Result of FASTA (ccds) for
pFN21AE5333
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE5333, 275 aa
1>>>pF1KE5333 275 - 275 aa - 275 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.0907+/-0.000848; mu= 16.2963+/- 0.051
mean_var=65.9955+/-13.205, 0's: 0 Z-trim(106.2): 45 B-trim: 2 in 1/49
Lambda= 0.157876
statistics sampled from 8795 (8830) to 8795 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.657), E-opt: 0.2 (0.271), width: 16
Scan time: 2.380
The best scores are: opt bits E(32554)
CCDS12868.1 CACNG7 gene_id:59284|Hs108|chr19 ( 275) 1840 427.8 4.1e-120
CCDS11665.1 CACNG5 gene_id:27091|Hs108|chr17 ( 275) 1384 323.9 7.6e-89
CCDS11667.1 CACNG4 gene_id:27092|Hs108|chr17 ( 327) 409 101.9 6.2e-22
CCDS13931.1 CACNG2 gene_id:10369|Hs108|chr22 ( 323) 387 96.9 2e-20
CCDS10620.1 CACNG3 gene_id:10368|Hs108|chr16 ( 315) 374 93.9 1.5e-19
CCDS33104.1 CACNG8 gene_id:59283|Hs108|chr19 ( 425) 322 82.2 7e-16
>>CCDS12868.1 CACNG7 gene_id:59284|Hs108|chr19 (275 aa)
initn: 1840 init1: 1840 opt: 1840 Z-score: 2269.9 bits: 427.8 E(32554): 4.1e-120
Smith-Waterman score: 1840; 100.0% identity (100.0% similar) in 275 aa overlap (1-275:1-275)
10 20 30 40 50 60
pF1KE5 MSHCSSRALTLLSSVFGACGLLLVGIAVSTDYWLYMEEGTVLPQNQTTEVKMALHAGLWR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MSHCSSRALTLLSSVFGACGLLLVGIAVSTDYWLYMEEGTVLPQNQTTEVKMALHAGLWR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 VCFFAGREKGRCVASEYFLEPEINLVTENTENILKTVRTATPFPMVSLFLVFTAFVISNI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 VCFFAGREKGRCVASEYFLEPEINLVTENTENILKTVRTATPFPMVSLFLVFTAFVISNI
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE5 GHIRPQRTILAFVSGIFFILSGLSLVVGLVLYISSINDEVMNRPSSSEQYFHYRYGWSFA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 GHIRPQRTILAFVSGIFFILSGLSLVVGLVLYISSINDEVMNRPSSSEQYFHYRYGWSFA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE5 FAASSFLLKEGAGVMSVYLFTKRYAEEEMYRPHPAFYRPRLSDCSDYSGQFLQPEAWRRG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 FAASSFLLKEGAGVMSVYLFTKRYAEEEMYRPHPAFYRPRLSDCSDYSGQFLQPEAWRRG
190 200 210 220 230 240
250 260 270
pF1KE5 RSPSDISSDVSIQMTQNYPPAIKYPDHLHISTSPC
:::::::::::::::::::::::::::::::::::
CCDS12 RSPSDISSDVSIQMTQNYPPAIKYPDHLHISTSPC
250 260 270
>>CCDS11665.1 CACNG5 gene_id:27091|Hs108|chr17 (275 aa)
initn: 1384 init1: 1384 opt: 1384 Z-score: 1708.6 bits: 323.9 E(32554): 7.6e-89
Smith-Waterman score: 1384; 70.5% identity (91.6% similar) in 275 aa overlap (1-275:1-275)
10 20 30 40 50 60
pF1KE5 MSHCSSRALTLLSSVFGACGLLLVGIAVSTDYWLYMEEGTVLPQNQTTEVKMALHAGLWR
:: :. .:::::::::..::: :.:::::::::::.:::...::::.::.::.::.::::
CCDS11 MSACGRKALTLLSSVFAVCGLGLLGIAVSTDYWLYLEEGVIVPQNQSTEIKMSLHSGLWR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 VCFFAGREKGRCVASEYFLEPEINLVTENTENILKTVRTATPFPMVSLFLVFTAFVISNI
:::.::.:.::: . :: . . .:..:.: :.:: .:.:::::.::::..: .:...::
CCDS11 VCFLAGEERGRCFTIEYVMPMNTQLTSESTVNVLKMIRSATPFPLVSLFFMFIGFILNNI
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE5 GHIRPQRTILAFVSGIFFILSGLSLVVGLVLYISSINDEVMNRPSSSEQYFHYRYGWSFA
:::::.:::::::::::::::::::::::::::::::::..:: ...: ::.:.::::::
CCDS11 GHIRPHRTILAFVSGIFFILSGLSLVVGLVLYISSINDEMLNRTKDAETYFNYKYGWSFA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE5 FAASSFLLKEGAGVMSVYLFTKRYAEEEMYRPHPAFYRPRLSDCSDYSGQFLQPEAWRRG
::: :::: :.::::::::: :::. :.::::::.:::::::.:::::::::.:.:: ::
CCDS11 FAAISFLLTESAGVMSVYLFMKRYTAEDMYRPHPGFYRPRLSNCSDYSGQFLHPDAWVRG
190 200 210 220 230 240
250 260 270
pF1KE5 RSPSDISSDVSIQMTQNYPPAIKYPDHLHISTSPC
::::::::..:.::..::: .: ::. ..:.:::
CCDS11 RSPSDISSEASLQMNSNYPALLKCPDYDQMSSSPC
250 260 270
>>CCDS11667.1 CACNG4 gene_id:27092|Hs108|chr17 (327 aa)
initn: 381 init1: 151 opt: 409 Z-score: 507.3 bits: 101.9 E(32554): 6.2e-22
Smith-Waterman score: 409; 31.9% identity (64.2% similar) in 254 aa overlap (1-244:1-247)
10 20 30 40 50
pF1KE5 MSHCSSRALTLLSSVFGACGLL-LVGIAVSTDYWLY----MEEGTVLPQNQTTEVKMA--
: .:. :.: .: .. :: . . :..::..:::::: . .:: : ... . :
CCDS11 MVRCD-RGLQMLLTTAGAFAAFSLMAIAIGTDYWLYSSAHICNGTNLTMDDGPPPRRARG
10 20 30 40 50
60 70 80 90 100 110
pF1KE5 --LHAGLWRVCFFAGREKGRCVASEYFLEPEINLVT-ENTENILKTVRTATPFPMVSLFL
:.:::::: . : ::.: ..: :: : ...: .:. ::... ::..: .:
CCDS11 DLTHSGLWRVCCIEGIYKGHCFRINHF--PEDNDYDHDSSEYLLRIVRASSVFPILSTIL
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE5 VFTAFVISNIGHIRPQRTILAFVSGIFFILSGLSLVVGLVLYISSINDEVMNRPSSSEQY
.. . . . :.: ... ... .::.:. .::: ..:...:::: . . .. . ...
CCDS11 LLLGGLCIGAGRIYSRKNNIVLSAGILFVAAGLSNIIGIIVYISSNTGDPSDKRDEDKKN
120 130 140 150 160 170
180 190 200 210 220 230
pF1KE5 FHYRYGWSFAFAASSFLLKEGAGVMSVYLFTKRYAEEEMYRPHPAFYRPRLSDCSDYSGQ
:: ::::: :.: ::.. : .::..: .. .. .: .. . : . :. : :. .
CCDS11 -HYNYGWSFYFGALSFIVAETVGVLAVNIYIEK-NKELRFKTKREFLKA--SSSSPYARM
180 190 200 210 220 230
240 250 260 270
pF1KE5 FLQPEAWRRGRSPSDISSDVSIQMTQNYPPAIKYPDHLHISTSPC
::.:: :
CCDS11 PSYRYRRRRSRSSSRSTEASPSRDVSPMGLKITGAIPMGELSMYTLSREPLKVTTAASYS
240 250 260 270 280 290
>>CCDS13931.1 CACNG2 gene_id:10369|Hs108|chr22 (323 aa)
initn: 359 init1: 129 opt: 387 Z-score: 480.3 bits: 96.9 E(32554): 2e-20
Smith-Waterman score: 387; 30.1% identity (60.8% similar) in 286 aa overlap (7-274:6-284)
10 20 30 40 50
pF1KE5 MSHCSSRALTLLSSVFGACGLL-LVGIAVSTDYWLYME---EGTVLPQNQTTEV--KMAL
:.. .: .. :: . . :. :::.:::::: . . . .:.:.. ..
CCDS13 MGLFDRGVQMLLTTVGAFAAFSLMTIAVGTDYWLYSRGVCKTKSVSENETSKKNEEVMT
10 20 30 40 50
60 70 80 90 100 110
pF1KE5 HAGLWRVCFFAGREKGRCVASEYFLEPEINLVTENTENILKTVRTATPFPMVSLFLVFTA
:.::::.: . : :: : ..: : . . ....: .:..::... ::..:..:.: .
CCDS13 HSGLWRTCCLEGNFKGLCKQIDHFPE-DADYEADTAEYFLRAVRASSIFPILSVILLFMG
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE5 FVISNIGHIRPQRTILAFVSGIFFILSGLSLVVGLVLYISSINDEVMNRPSSSEQYFH-Y
. ... : . . .::::. .::: ..:...:::. . ::.:.. . :
CCDS13 GLCIAASEFYKTRHNIILSAGIFFVSAGLSNIIGIIVYISANAGD----PSKSDSKKNSY
120 130 140 150 160 170
180 190 200 210 220
pF1KE5 RYGWSFAFAASSFLLKEGAGVMSVYLFTKRY------AEEEMYRPHPAF-----YRPRLS
::::: :.: ::.. : .::..:..: :. :. : :. :: : .
CCDS13 SYGWSFYFGALSFIIAEMVGVLAVHMFIDRHKQLRATARATDYLQASAITRIPSYRYRYQ
180 190 200 210 220 230
230 240 250 260 270
pF1KE5 DCSDYSGQFLQPEAWRRGRSPSDISSDVSIQMTQNYPPAIKYPDHLHISTSPC
: :.. .: . : :: :.. .. :. ... : :. .:.:
CCDS13 RRSRSSSRSTEP-SHSRDASPVGIKGFNTLPSTEISMYTLSR-DPLKAATTPTATYNSDR
240 250 260 270 280 290
CCDS13 DNSFLQVHNCIQKENKDSLHSNTANRRTTPV
300 310 320
>>CCDS10620.1 CACNG3 gene_id:10368|Hs108|chr16 (315 aa)
initn: 331 init1: 147 opt: 374 Z-score: 464.4 bits: 93.9 E(32554): 1.5e-19
Smith-Waterman score: 374; 29.9% identity (64.7% similar) in 224 aa overlap (1-218:1-217)
10 20 30 40 50
pF1KE5 MSHCSSRALTLLSSVFGACGLL-LVGIAVSTDYWLYME---EGTVLPQNQTTEV--KMAL
: :. :.. .: .. :: . . :. :::.:::::: . . .:.:.. ..
CCDS10 MRMCD-RGIQMLITTVGAFAAFSLMTIAVGTDYWLYSRGVCRTKSTSDNETSRKNEEVMT
10 20 30 40 50
60 70 80 90 100 110
pF1KE5 HAGLWRVCFFAGREKGRCVASEYFLEPEINLVTENTENILKTVRTATPFPMVSLFLVFTA
:.::::.: . : .: : ..: : . . ...: .:..::... ::..:. :.: .
CCDS10 HSGLWRTCCLEGAFRGVCKKIDHFPE-DADYEQDTAEYLLRAVRASSVFPILSVTLLFFG
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE5 FVISNIGHIRPQRTILAFVSGIFFILSGLSLVVGLVLYISSINDEVMNRPSSSEQYFHYR
. .... .: . . .::::. .::: ..:...:::. . :.. .. :
CCDS10 GLCVAASEFHRSRHNVILSAGIFFVSAGLSNIIGIIVYISANAGD----PGQRDSKKSYS
120 130 140 150 160 170
180 190 200 210 220 230
pF1KE5 YGWSFAFAASSFLLKEGAGVMSVYLFTKRYAEEEMYRPHPAFYRPRLSDCSDYSGQFLQP
::::: :.: ::.. : .::..:... ... .. . : : .
CCDS10 YGWSFYFGAFSFIIAEIVGVVAVHIYIEKH-QQLRAKSHSEFLKKSTFARLPPYRYRFRR
180 190 200 210 220 230
240 250 260 270
pF1KE5 EAWRRGRSPSDISSDVSIQMTQNYPPAIKYPDHLHISTSPC
CCDS10 RSSSRSTEPRSRDLSPISKGFHTIPSTDISMFTLSRDPSKITMGTLLNSDRDHAFLQFHN
240 250 260 270 280 290
>>CCDS33104.1 CACNG8 gene_id:59283|Hs108|chr19 (425 aa)
initn: 391 init1: 119 opt: 322 Z-score: 398.6 bits: 82.2 E(32554): 7e-16
Smith-Waterman score: 360; 32.0% identity (61.3% similar) in 225 aa overlap (4-206:15-233)
10 20 30
pF1KE5 MSHCSSRALTLLSSV--FGACGLLLVGIAVSTDYWLYM-----------
: . . .::..: :.: ::. ::.:::::::
CCDS33 MESLKRWNEERGLWCEKGVQVLLTTVGAFAAFGLMT--IAISTDYWLYTRALICNTTNLT
10 20 30 40 50
40 50 60 70 80
pF1KE5 ---EEGTVLPQ---NQTTEVKMA---LHAGLWRVCFFAGREKGRCVASEYFLEPEINLVT
..:: :. . ..: : :.::::.: . : ..: :: ..: : . .
CCDS33 AGGDDGT--PHRGGGGASEKKDPGGLTHSGLWRICCLEGLKRGVCVKINHFPE-DTDYDH
60 70 80 90 100 110
90 100 110 120 130 140
pF1KE5 ENTENILKTVRTATPFPMVSLFLVFTAFVISNIGHIRPQRTILAFVSGIFFILSGLSLVV
...: .:..::... ::..: .:.. . : ... .. . . .::.:. .::: ..
CCDS33 DSAEYLLRVVRASSIFPILSAILLLLGGVCVAASRVYKSKRNIILGAGILFVAAGLSNII
120 130 140 150 160 170
150 160 170 180 190 200
pF1KE5 GLVLYISSINDEVMNRPSSSEQYFHYRYGWSFAFAASSFLLKEGAGVMSVYLFTKRYAEE
:...:::. : . . :. :: ::::: :.. ::.: : ::..: .. .: :
CCDS33 GVIVYISANAGEPGPK-RDEEKKNHYSYGWSFYFGGLSFILAEVIGVLAVNIYIERSREA
180 190 200 210 220 230
210 220 230 240 250 260
pF1KE5 EMYRPHPAFYRPRLSDCSDYSGQFLQPEAWRRGRSPSDISSDVSIQMTQNYPPAIKYPDH
CCDS33 HCQSRSDLLKAGGGAGGSGGSGPSAILRLPSYRFRYRRRSRSSSRSSEPSPSRDASPGGP
240 250 260 270 280 290
275 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 23:52:03 2016 done: Mon Nov 7 23:52:03 2016
Total Scan time: 2.380 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]