 VKKNTFFKCTVDVPEDLREACANENAHKDFKKAVGACRIFYHPETTQLMILSASEATVKR
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE5 AHMLIDMHFRSLRTKLSLIMRNEEASKQLESSRQLASRFHEQFIVREDLMGLAIGTHGAN
...: :::.::.:::: :. :::::.:.:: ..:::. :::.:.::::::::::::::.:
XP_005 VNILSDMHLRSIRTKLMLMSRNEEATKHLECTKQLAAAFHEEFVVREDLMGLAIGTHGSN
190 200 210 220 230 240
250 260 270 280 290
pF1KE5 IQQARKVPGVTAIDLDEDTCTFHIYGEDQDAVKKARSFLEFAEDVIQVPRNLVGLKI
:::::::::::::.::::: ::.::::. :::::::.::::.:: :::::::::
XP_005 IQQARKVPGVTAIELDEDTGTFRIYGESADAVKKARGFLEFVEDFIQVPRNLVGKVIGKN
250 260 270 280 290 300
XP_005 GKVIQEIVDKSGVVRVRIEGDNENKLPREDGMVPFVFVGTKESIGNVQVLLEYHIAYLKE
310 320 330 340 350 360
297 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 00:00:55 2016 done: Tue Nov 8 00:00:56 2016
Total Scan time: 7.030 Total Display time: 0.020
Function used was FASTA [36.3.4 Apr, 2011]