FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5323, 283 aa
  1>>>pF1KE5323 283 - 283 aa - 283 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.5944+/-0.000917; mu= 6.5858+/- 0.055
 mean_var=204.1737+/-42.547, 0's: 0 Z-trim(112.9): 109  B-trim: 778 in 1/51
 Lambda= 0.089758
 statistics sampled from 13447 (13571) to 13447 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.755), E-opt: 0.2 (0.417), width:  16
 Scan time:  2.640

The best scores are:                                      opt bits E(32554)
CCDS2325.1 BOLL gene_id:66037|Hs108|chr2           ( 283) 1946 264.0   9e-71
CCDS2324.1 BOLL gene_id:66037|Hs108|chr2           ( 295) 1946 264.0 9.2e-71
CCDS63081.1 BOLL gene_id:66037|Hs108|chr2          ( 174) 1171 163.4   1e-40


>>CCDS2325.1 BOLL gene_id:66037|Hs108|chr2                (283 aa)
 initn: 1946 init1: 1946 opt: 1946  Z-score: 1384.1  bits: 264.0 E(32554): 9e-71
Smith-Waterman score: 1946; 100.0% identity (100.0% similar) in 283 aa overlap (1-283:1-283)

               10        20        30        40        50        60
pF1KE5 MQTDSLSPSPNPVSPVPLNNPTSAPRYGTVIPNRIFVGGIDFKTNESDLRKFFSQYGSVK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS23 MQTDSLSPSPNPVSPVPLNNPTSAPRYGTVIPNRIFVGGIDFKTNESDLRKFFSQYGSVK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 EVKIVNDRAGVSKGYGFVTFETQEDAQKILQEAEKLNYKDKKLNIGPAIRKQQVGIPRSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS23 EVKIVNDRAGVSKGYGFVTFETQEDAQKILQEAEKLNYKDKKLNIGPAIRKQQVGIPRSS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 IMPAAGTMYLTTSTGYPYTYHNGVAYFHTPEVTSVPPPWPSRSVCSSPVMVAQPIYQQPA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS23 IMPAAGTMYLTTSTGYPYTYHNGVAYFHTPEVTSVPPPWPSRSVCSSPVMVAQPIYQQPA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE5 YHYQATTQYLPGQWQWSVPQPSASSAPFLYLQPSEVIYQPVEIAQDGGCVPPPLSLMETS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS23 YHYQATTQYLPGQWQWSVPQPSASSAPFLYLQPSEVIYQPVEIAQDGGCVPPPLSLMETS
              190       200       210       220       230       240

              250       260       270       280   
pF1KE5 VPEPYSDHGVQATYHQVYAPSAITMPAPVMQPEPIKTVWSIHY
       :::::::::::::::::::::::::::::::::::::::::::
CCDS23 VPEPYSDHGVQATYHQVYAPSAITMPAPVMQPEPIKTVWSIHY
              250       260       270       280   

>>CCDS2324.1 BOLL gene_id:66037|Hs108|chr2                (295 aa)
 initn: 1946 init1: 1946 opt: 1946  Z-score: 1383.9  bits: 264.0 E(32554): 9.2e-71
Smith-Waterman score: 1946; 100.0% identity (100.0% similar) in 283 aa overlap (1-283:13-295)

                           10        20        30        40        
pF1KE5             MQTDSLSPSPNPVSPVPLNNPTSAPRYGTVIPNRIFVGGIDFKTNESD
                   ::::::::::::::::::::::::::::::::::::::::::::::::
CCDS23 METESGPQTSNQMQTDSLSPSPNPVSPVPLNNPTSAPRYGTVIPNRIFVGGIDFKTNESD
               10        20        30        40        50        60

       50        60        70        80        90       100        
pF1KE5 LRKFFSQYGSVKEVKIVNDRAGVSKGYGFVTFETQEDAQKILQEAEKLNYKDKKLNIGPA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS23 LRKFFSQYGSVKEVKIVNDRAGVSKGYGFVTFETQEDAQKILQEAEKLNYKDKKLNIGPA
               70        80        90       100       110       120

      110       120       130       140       150       160        
pF1KE5 IRKQQVGIPRSSIMPAAGTMYLTTSTGYPYTYHNGVAYFHTPEVTSVPPPWPSRSVCSSP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS23 IRKQQVGIPRSSIMPAAGTMYLTTSTGYPYTYHNGVAYFHTPEVTSVPPPWPSRSVCSSP
              130       140       150       160       170       180

      170       180       190       200       210       220        
pF1KE5 VMVAQPIYQQPAYHYQATTQYLPGQWQWSVPQPSASSAPFLYLQPSEVIYQPVEIAQDGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS23 VMVAQPIYQQPAYHYQATTQYLPGQWQWSVPQPSASSAPFLYLQPSEVIYQPVEIAQDGG
              190       200       210       220       230       240

      230       240       250       260       270       280   
pF1KE5 CVPPPLSLMETSVPEPYSDHGVQATYHQVYAPSAITMPAPVMQPEPIKTVWSIHY
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS23 CVPPPLSLMETSVPEPYSDHGVQATYHQVYAPSAITMPAPVMQPEPIKTVWSIHY
              250       260       270       280       290     

>>CCDS63081.1 BOLL gene_id:66037|Hs108|chr2               (174 aa)
 initn: 1170 init1: 1170 opt: 1171  Z-score: 844.3  bits: 163.4 E(32554): 1e-40
Smith-Waterman score: 1171; 98.8% identity (99.4% similar) in 168 aa overlap (117-283:7-174)

         90       100       110        120       130       140     
pF1KE5 QKILQEAEKLNYKDKKLNIGPAIRKQQVGIPR-SSIMPAAGTMYLTTSTGYPYTYHNGVA
                                     :. :::::::::::::::::::::::::::
CCDS63                         MTELEYPKGSSIMPAAGTMYLTTSTGYPYTYHNGVA
                                       10        20        30      

         150       160       170       180       190       200     
pF1KE5 YFHTPEVTSVPPPWPSRSVCSSPVMVAQPIYQQPAYHYQATTQYLPGQWQWSVPQPSASS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 YFHTPEVTSVPPPWPSRSVCSSPVMVAQPIYQQPAYHYQATTQYLPGQWQWSVPQPSASS
         40        50        60        70        80        90      

         210       220       230       240       250       260     
pF1KE5 APFLYLQPSEVIYQPVEIAQDGGCVPPPLSLMETSVPEPYSDHGVQATYHQVYAPSAITM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 APFLYLQPSEVIYQPVEIAQDGGCVPPPLSLMETSVPEPYSDHGVQATYHQVYAPSAITM
        100       110       120       130       140       150      

         270       280   
pF1KE5 PAPVMQPEPIKTVWSIHY
       ::::::::::::::::::
CCDS63 PAPVMQPEPIKTVWSIHY
        160       170    




283 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 07:32:27 2016 done: Tue Nov  8 07:32:28 2016
 Total Scan time:  2.640 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]