FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5346, 285 aa
  1>>>pF1KE5346 285 - 285 aa - 285 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.0345+/-0.000876; mu= 8.9331+/- 0.053
 mean_var=130.5124+/-25.540, 0's: 0 Z-trim(111.2): 6  B-trim: 0 in 0/52
 Lambda= 0.112266
 statistics sampled from 12227 (12229) to 12227 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.748), E-opt: 0.2 (0.376), width:  16
 Scan time:  2.400

The best scores are:                                      opt bits E(32554)
CCDS7944.1 AGBL2 gene_id:79841|Hs108|chr11         ( 902) 1908 320.0 3.8e-87
CCDS47718.1 AGBL3 gene_id:340351|Hs108|chr7        ( 920)  420 79.0 1.4e-14


>>CCDS7944.1 AGBL2 gene_id:79841|Hs108|chr11              (902 aa)
 initn: 1908 init1: 1908 opt: 1908  Z-score: 1678.1  bits: 320.0 E(32554): 3.8e-87
Smith-Waterman score: 1908; 99.6% identity (100.0% similar) in 285 aa overlap (1-285:618-902)

                                             10        20        30
pF1KE5                               MWRMGILNSYTMESTFGGSTLGNKRDTHFT
                                     ::::::::::::::::::::::::::::::
CCDS79 MLCKNAPDKFSFHSCNFKVQKCKEGTGRVVMWRMGILNSYTMESTFGGSTLGNKRDTHFT
       590       600       610       620       630       640       

               40        50        60        70        80        90
pF1KE5 IEDLKSLGYHVCDTLLDFCDPDQIKFTQCLAELKELLRQEIHKKFHELGQDVDLEGSWSD
       :::::::::::::::::::::::.::::::::::::::::::::::::::::::::::::
CCDS79 IEDLKSLGYHVCDTLLDFCDPDQMKFTQCLAELKELLRQEIHKKFHELGQDVDLEGSWSD
       650       660       670       680       690       700       

              100       110       120       130       140       150
pF1KE5 ISLSDIESSTSGSDSSLSDGLPVHLANIADELTQKKKMFKKKKKKSLQTRKQRNEQYQKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS79 ISLSDIESSTSGSDSSLSDGLPVHLANIADELTQKKKMFKKKKKKSLQTRKQRNEQYQKK
       710       720       730       740       750       760       

              160       170       180       190       200       210
pF1KE5 NLMQKLKLTEDTSEKAGFASTLQKQPTFFKNSENSSFLPMKNENPRLNETNLNRRDKDTP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS79 NLMQKLKLTEDTSEKAGFASTLQKQPTFFKNSENSSFLPMKNENPRLNETNLNRRDKDTP
       770       780       790       800       810       820       

              220       230       240       250       260       270
pF1KE5 LDPSMATLILPKNKGRMQNKKPGFTVSCSPKRTINSSQEPAPGMKPNWPRSRYPATKRGC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS79 LDPSMATLILPKNKGRMQNKKPGFTVSCSPKRTINSSQEPAPGMKPNWPRSRYPATKRGC
       830       840       850       860       870       880       

              280     
pF1KE5 AAMAAYPSLHIYTYP
       :::::::::::::::
CCDS79 AAMAAYPSLHIYTYP
       890       900  

>>CCDS47718.1 AGBL3 gene_id:340351|Hs108|chr7             (920 aa)
 initn: 446 init1: 348 opt: 420  Z-score: 375.4  bits: 79.0 E(32554): 1.4e-14
Smith-Waterman score: 440; 47.5% identity (71.2% similar) in 160 aa overlap (1-155:522-670)

                                             10        20        30
pF1KE5                               MWRMGILNSYTMESTFGGSTLGNKRDTHFT
                                     ::.::: ::.:::.:: :::::::: :::.
CCDS47 MLSKNCPDKFSFSACKFNVQKSKEGTGRVVMWKMGIRNSFTMEATFCGSTLGNKRGTHFS
             500       510       520       530       540       550 

               40        50        60        70        80        90
pF1KE5 IEDLKSLGYHVCDTLLDFCDPDQIKFTQCLAELKELLRQEIHKKFHELGQDVDLEGSWSD
        .::.:.::: ::.:::.::::. :. .:: ::.:. :   :  .... .: :      :
CCDS47 TKDLESMGYHFCDSLLDYCDPDRTKYYRCLKELEEMER---HITLEKVFEDSDT--PVID
             560       570       580          590       600        

              100        110       120       130       140         
pF1KE5 ISLSDIESSTSGSDSSLS-DGLPVHLANIADELTQKKKMFKKKKKKSLQTRKQRN----E
       :.: :.:::. ::::: : :.:   :     .::..:: .: ::...    ...:    :
CCDS47 ITL-DVESSSRGSDSSESIDSLTYLL-----KLTSQKKHLKTKKERNSTIASHQNARGQE
         610       620       630            640       650       660

         150       160       170       180       190       200     
pF1KE5 QYQKKNLMQKLKLTEDTSEKAGFASTLQKQPTFFKNSENSSFLPMKNENPRLNETNLNRR
        :.. .:.:.                                                  
CCDS47 VYDRGHLLQRHTQSNSDVKDTRPNEPDDYMVDYFRRQLPNQGLDLHHNLKSKIKECISFQ
              670       680       690       700       710       720




285 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 23:59:13 2016 done: Mon Nov  7 23:59:13 2016
 Total Scan time:  2.400 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]