FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5339, 264 aa
  1>>>pF1KE5339 264 - 264 aa - 264 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.1577+/-0.000386; mu= 15.2893+/- 0.024
 mean_var=59.1023+/-11.775, 0's: 0 Z-trim(110.8): 9  B-trim: 0 in 0/54
 Lambda= 0.166829
 statistics sampled from 19196 (19199) to 19196 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.597), E-opt: 0.2 (0.225), width:  16
 Scan time:  6.310

The best scores are:                                      opt bits E(85289)
NP_001191742 (OMIM: 129190,211800) 5'-nucleotidase ( 524) 1650 405.7 8.6e-113
NP_002517 (OMIM: 129190,211800) 5'-nucleotidase is ( 574) 1650 405.8 9.3e-113


>>NP_001191742 (OMIM: 129190,211800) 5'-nucleotidase iso  (524 aa)
 initn: 1650 init1: 1650 opt: 1650  Z-score: 2146.0  bits: 405.7 E(85289): 8.6e-113
Smith-Waterman score: 1650; 100.0% identity (100.0% similar) in 252 aa overlap (1-252:1-252)

               10        20        30        40        50        60
pF1KE5 MCPRAARAPATLLLALGAVLWPAAGAWELTILHTNDVHSRLEQTSEDSSKCVNASRCMGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MCPRAARAPATLLLALGAVLWPAAGAWELTILHTNDVHSRLEQTSEDSSKCVNASRCMGG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 VARLFTKVQQIRRAEPNVLLLDAGDQYQGTIWFTVYKGAEVAHFMNALRYDAMALGNHEF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VARLFTKVQQIRRAEPNVLLLDAGDQYQGTIWFTVYKGAEVAHFMNALRYDAMALGNHEF
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 DNGVEGLIEPLLKEAKFPILSANIKAKGPLASQISGLYLPYKVLPVGDEVVGIVGYTSKE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DNGVEGLIEPLLKEAKFPILSANIKAKGPLASQISGLYLPYKVLPVGDEVVGIVGYTSKE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE5 TPFLSNPGTNLVFEDEITALQPEVDKLKTLNVNKIIALGHSGFEMDKLIAQKVRGVDVVV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TPFLSNPGTNLVFEDEITALQPEVDKLKTLNVNKIIALGHSGFEMDKLIAQKVRGVDVVV
              190       200       210       220       230       240

              250       260                                        
pF1KE5 GGHSNTFLYTGNCFKRIAWARMSR                                    
       ::::::::::::                                                
NP_001 GGHSNTFLYTGNPPSKEVPAGKYPFIVTSDDGRKVPVVQAYAFGKYLGYLKIEFDERGNV
              250       260       270       280       290       300

>>NP_002517 (OMIM: 129190,211800) 5'-nucleotidase isofor  (574 aa)
 initn: 1650 init1: 1650 opt: 1650  Z-score: 2145.4  bits: 405.8 E(85289): 9.3e-113
Smith-Waterman score: 1650; 100.0% identity (100.0% similar) in 252 aa overlap (1-252:1-252)

               10        20        30        40        50        60
pF1KE5 MCPRAARAPATLLLALGAVLWPAAGAWELTILHTNDVHSRLEQTSEDSSKCVNASRCMGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 MCPRAARAPATLLLALGAVLWPAAGAWELTILHTNDVHSRLEQTSEDSSKCVNASRCMGG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 VARLFTKVQQIRRAEPNVLLLDAGDQYQGTIWFTVYKGAEVAHFMNALRYDAMALGNHEF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 VARLFTKVQQIRRAEPNVLLLDAGDQYQGTIWFTVYKGAEVAHFMNALRYDAMALGNHEF
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 DNGVEGLIEPLLKEAKFPILSANIKAKGPLASQISGLYLPYKVLPVGDEVVGIVGYTSKE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 DNGVEGLIEPLLKEAKFPILSANIKAKGPLASQISGLYLPYKVLPVGDEVVGIVGYTSKE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE5 TPFLSNPGTNLVFEDEITALQPEVDKLKTLNVNKIIALGHSGFEMDKLIAQKVRGVDVVV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 TPFLSNPGTNLVFEDEITALQPEVDKLKTLNVNKIIALGHSGFEMDKLIAQKVRGVDVVV
              190       200       210       220       230       240

              250       260                                        
pF1KE5 GGHSNTFLYTGNCFKRIAWARMSR                                    
       ::::::::::::                                                
NP_002 GGHSNTFLYTGNPPSKEVPAGKYPFIVTSDDGRKVPVVQAYAFGKYLGYLKIEFDERGNV
              250       260       270       280       290       300




264 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 23:55:25 2016 done: Mon Nov  7 23:55:26 2016
 Total Scan time:  6.310 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]