Result of FASTA (ccds) for
pFN21AE5337
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE5337, 259 aa
1>>>pF1KE5337 259 - 259 aa - 259 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 9.0753+/-0.00112; mu= 0.3644+/- 0.068
mean_var=250.3174+/-50.408, 0's: 0 Z-trim(112.4): 19 B-trim: 182 in 2/49
Lambda= 0.081064
statistics sampled from 13113 (13128) to 13113 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.71), E-opt: 0.2 (0.403), width: 16
Scan time: 2.240
The best scores are: opt bits E(32554)
CCDS6037.1 TNFRSF10C gene_id:8794|Hs108|chr8 ( 259) 1754 217.4 8e-57
CCDS6038.1 TNFRSF10D gene_id:8793|Hs108|chr8 ( 386) 819 108.2 8.9e-24
CCDS6039.1 TNFRSF10A gene_id:8797|Hs108|chr8 ( 468) 644 87.8 1.5e-17
CCDS6035.1 TNFRSF10B gene_id:8795|Hs108|chr8 ( 440) 599 82.5 5.5e-16
CCDS6036.1 TNFRSF10B gene_id:8795|Hs108|chr8 ( 411) 523 73.6 2.5e-13
>>CCDS6037.1 TNFRSF10C gene_id:8794|Hs108|chr8 (259 aa)
initn: 1754 init1: 1754 opt: 1754 Z-score: 1133.6 bits: 217.4 E(32554): 8e-57
Smith-Waterman score: 1754; 99.6% identity (99.6% similar) in 259 aa overlap (1-259:1-259)
10 20 30 40 50 60
pF1KE5 MARIPKTLKFVVVIVAVLLPVLAYSATTARQEEVPQQTVAPQQQRHSFKGEECPAGSHRS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 MARIPKTLKFVVVIVAVLLPVLAYSATTARQEEVPQQTVAPQQQRHSFKGEECPAGSHRS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 EHTGACNPCTEGVDYTNASNNEPSCFPCTVCKSDQKHKSSCTMTRDTVCQCKEGTFRNEN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 EHTGACNPCTEGVDYTNASNNEPSCFPCTVCKSDQKHKSSCTMTRDTVCQCKEGTFRNEN
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE5 SPEMCRKCSRCPSGEVQVSNCTSWDDIQCVEEFGANATVETPAAEETMNTSPGTPAPAAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 SPEMCRKCSRCPSGEVQVSNCTSWDDIQCVEEFGANATVETPAAEETMNTSPGTPAPAAE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE5 ETMNTSPGTPAPAAEETMTTSPGTPAPAAEETMTTSPGTPAPAAEETMTTSPGTPASSHY
:::::::::::::::::::::::::::::::::::::::::::::::: :::::::::::
CCDS60 ETMNTSPGTPAPAAEETMTTSPGTPAPAAEETMTTSPGTPAPAAEETMITSPGTPASSHY
190 200 210 220 230 240
250
pF1KE5 LSCTIVGIIVLIVLLIVFV
:::::::::::::::::::
CCDS60 LSCTIVGIIVLIVLLIVFV
250
>>CCDS6038.1 TNFRSF10D gene_id:8793|Hs108|chr8 (386 aa)
initn: 937 init1: 680 opt: 819 Z-score: 540.3 bits: 108.2 E(32554): 8.9e-24
Smith-Waterman score: 819; 71.2% identity (85.3% similar) in 170 aa overlap (5-173:35-204)
10 20 30
pF1KE5 MARIPKTLKFVVVIVAVLLPVLAYSATTARQEEV
:: ::::: :::::::: . ::: ::.::
CCDS60 GQSVPTASSARAGRYPGARTASGTRPWLLDPKILKFVVFIVAVLLPVRVDSATIPRQDEV
10 20 30 40 50 60
40 50 60 70 80 90
pF1KE5 PQQTVAPQQQRHSFKGEECPAGSHRSEHTGACNPCTEGVDYTNASNNEPSCFPCTVCKSD
:::::::::::.:.: :::::::::::.:::::::::::::: :::: :::. ::::::
CCDS60 PQQTVAPQQQRRSLKEEECPAGSHRSEYTGACNPCTEGVDYTIASNNLPSCLLCTVCKSG
70 80 90 100 110 120
100 110 120 130 140 150
pF1KE5 QKHKSSCTMTRDTVCQCKEGTFRNENSPEMCRKC-SRCPSGEVQVSNCTSWDDIQCVEEF
: .::::: ::::::::..:.:...::::::: : . :: : :.::::: .::.: .:
CCDS60 QTNKSSCTTTRDTVCQCEKGSFQDKNSPEMCRTCRTGCPRGMVKVSNCTPRSDIKCKNES
130 140 150 160 170 180
160 170 180 190 200 210
pF1KE5 GANATVETPAAEETMNTSPGTPAPAAEETMNTSPGTPAPAAEETMTTSPGTPAPAAEETM
.:..: .:::::::..: :
CCDS60 AASSTGKTPAAEETVTTILGMLASPYHYLIIIVVLVIILAVVVVGFSCRKKFISYLKGIC
190 200 210 220 230 240
>>CCDS6039.1 TNFRSF10A gene_id:8797|Hs108|chr8 (468 aa)
initn: 616 init1: 490 opt: 644 Z-score: 428.6 bits: 87.8 E(32554): 1.5e-17
Smith-Waterman score: 644; 60.0% identity (80.0% similar) in 155 aa overlap (3-156:87-236)
10 20 30
pF1KE5 MARIPKTLKFVVVIVAVLLPVLAYSATTARQE
:. ::.::::: .::: :. ::.: . .
CCDS60 TSMGQHGPSARARAGRAPGPRPAREASPRLRVHKTFKFVVV--GVLLQVVPSSAATIKLH
60 70 80 90 100 110
40 50 60 70 80 90
pF1KE5 EVPQQTVAPQQQRHSFKGEECPAGSHRSEHTGACNPCTEGVDYTNASNNEPSCFPCTVCK
. :... :: .:: :: :: ::::::: :::: ::::: ::::::: .:.:::.::
CCDS60 D---QSIGTQQWEHSPLGELCPPGSHRSEHPGACNRCTEGVGYTNASNNLFACLPCTACK
120 130 140 150 160 170
100 110 120 130 140 150
pF1KE5 SDQKHKSSCTMTRDTVCQCKEGTFRNENSPEMCRKCSR-CPSGEVQVSNCTSWDDIQCVE
::....: :: ::.:.:::: :::::.:: :::::::: :: : :.:..:: :.::.::.
CCDS60 SDEEERSPCTTTRNTACQCKPGTFRNDNSAEMCRKCSRGCPRGMVKVKDCTPWSDIECVH
180 190 200 210 220 230
160 170 180 190 200 210
pF1KE5 EFGANATVETPAAEETMNTSPGTPAPAAEETMNTSPGTPAPAAEETMTTSPGTPAPAAEE
. ..:
CCDS60 KESGNGHNIWVILVVTLVVPLLLVAVLIVCCCIGSGCGGDPKCMDRVCFWRLGLLRGPGA
240 250 260 270 280 290
>>CCDS6035.1 TNFRSF10B gene_id:8795|Hs108|chr8 (440 aa)
initn: 685 init1: 403 opt: 599 Z-score: 400.5 bits: 82.5 E(32554): 5.5e-16
Smith-Waterman score: 599; 52.3% identity (72.7% similar) in 176 aa overlap (3-176:33-206)
10 20 30
pF1KE5 MARIPKTLKFVVVIVAVLLPVLAYSATTARQE
:.:::: :.:..:::: : : :: ..:.
CCDS60 QRGQNAPAASGARKRHGPGPREARGARPGPRVPKTL--VLVVAAVLLLVSAESALITQQD
10 20 30 40 50 60
40 50 60 70 80 90
pF1KE5 EVPQQTVAPQQQRHSFKGEECPAGSHRSEHTGACNPCTEGVDYTNASNNEPSCFPCTVCK
.::: .::::.: : . :: : : :: : : : ::.. :. :. :: :
CCDS60 LAPQQRAAPQQKRSSPSEGLCPPGHHISEDGRDCISCKYGQDYSTHWNDLLFCLRCTRCD
70 80 90 100 110 120
100 110 120 130 140 150
pF1KE5 SDQKHKSSCTMTRDTVCQCKEGTFRNENSPEMCRKC-SRCPSGEVQVSNCTSWDDIQCV-
: . . : :: ::.:::::.:::::.:.:::::::: . :: : :.:..:: :.::.::
CCDS60 SGEVELSPCTTTRNTVCQCEEGTFREEDSPEMCRKCRTGCPRGMVKVGDCTPWSDIECVH
130 140 150 160 170 180
160 170 180 190 200 210
pF1KE5 EEFGANATVETPAAEETMNTSPGTPAPAAEETMNTSPGTPAPAAEETMTTSPGTPAPAAE
.: :.. . :.::.:::...::::::
CCDS60 KESGTKHSGEVPAVEETVTSSPGTPASPCSLSGIIIGVTVAAVVLIVAVFVCKSLLWKKV
190 200 210 220 230 240
>>CCDS6036.1 TNFRSF10B gene_id:8795|Hs108|chr8 (411 aa)
initn: 497 init1: 403 opt: 523 Z-score: 352.9 bits: 73.6 E(32554): 2.5e-13
Smith-Waterman score: 523; 38.2% identity (59.8% similar) in 246 aa overlap (3-242:33-275)
10 20 30
pF1KE5 MARIPKTLKFVVVIVAVLLPVLAYSATTARQE
:.:::: :.:..:::: : : :: ..:.
CCDS60 QRGQNAPAASGARKRHGPGPREARGARPGPRVPKTL--VLVVAAVLLLVSAESALITQQD
10 20 30 40 50 60
40 50 60 70 80 90
pF1KE5 EVPQQTVAPQQQRHSFKGEECPAGSHRSEHTGACNPCTEGVDYTNASNNEPSCFPCTVCK
.::: .::::.: : . :: : : :: : : : ::.. :. :. :: :
CCDS60 LAPQQRAAPQQKRSSPSEGLCPPGHHISEDGRDCISCKYGQDYSTHWNDLLFCLRCTRCD
70 80 90 100 110 120
100 110 120 130 140 150
pF1KE5 SDQKHKSSCTMTRDTVCQCKEGTFRNENSPEMCRKC-SRCPSGEVQVSNCTSWDDIQCVE
: . . : :: ::.:::::.:::::.:.:::::::: . :: : :.:..:: :.::.::.
CCDS60 SGEVELSPCTTTRNTVCQCEEGTFREEDSPEMCRKCRTGCPRGMVKVGDCTPWSDIECVH
130 140 150 160 170 180
160 170 180 190 200
pF1KE5 EFGANATVETPAAEETMNTSPGTPAPAAEETMN-----TSPGTPAPAAEETMTTSPGTPA
. .. : :: . . . .... : : : . . ::.
CCDS60 KESGIIIGVTVAAVVLIVAVFVCKSLLWKKVLPYLKGICSGGGGDPERVDRSSQRPGAED
190 200 210 220 230 240
210 220 230 240 250
pF1KE5 PAAEETMTTSPGTPAPAAEETMTTSPGTPASSHYLSCTIVGIIVLIVLLIVFV
. .: .. : .: .: . :. :.. ..::
CCDS60 NVLNEIVSILQPTQVPE-QEMEVQEPAEPTGVNMLSPGESEHLLEPAEAERSQRRRLLVP
250 260 270 280 290
CCDS60 ANEGDPTETLRQCFDDFADLVPFDSWEPLMRKLGLMDNEIKVAKAEAAGHRDTLYTMLIK
300 310 320 330 340 350
259 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 23:54:15 2016 done: Mon Nov 7 23:54:15 2016
Total Scan time: 2.240 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]