FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5340, 263 aa
  1>>>pF1KE5340 263 - 263 aa - 263 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.4700+/-0.000828; mu= 13.2990+/- 0.049
 mean_var=57.0886+/-11.551, 0's: 0 Z-trim(104.9): 20  B-trim: 0 in 0/51
 Lambda= 0.169746
 statistics sampled from 8154 (8160) to 8154 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.642), E-opt: 0.2 (0.251), width:  16
 Scan time:  1.870

The best scores are:                                      opt bits E(32554)
CCDS14418.1 RPS4X gene_id:6191|Hs108|chrX          ( 263) 1761 439.4 1.2e-123
CCDS14773.1 RPS4Y1 gene_id:6192|Hs108|chrY         ( 263) 1668 416.7 8.4e-117
CCDS44028.1 RPS4Y2 gene_id:140032|Hs108|chrY       ( 263) 1631 407.6 4.5e-114


>>CCDS14418.1 RPS4X gene_id:6191|Hs108|chrX               (263 aa)
 initn: 1761 init1: 1761 opt: 1761  Z-score: 2333.5  bits: 439.4 E(32554): 1.2e-123
Smith-Waterman score: 1761; 100.0% identity (100.0% similar) in 263 aa overlap (1-263:1-263)

               10        20        30        40        50        60
pF1KE5 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 VKKICMQRFIKIDGKVRTDITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRITPEEAK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 VKKICMQRFIKIDGKVRTDITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRITPEEAK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 YKLCKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 YKLCKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE5 CMVTGGANLGRIGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 CMVTGGANLGRIGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPR
              190       200       210       220       230       240

              250       260   
pF1KE5 GKGIRLTIAEERDKRLAAKQSSG
       :::::::::::::::::::::::
CCDS14 GKGIRLTIAEERDKRLAAKQSSG
              250       260   

>>CCDS14773.1 RPS4Y1 gene_id:6192|Hs108|chrY              (263 aa)
 initn: 1668 init1: 1668 opt: 1668  Z-score: 2210.5  bits: 416.7 E(32554): 8.4e-117
Smith-Waterman score: 1668; 92.8% identity (98.1% similar) in 263 aa overlap (1-263:1-263)

               10        20        30        40        50        60
pF1KE5 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDE
       :::::::::::::::::::::::::::::::::::::::::::::.::::::::::::::
CCDS14 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIVFLRNRLKYALTGDE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 VKKICMQRFIKIDGKVRTDITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRITPEEAK
       :::::::::::::::::.:.::::::::::::.::::.:::.::::::::::::: ::::
CCDS14 VKKICMQRFIKIDGKVRVDVTYPAGFMDVISIEKTGEHFRLVYDTKGRFAVHRITVEEAK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 YKLCKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNL
       ::::::::: ::.:::::::::::::::::::.::::::.:::: :::: .:::::::::
CCDS14 YKLCKVRKITVGVKGIPHLVTHDARTIRYPDPVIKVNDTVQIDLGTGKIINFIKFDTGNL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE5 CMVTGGANLGRIGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPR
       ::: :::::::.:::::::::::::::::::::::::::::::::::::.::::::::::
CCDS14 CMVIGGANLGRVGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGNGNKPWISLPR
              190       200       210       220       230       240

              250       260   
pF1KE5 GKGIRLTIAEERDKRLAAKQSSG
       :::::::.:::::::::.:::::
CCDS14 GKGIRLTVAEERDKRLATKQSSG
              250       260   

>>CCDS44028.1 RPS4Y2 gene_id:140032|Hs108|chrY            (263 aa)
 initn: 1631 init1: 1631 opt: 1631  Z-score: 2161.5  bits: 407.6 E(32554): 4.5e-114
Smith-Waterman score: 1631; 91.6% identity (97.7% similar) in 263 aa overlap (1-263:1-263)

               10        20        30        40        50        60
pF1KE5 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDE
       :::::::::::::::::::::::::::::::::::::::::::::.::::::::::::::
CCDS44 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIVFLRNRLKYALTGDE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 VKKICMQRFIKIDGKVRTDITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRITPEEAK
       :::::::.:.:::::::.::::::::.:::::.::::.:::.:.::: ::::::: ::::
CCDS44 VKKICMQHFLKIDGKVRVDITYPAGFIDVISIEKTGEHFRLVYNTKGCFAVHRITVEEAK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 YKLCKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNL
       ::::::::: :::::::::::::::::::::::::::::.:::: :::::.::::::::.
CCDS44 YKLCKVRKITVGTKGIPHLVTHDARTIRYPDPLIKVNDTVQIDLGTGKITSFIKFDTGNV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE5 CMVTGGANLGRIGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPR
       ::: .::::::.:::::::::::: ::::::::::::::::.:::::::.::::::::::
CCDS44 CMVIAGANLGRVGVITNRERHPGSCDVVHVKDANGNSFATRISNIFVIGNGNKPWISLPR
              190       200       210       220       230       240

              250       260   
pF1KE5 GKGIRLTIAEERDKRLAAKQSSG
       :::::::::::::::::::::::
CCDS44 GKGIRLTIAEERDKRLAAKQSSG
              250       260   




263 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 23:56:09 2016 done: Mon Nov  7 23:56:09 2016
 Total Scan time:  1.870 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]