FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5313, 294 aa
  1>>>pF1KE5313 294 - 294 aa - 294 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3089+/-0.000778; mu= 15.5637+/- 0.047
 mean_var=65.9600+/-13.020, 0's: 0 Z-trim(107.7): 12  B-trim: 8 in 1/51
 Lambda= 0.157919
 statistics sampled from 9746 (9751) to 9746 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.681), E-opt: 0.2 (0.3), width:  16
 Scan time:  2.050

The best scores are:                                      opt bits E(32554)
CCDS7870.1 MPPED2 gene_id:744|Hs108|chr11          ( 294) 2070 480.2 8.1e-136
CCDS44560.1 MPPED2 gene_id:744|Hs108|chr11         ( 277) 1797 417.9 4.1e-117
CCDS46723.1 MPPED1 gene_id:758|Hs108|chr22         ( 326) 1727 402.0 2.9e-112


>>CCDS7870.1 MPPED2 gene_id:744|Hs108|chr11               (294 aa)
 initn: 2070 init1: 2070 opt: 2070  Z-score: 2551.9  bits: 480.2 E(32554): 8.1e-136
Smith-Waterman score: 2070; 100.0% identity (100.0% similar) in 294 aa overlap (1-294:1-294)

               10        20        30        40        50        60
pF1KE5 MAHGIPSQGKVTITVDEYSSNPTQAFTHYNINQSRFQPPHVHMVDPIPYDTPKPAGHTRF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 MAHGIPSQGKVTITVDEYSSNPTQAFTHYNINQSRFQPPHVHMVDPIPYDTPKPAGHTRF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 VCISDTHSRTDGIQMPYGDILLHTGDFTELGLPSEVKKFNDWLGNLPYEYKIVIAGNHEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 VCISDTHSRTDGIQMPYGDILLHTGDFTELGLPSEVKKFNDWLGNLPYEYKIVIAGNHEL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 TFDKEFMADLVKQDYYRFPSVSKLKPEDFDNVQSLLTNSIYLQDSEVTVKGFRIYGAPWT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 TFDKEFMADLVKQDYYRFPSVSKLKPEDFDNVQSLLTNSIYLQDSEVTVKGFRIYGAPWT
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE5 PWFNGWGFNLPRGQSLLDKWNLIPEGIDILMTHGPPLGFRDWVPKELQRVGCVELLNTVQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 PWFNGWGFNLPRGQSLLDKWNLIPEGIDILMTHGPPLGFRDWVPKELQRVGCVELLNTVQ
              190       200       210       220       230       240

              250       260       270       280       290    
pF1KE5 RRVRPKLHVFGGIHEGYGIMTDGYTTYINASTCTVSFQPTNPPIIFDLPNPQGS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 RRVRPKLHVFGGIHEGYGIMTDGYTTYINASTCTVSFQPTNPPIIFDLPNPQGS
              250       260       270       280       290    

>>CCDS44560.1 MPPED2 gene_id:744|Hs108|chr11              (277 aa)
 initn: 1797 init1: 1797 opt: 1797  Z-score: 2216.1  bits: 417.9 E(32554): 4.1e-117
Smith-Waterman score: 1797; 100.0% identity (100.0% similar) in 255 aa overlap (1-255:1-255)

               10        20        30        40        50        60
pF1KE5 MAHGIPSQGKVTITVDEYSSNPTQAFTHYNINQSRFQPPHVHMVDPIPYDTPKPAGHTRF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 MAHGIPSQGKVTITVDEYSSNPTQAFTHYNINQSRFQPPHVHMVDPIPYDTPKPAGHTRF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 VCISDTHSRTDGIQMPYGDILLHTGDFTELGLPSEVKKFNDWLGNLPYEYKIVIAGNHEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 VCISDTHSRTDGIQMPYGDILLHTGDFTELGLPSEVKKFNDWLGNLPYEYKIVIAGNHEL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 TFDKEFMADLVKQDYYRFPSVSKLKPEDFDNVQSLLTNSIYLQDSEVTVKGFRIYGAPWT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 TFDKEFMADLVKQDYYRFPSVSKLKPEDFDNVQSLLTNSIYLQDSEVTVKGFRIYGAPWT
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE5 PWFNGWGFNLPRGQSLLDKWNLIPEGIDILMTHGPPLGFRDWVPKELQRVGCVELLNTVQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 PWFNGWGFNLPRGQSLLDKWNLIPEGIDILMTHGPPLGFRDWVPKELQRVGCVELLNTVQ
              190       200       210       220       230       240

              250       260       270       280       290    
pF1KE5 RRVRPKLHVFGGIHEGYGIMTDGYTTYINASTCTVSFQPTNPPIIFDLPNPQGS
       :::::::::::::::                                       
CCDS44 RRVRPKLHVFGGIHEVNPVSISKALRTKICSLPSKTS                 
              250       260       270                        

>>CCDS46723.1 MPPED1 gene_id:758|Hs108|chr22              (326 aa)
 initn: 1748 init1: 1727 opt: 1727  Z-score: 2128.8  bits: 402.0 E(32554): 2.9e-112
Smith-Waterman score: 1727; 79.3% identity (94.6% similar) in 294 aa overlap (1-294:33-326)

                                             10        20        30
pF1KE5                               MAHGIPSQGKVTITVDEYSSNPTQAFTHYN
                                     ::    ..... : ::::::::::::: ::
CCDS46 RSRWDASVLKAEALALLPCGLGMAFSQSHVMAARRHQHSRLIIEVDEYSSNPTQAFTFYN
             10        20        30        40        50        60  

               40        50        60        70        80        90
pF1KE5 INQSRFQPPHVHMVDPIPYDTPKPAGHTRFVCISDTHSRTDGIQMPYGDILLHTGDFTEL
       :::.:::::::.::::.:.:.::: :.:::::.:::::::: :::::::.:.:.::::::
CCDS46 INQGRFQPPHVQMVDPVPHDAPKPPGYTRFVCVSDTHSRTDPIQMPYGDVLIHAGDFTEL
             70        80        90       100       110       120  

              100       110       120       130       140       150
pF1KE5 GLPSEVKKFNDWLGNLPYEYKIVIAGNHELTFDKEFMADLVKQDYYRFPSVSKLKPEDFD
       ::::::::::.:::.::::::::::::::::::.::::::.:::.: ::::::::::...
CCDS46 GLPSEVKKFNEWLGSLPYEYKIVIAGNHELTFDQEFMADLIKQDFYYFPSVSKLKPENYE
            130       140       150       160       170       180  

              160       170       180       190       200       210
pF1KE5 NVQSLLTNSIYLQDSEVTVKGFRIYGAPWTPWFNGWGFNLPRGQSLLDKWNLIPEGIDIL
       :::::::: ::::::::::.::::::.:: ::: ::::::::::.::.::::::::.:::
CCDS46 NVQSLLTNCIYLQDSEVTVRGFRIYGSPWQPWFYGWGFNLPRGQALLEKWNLIPEGVDIL
            190       200       210       220       230       240  

              220       230       240       250       260       270
pF1KE5 MTHGPPLGFRDWVPKELQRVGCVELLNTVQRRVRPKLHVFGGIHEGYGIMTDGYTTYINA
       .:::::::: :::::..::::::::::::::::.:.::::: ::::::.:.:: :::.::
CCDS46 ITHGPPLGFLDWVPKKMQRVGCVELLNTVQRRVQPRLHVFGHIHEGYGVMADGTTTYVNA
            250       260       270       280       290       300  

              280       290    
pF1KE5 STCTVSFQPTNPPIIFDLPNPQGS
       :.:::..::.::::..:::.:..:
CCDS46 SVCTVNYQPVNPPIVIDLPTPRNS
            310       320      




294 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 23:43:41 2016 done: Mon Nov  7 23:43:42 2016
 Total Scan time:  2.050 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]