FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5339, 264 aa
  1>>>pF1KE5339 264 - 264 aa - 264 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.4500+/-0.000899; mu= 13.3746+/- 0.054
 mean_var=57.2601+/-11.586, 0's: 0 Z-trim(104.3): 11  B-trim: 386 in 1/49
 Lambda= 0.169492
 statistics sampled from 7849 (7851) to 7849 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.621), E-opt: 0.2 (0.241), width:  16
 Scan time:  2.270

The best scores are:                                      opt bits E(32554)
CCDS56439.1 NT5E gene_id:4907|Hs108|chr6           ( 524) 1650 411.8 4.8e-115
CCDS5002.1 NT5E gene_id:4907|Hs108|chr6            ( 574) 1650 411.8 5.3e-115


>>CCDS56439.1 NT5E gene_id:4907|Hs108|chr6                (524 aa)
 initn: 1650 init1: 1650 opt: 1650  Z-score: 2178.8  bits: 411.8 E(32554): 4.8e-115
Smith-Waterman score: 1650; 100.0% identity (100.0% similar) in 252 aa overlap (1-252:1-252)

               10        20        30        40        50        60
pF1KE5 MCPRAARAPATLLLALGAVLWPAAGAWELTILHTNDVHSRLEQTSEDSSKCVNASRCMGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 MCPRAARAPATLLLALGAVLWPAAGAWELTILHTNDVHSRLEQTSEDSSKCVNASRCMGG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 VARLFTKVQQIRRAEPNVLLLDAGDQYQGTIWFTVYKGAEVAHFMNALRYDAMALGNHEF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 VARLFTKVQQIRRAEPNVLLLDAGDQYQGTIWFTVYKGAEVAHFMNALRYDAMALGNHEF
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 DNGVEGLIEPLLKEAKFPILSANIKAKGPLASQISGLYLPYKVLPVGDEVVGIVGYTSKE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 DNGVEGLIEPLLKEAKFPILSANIKAKGPLASQISGLYLPYKVLPVGDEVVGIVGYTSKE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE5 TPFLSNPGTNLVFEDEITALQPEVDKLKTLNVNKIIALGHSGFEMDKLIAQKVRGVDVVV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 TPFLSNPGTNLVFEDEITALQPEVDKLKTLNVNKIIALGHSGFEMDKLIAQKVRGVDVVV
              190       200       210       220       230       240

              250       260                                        
pF1KE5 GGHSNTFLYTGNCFKRIAWARMSR                                    
       ::::::::::::                                                
CCDS56 GGHSNTFLYTGNPPSKEVPAGKYPFIVTSDDGRKVPVVQAYAFGKYLGYLKIEFDERGNV
              250       260       270       280       290       300

>>CCDS5002.1 NT5E gene_id:4907|Hs108|chr6                 (574 aa)
 initn: 1650 init1: 1650 opt: 1650  Z-score: 2178.2  bits: 411.8 E(32554): 5.3e-115
Smith-Waterman score: 1650; 100.0% identity (100.0% similar) in 252 aa overlap (1-252:1-252)

               10        20        30        40        50        60
pF1KE5 MCPRAARAPATLLLALGAVLWPAAGAWELTILHTNDVHSRLEQTSEDSSKCVNASRCMGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS50 MCPRAARAPATLLLALGAVLWPAAGAWELTILHTNDVHSRLEQTSEDSSKCVNASRCMGG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 VARLFTKVQQIRRAEPNVLLLDAGDQYQGTIWFTVYKGAEVAHFMNALRYDAMALGNHEF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS50 VARLFTKVQQIRRAEPNVLLLDAGDQYQGTIWFTVYKGAEVAHFMNALRYDAMALGNHEF
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 DNGVEGLIEPLLKEAKFPILSANIKAKGPLASQISGLYLPYKVLPVGDEVVGIVGYTSKE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS50 DNGVEGLIEPLLKEAKFPILSANIKAKGPLASQISGLYLPYKVLPVGDEVVGIVGYTSKE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE5 TPFLSNPGTNLVFEDEITALQPEVDKLKTLNVNKIIALGHSGFEMDKLIAQKVRGVDVVV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS50 TPFLSNPGTNLVFEDEITALQPEVDKLKTLNVNKIIALGHSGFEMDKLIAQKVRGVDVVV
              190       200       210       220       230       240

              250       260                                        
pF1KE5 GGHSNTFLYTGNCFKRIAWARMSR                                    
       ::::::::::::                                                
CCDS50 GGHSNTFLYTGNPPSKEVPAGKYPFIVTSDDGRKVPVVQAYAFGKYLGYLKIEFDERGNV
              250       260       270       280       290       300




264 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 23:55:24 2016 done: Mon Nov  7 23:55:25 2016
 Total Scan time:  2.270 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]