FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5317, 289 aa
  1>>>pF1KE5317 289 - 289 aa - 289 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.0256+/-0.00029; mu= 4.2969+/- 0.018
 mean_var=146.5492+/-30.321, 0's: 0 Z-trim(122.9): 36  B-trim: 1350 in 1/56
 Lambda= 0.105945
 statistics sampled from 41687 (41735) to 41687 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.799), E-opt: 0.2 (0.489), width:  16
 Scan time:  6.580

The best scores are:                                      opt bits E(85289)
NP_071915 (OMIM: 606452) zinc finger matrin-type p ( 289) 1992 315.1   1e-85
XP_011511375 (OMIM: 606452) PREDICTED: zinc finger ( 289) 1992 315.1   1e-85
NP_689426 (OMIM: 606452) zinc finger matrin-type p ( 288) 1975 312.5 6.1e-85
XP_005247763 (OMIM: 606452) PREDICTED: zinc finger ( 288) 1975 312.5 6.1e-85


>>NP_071915 (OMIM: 606452) zinc finger matrin-type prote  (289 aa)
 initn: 1992 init1: 1992 opt: 1992  Z-score: 1660.0  bits: 315.1 E(85289): 1e-85
Smith-Waterman score: 1992; 100.0% identity (100.0% similar) in 289 aa overlap (1-289:1-289)

               10        20        30        40        50        60
pF1KE5 MILLQHAVLPPPKQPSPSPPMSVATRSTGTLQLPPQKPFGQEASLPLAGEEELSKGGEQD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_071 MILLQHAVLPPPKQPSPSPPMSVATRSTGTLQLPPQKPFGQEASLPLAGEEELSKGGEQD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 CALEELCKPLYCKLCNVTLNSAQQAQAHYQGKNHGKKLRNYYAANSCPPPARMSNVVEPA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_071 CALEELCKPLYCKLCNVTLNSAQQAQAHYQGKNHGKKLRNYYAANSCPPPARMSNVVEPA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 ATPVVPVPPQMGSFKPGGRVILATENDYCKLCDASFSSPAVAQAHYQGKNHAKRLRLAEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_071 ATPVVPVPPQMGSFKPGGRVILATENDYCKLCDASFSSPAVAQAHYQGKNHAKRLRLAEA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE5 QSNSFSESSELGQRRARKEGNEFKMMPNRRNMYTVQNNSAGPYFNPRSRQRIPRDLAMCV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_071 QSNSFSESSELGQRRARKEGNEFKMMPNRRNMYTVQNNSAGPYFNPRSRQRIPRDLAMCV
              190       200       210       220       230       240

              250       260       270       280         
pF1KE5 TPSGQFYCSMCNVGAGEEMEFRQHLESKQHKSKVSEQRYRNEMENLGYV
       :::::::::::::::::::::::::::::::::::::::::::::::::
NP_071 TPSGQFYCSMCNVGAGEEMEFRQHLESKQHKSKVSEQRYRNEMENLGYV
              250       260       270       280         

>>XP_011511375 (OMIM: 606452) PREDICTED: zinc finger mat  (289 aa)
 initn: 1992 init1: 1992 opt: 1992  Z-score: 1660.0  bits: 315.1 E(85289): 1e-85
Smith-Waterman score: 1992; 100.0% identity (100.0% similar) in 289 aa overlap (1-289:1-289)

               10        20        30        40        50        60
pF1KE5 MILLQHAVLPPPKQPSPSPPMSVATRSTGTLQLPPQKPFGQEASLPLAGEEELSKGGEQD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MILLQHAVLPPPKQPSPSPPMSVATRSTGTLQLPPQKPFGQEASLPLAGEEELSKGGEQD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 CALEELCKPLYCKLCNVTLNSAQQAQAHYQGKNHGKKLRNYYAANSCPPPARMSNVVEPA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 CALEELCKPLYCKLCNVTLNSAQQAQAHYQGKNHGKKLRNYYAANSCPPPARMSNVVEPA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 ATPVVPVPPQMGSFKPGGRVILATENDYCKLCDASFSSPAVAQAHYQGKNHAKRLRLAEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ATPVVPVPPQMGSFKPGGRVILATENDYCKLCDASFSSPAVAQAHYQGKNHAKRLRLAEA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE5 QSNSFSESSELGQRRARKEGNEFKMMPNRRNMYTVQNNSAGPYFNPRSRQRIPRDLAMCV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 QSNSFSESSELGQRRARKEGNEFKMMPNRRNMYTVQNNSAGPYFNPRSRQRIPRDLAMCV
              190       200       210       220       230       240

              250       260       270       280         
pF1KE5 TPSGQFYCSMCNVGAGEEMEFRQHLESKQHKSKVSEQRYRNEMENLGYV
       :::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TPSGQFYCSMCNVGAGEEMEFRQHLESKQHKSKVSEQRYRNEMENLGYV
              250       260       270       280         

>>NP_689426 (OMIM: 606452) zinc finger matrin-type prote  (288 aa)
 initn: 1499 init1: 1499 opt: 1975  Z-score: 1645.9  bits: 312.5 E(85289): 6.1e-85
Smith-Waterman score: 1975; 99.7% identity (99.7% similar) in 289 aa overlap (1-289:1-288)

               10        20        30        40        50        60
pF1KE5 MILLQHAVLPPPKQPSPSPPMSVATRSTGTLQLPPQKPFGQEASLPLAGEEELSKGGEQD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_689 MILLQHAVLPPPKQPSPSPPMSVATRSTGTLQLPPQKPFGQEASLPLAGEEELSKGGEQD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 CALEELCKPLYCKLCNVTLNSAQQAQAHYQGKNHGKKLRNYYAANSCPPPARMSNVVEPA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_689 CALEELCKPLYCKLCNVTLNSAQQAQAHYQGKNHGKKLRNYYAANSCPPPARMSNVVEPA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 ATPVVPVPPQMGSFKPGGRVILATENDYCKLCDASFSSPAVAQAHYQGKNHAKRLRLAEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_689 ATPVVPVPPQMGSFKPGGRVILATENDYCKLCDASFSSPAVAQAHYQGKNHAKRLRLAEA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE5 QSNSFSESSELGQRRARKEGNEFKMMPNRRNMYTVQNNSAGPYFNPRSRQRIPRDLAMCV
       ::::::::::::::::::::::::::::::::::::::: ::::::::::::::::::::
NP_689 QSNSFSESSELGQRRARKEGNEFKMMPNRRNMYTVQNNS-GPYFNPRSRQRIPRDLAMCV
              190       200       210        220       230         

              250       260       270       280         
pF1KE5 TPSGQFYCSMCNVGAGEEMEFRQHLESKQHKSKVSEQRYRNEMENLGYV
       :::::::::::::::::::::::::::::::::::::::::::::::::
NP_689 TPSGQFYCSMCNVGAGEEMEFRQHLESKQHKSKVSEQRYRNEMENLGYV
     240       250       260       270       280        

>>XP_005247763 (OMIM: 606452) PREDICTED: zinc finger mat  (288 aa)
 initn: 1499 init1: 1499 opt: 1975  Z-score: 1645.9  bits: 312.5 E(85289): 6.1e-85
Smith-Waterman score: 1975; 99.7% identity (99.7% similar) in 289 aa overlap (1-289:1-288)

               10        20        30        40        50        60
pF1KE5 MILLQHAVLPPPKQPSPSPPMSVATRSTGTLQLPPQKPFGQEASLPLAGEEELSKGGEQD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MILLQHAVLPPPKQPSPSPPMSVATRSTGTLQLPPQKPFGQEASLPLAGEEELSKGGEQD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 CALEELCKPLYCKLCNVTLNSAQQAQAHYQGKNHGKKLRNYYAANSCPPPARMSNVVEPA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 CALEELCKPLYCKLCNVTLNSAQQAQAHYQGKNHGKKLRNYYAANSCPPPARMSNVVEPA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 ATPVVPVPPQMGSFKPGGRVILATENDYCKLCDASFSSPAVAQAHYQGKNHAKRLRLAEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 ATPVVPVPPQMGSFKPGGRVILATENDYCKLCDASFSSPAVAQAHYQGKNHAKRLRLAEA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE5 QSNSFSESSELGQRRARKEGNEFKMMPNRRNMYTVQNNSAGPYFNPRSRQRIPRDLAMCV
       ::::::::::::::::::::::::::::::::::::::: ::::::::::::::::::::
XP_005 QSNSFSESSELGQRRARKEGNEFKMMPNRRNMYTVQNNS-GPYFNPRSRQRIPRDLAMCV
              190       200       210        220       230         

              250       260       270       280         
pF1KE5 TPSGQFYCSMCNVGAGEEMEFRQHLESKQHKSKVSEQRYRNEMENLGYV
       :::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 TPSGQFYCSMCNVGAGEEMEFRQHLESKQHKSKVSEQRYRNEMENLGYV
     240       250       260       270       280        




289 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 23:45:14 2016 done: Mon Nov  7 23:45:15 2016
 Total Scan time:  6.580 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]