FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5320, 291 aa
  1>>>pF1KE5320 291 - 291 aa - 291 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3037+/-0.000866; mu= 14.4805+/- 0.052
 mean_var=56.4539+/-11.475, 0's: 0 Z-trim(105.0): 17  B-trim: 33 in 1/48
 Lambda= 0.170698
 statistics sampled from 8174 (8178) to 8174 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.627), E-opt: 0.2 (0.251), width:  16
 Scan time:  1.840

The best scores are:                                      opt bits E(32554)
CCDS6768.1 TMEM38B gene_id:55151|Hs108|chr9        ( 291) 1975 494.6 3.6e-140
CCDS12349.1 TMEM38A gene_id:79041|Hs108|chr19      ( 299)  836 214.1   1e-55


>>CCDS6768.1 TMEM38B gene_id:55151|Hs108|chr9             (291 aa)
 initn: 1975 init1: 1975 opt: 1975  Z-score: 2630.0  bits: 494.6 E(32554): 3.6e-140
Smith-Waterman score: 1975; 100.0% identity (100.0% similar) in 291 aa overlap (1-291:1-291)

               10        20        30        40        50        60
pF1KE5 MDSPWDELALAFSRTSMFPFFDIAHYLVSVMAVKRQPGAAALAWKNPISSWFTAMLHCFG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS67 MDSPWDELALAFSRTSMFPFFDIAHYLVSVMAVKRQPGAAALAWKNPISSWFTAMLHCFG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 GGILSCLLLAEPPLKFLANHTNILLASSIWYITFFCPHDLVSQGYSYLPVQLLASGMKEV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS67 GGILSCLLLAEPPLKFLANHTNILLASSIWYITFFCPHDLVSQGYSYLPVQLLASGMKEV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 TRTWKIVGGVTHANSYYKNGWIVMIAIGWARGAGGTIITNFERLVKGDWKPEGDEWLKMS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS67 TRTWKIVGGVTHANSYYKNGWIVMIAIGWARGAGGTIITNFERLVKGDWKPEGDEWLKMS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE5 YPAKVTLLGSVIFTFQHTQHLAISKHNLMFLYTIFIVATKITMMTTQTSTMTFAPFEDTL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS67 YPAKVTLLGSVIFTFQHTQHLAISKHNLMFLYTIFIVATKITMMTTQTSTMTFAPFEDTL
              190       200       210       220       230       240

              250       260       270       280       290 
pF1KE5 SWMLFGWQQPFSSCEKKSEAKSPSNGVGSLASKPVDVASDNVKKKHTKKNE
       :::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS67 SWMLFGWQQPFSSCEKKSEAKSPSNGVGSLASKPVDVASDNVKKKHTKKNE
              250       260       270       280       290 

>>CCDS12349.1 TMEM38A gene_id:79041|Hs108|chr19           (299 aa)
 initn: 829 init1: 829 opt: 836  Z-score: 1113.9  bits: 214.1 E(32554): 1e-55
Smith-Waterman score: 836; 41.2% identity (76.2% similar) in 294 aa overlap (7-291:11-299)

                   10        20        30        40        50      
pF1KE5     MDSPWDELALAFSRTSMFPFFDIAHYLVSVMAVKRQPGAAALAWKNPISSWFTAML
                 ::::.:::. .:: ::.....::.. .: .:::. :. ..::.::. :::
CCDS12 MELLSALSLGELALSFSRVPLFPVFDLSYFIVSILYLKYEPGAVELSRRHPIASWLCAML
               10        20        30        40        50        60

         60        70        80        90       100       110      
pF1KE5 HCFGGGILSCLLLAEPPLKFLANHTNILLASSIWYITFFCPHDLVSQGYSYLPVQLLASG
       ::::. ::. :::.:: . ...:...:::::..::. :::: ::  .   .:::.:.  .
CCDS12 HCFGSYILADLLLGEPLIDYFSNNSSILLASAVWYLIFFCPLDLFYKCVCFLPVKLIFVA
               70        80        90       100       110       120

        120       130       140       150       160       170      
pF1KE5 MKEVTRTWKIVGGVTHANSYYKNGWIVMIAIGWARGAGGTIITNFERLVKGDWKPEGDEW
       ::::.:. ::. :. ::. .:..::.:::: ::..:.: ....:::.:..: :::: .: 
CCDS12 MKEVVRVRKIAVGIHHAHHHYHHGWFVMIATGWVKGSGVALMSNFEQLLRGVWKPETNEI
              130       140       150       160       170       180

        180       190       200       210       220       230      
pF1KE5 LKMSYPAKVTLLGSVIFTFQHTQHLAISKHNLMFLYTIFIVATKITMMTTQTSTMTFAPF
       :.::.:.:..: :...::.:.:. : .:: .:.:..:.:.:. :. . .:.. .  :  .
CCDS12 LHMSFPTKASLYGAILFTLQQTRWLPVSKASLIFIFTLFMVSCKVFLTATHSHSSPFDAL
              190       200       210       220       230       240

        240       250         260              270       280       
pF1KE5 EDTLSWMLFGWQQPFSSC--EKKSEAKSPSNGVG-------SLASKPVDVASDNVKKKHT
       :  .  .:::     :.:  ... . .. :.. :       .. .:  .  :.. .::..
CCDS12 EGYICPVLFG-----SACGGDHHHDNHGGSHSGGGPGAQHSAMPAKSKEELSEGSRKKKA
              250            260       270       280       290     

       290 
pF1KE5 KKNE
       :: .
CCDS12 KKAD
           




291 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 07:31:47 2016 done: Tue Nov  8 07:31:47 2016
 Total Scan time:  1.840 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]