FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5334, 261 aa
  1>>>pF1KE5334 261 - 261 aa - 261 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.4173+/-0.000883; mu= 13.9580+/- 0.053
 mean_var=63.4360+/-12.784, 0's: 0 Z-trim(105.5): 11  B-trim: 0 in 0/50
 Lambda= 0.161030
 statistics sampled from 8441 (8445) to 8441 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.642), E-opt: 0.2 (0.259), width:  16
 Scan time:  2.050

The best scores are:                                      opt bits E(32554)
CCDS35345.1 RPA4 gene_id:29935|Hs108|chrX          ( 261) 1717 407.5 4.8e-114
CCDS314.1 RPA2 gene_id:6118|Hs108|chr1             ( 270)  708 173.1 1.8e-43
CCDS72740.1 RPA2 gene_id:6118|Hs108|chr1           ( 278)  701 171.5 5.8e-43


>>CCDS35345.1 RPA4 gene_id:29935|Hs108|chrX               (261 aa)
 initn: 1717 init1: 1717 opt: 1717  Z-score: 2160.9  bits: 407.5 E(32554): 4.8e-114
Smith-Waterman score: 1717; 100.0% identity (100.0% similar) in 261 aa overlap (1-261:1-261)

               10        20        30        40        50        60
pF1KE5 MSKSGFGSYGSISAADGASGGSDQLCERDATPAIKTQRPKVRIQDVVPCNVNQLLSSTVF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 MSKSGFGSYGSISAADGASGGSDQLCERDATPAIKTQRPKVRIQDVVPCNVNQLLSSTVF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 DPVFKVRGIIVSQVSIVGVIRGAEKASNHICYKIDDMTAKPIEARQWFGREKVKQVTPLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 DPVFKVRGIIVSQVSIVGVIRGAEKASNHICYKIDDMTAKPIEARQWFGREKVKQVTPLS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 VGVYVKVFGILKCPTGTKSLEVLKIHVLEDMNEFTVHILETVNAHMMLDKARRDTTVESV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 VGVYVKVFGILKCPTGTKSLEVLKIHVLEDMNEFTVHILETVNAHMMLDKARRDTTVESV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE5 PVSPSEVNDAGDNDESHRNFIQDEVLRLIHECPHQEGKSIHELRAQLCDLSVKAIKEAID
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 PVSPSEVNDAGDNDESHRNFIQDEVLRLIHECPHQEGKSIHELRAQLCDLSVKAIKEAID
              190       200       210       220       230       240

              250       260 
pF1KE5 YLTVEGHIYPTVDREHFKSAD
       :::::::::::::::::::::
CCDS35 YLTVEGHIYPTVDREHFKSAD
              250       260 

>>CCDS314.1 RPA2 gene_id:6118|Hs108|chr1                  (270 aa)
 initn: 702 init1: 315 opt: 708  Z-score: 893.8  bits: 173.1 E(32554): 1.8e-43
Smith-Waterman score: 708; 45.9% identity (72.2% similar) in 270 aa overlap (1-261:1-268)

               10        20        30          40        50        
pF1KE5 MSKSGFGSYGSISAADGASGGSDQLCERDATPAIKT--QRPKVRIQDVVPCNVNQLLSST
       : .::: :::: :   :..::  :     ..:: .   .. ..: : .:::...::::.:
CCDS31 MWNSGFESYGSSSY--GGAGGYTQSPGGFGSPAPSQAEKKSRARAQHIVPCTISQLLSAT
               10          20        30        40        50        

       60        70        80        90       100       110        
pF1KE5 VFDPVFKVRGIIVSQVSIVGVIRGAEKASNHICYKIDDMTAKPIEARQWFGREKVK-QVT
       . : ::.. .. .:::.:::.:: :::: ..: :::::::: :...:::   . .. . :
CCDS31 LVDEVFRIGNVEISQVTIVGIIRHAEKAPTNIVYKIDDMTAAPMDVRQWVDTDDTSSENT
       60        70        80        90       100       110        

       120       130       140       150       160       170       
pF1KE5 PLSVGVYVKVFGILKCPTGTKSLEVLKIHVLEDMNEFTVHILETVNAHMMLDKARRDTTV
        .   .:::: : :.   . ::: ..::  ::::::::.::::..::::.:.::  . ..
CCDS31 VVPPETYVKVAGHLRSFQNKKSLVAFKIMPLEDMNEFTTHILEVINAHMVLSKANSQPSA
      120       130       140       150       160       170        

       180          190       200          210       220       230 
pF1KE5 ESVPVS-P--SEVNDAGDNDESHRNFI---QDEVLRLIHECPHQEGKSIHELRAQLCDLS
         .:.: :  ::... : :.    : .   :..:: ::. ::. :: ....:. ::  .:
CCDS31 GRAPISNPGMSEAGNFGGNSFMPANGLTVAQNQVLNLIKACPRPEGLNFQDLKNQLKHMS
      180       190       200       210       220       230        

             240       250       260   
pF1KE5 VKAIKEAIDYLTVEGHIYPTVDREHFKSAD  
       :..::.:.:.:. ::::: ::: .::::.:  
CCDS31 VSSIKQAVDFLSNEGHIYSTVDDDHFKSTDAE
      240       250       260       270

>>CCDS72740.1 RPA2 gene_id:6118|Hs108|chr1                (278 aa)
 initn: 695 init1: 308 opt: 701  Z-score: 884.9  bits: 171.5 E(32554): 5.8e-43
Smith-Waterman score: 701; 45.7% identity (71.7% similar) in 269 aa overlap (2-261:10-276)

                       10        20        30          40        50
pF1KE5         MSKSGFGSYGSISAADGASGGSDQLCERDATPAIKT--QRPKVRIQDVVPCN
                :  :: :::: :   :..::  :     ..:: .   .. ..: : .:::.
CCDS72 MGRGDRNKRSIRGFESYGSSSY--GGAGGYTQSPGGFGSPAPSQAEKKSRARAQHIVPCT
               10        20          30        40        50        

               60        70        80        90       100       110
pF1KE5 VNQLLSSTVFDPVFKVRGIIVSQVSIVGVIRGAEKASNHICYKIDDMTAKPIEARQWFGR
       ..::::.:. : ::.. .. .:::.:::.:: :::: ..: :::::::: :...:::   
CCDS72 ISQLLSATLVDEVFRIGNVEISQVTIVGIIRHAEKAPTNIVYKIDDMTAAPMDVRQWVDT
       60        70        80        90       100       110        

               120       130       140       150       160         
pF1KE5 EKVK-QVTPLSVGVYVKVFGILKCPTGTKSLEVLKIHVLEDMNEFTVHILETVNAHMMLD
       . .. . : .   .:::: : :.   . ::: ..::  ::::::::.::::..::::.:.
CCDS72 DDTSSENTVVPPETYVKVAGHLRSFQNKKSLVAFKIMPLEDMNEFTTHILEVINAHMVLS
      120       130       140       150       160       170        

     170       180          190       200          210       220   
pF1KE5 KARRDTTVESVPVS-P--SEVNDAGDNDESHRNFI---QDEVLRLIHECPHQEGKSIHEL
       ::  . ..  .:.: :  ::... : :.    : .   :..:: ::. ::. :: ....:
CCDS72 KANSQPSAGRAPISNPGMSEAGNFGGNSFMPANGLTVAQNQVLNLIKACPRPEGLNFQDL
      180       190       200       210       220       230        

           230       240       250       260   
pF1KE5 RAQLCDLSVKAIKEAIDYLTVEGHIYPTVDREHFKSAD  
       . ::  .::..::.:.:.:. ::::: ::: .::::.:  
CCDS72 KNQLKHMSVSSIKQAVDFLSNEGHIYSTVDDDHFKSTDAE
      240       250       260       270        




261 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 23:52:38 2016 done: Mon Nov  7 23:52:38 2016
 Total Scan time:  2.050 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]