FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5307, 270 aa
  1>>>pF1KE5307 270 - 270 aa - 270 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.2601+/-0.000678; mu= 12.4317+/- 0.041
 mean_var=113.4294+/-22.390, 0's: 0 Z-trim(114.2): 17  B-trim: 2 in 1/51
 Lambda= 0.120424
 statistics sampled from 14755 (14771) to 14755 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.792), E-opt: 0.2 (0.454), width:  16
 Scan time:  1.670

The best scores are:                                      opt bits E(32554)
CCDS3350.1 SLBP gene_id:7884|Hs108|chr4            ( 270) 1885 337.4 6.6e-93
CCDS82903.1 SLBP gene_id:7884|Hs108|chr4           ( 231) 1446 261.0 5.3e-70
CCDS77889.1 SLBP gene_id:7884|Hs108|chr4           ( 235) 1224 222.5 2.2e-58


>>CCDS3350.1 SLBP gene_id:7884|Hs108|chr4                 (270 aa)
 initn: 1885 init1: 1885 opt: 1885  Z-score: 1781.5  bits: 337.4 E(32554): 6.6e-93
Smith-Waterman score: 1885; 100.0% identity (100.0% similar) in 270 aa overlap (1-270:1-270)

               10        20        30        40        50        60
pF1KE5 MACRPRSPPRHQSRCDGDASPPSPARWSLGRKRRADGRRWRPEDAEEAEHRGAERRPESF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 MACRPRSPPRHQSRCDGDASPPSPARWSLGRKRRADGRRWRPEDAEEAEHRGAERRPESF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 TTPEGPKPRSRCSDWASAVEEDEMRTRVNKEMARYKRKLLINDFGRERKSSSGSSDSKES
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 TTPEGPKPRSRCSDWASAVEEDEMRTRVNKEMARYKRKLLINDFGRERKSSSGSSDSKES
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 MSTVPADFETDESVLMRRQKQINYGKNTIAYDRYIKEVPRHLRQPGIHPKTPNKFKKYSR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 MSTVPADFETDESVLMRRQKQINYGKNTIAYDRYIKEVPRHLRQPGIHPKTPNKFKKYSR
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE5 RSWDQQIKLWKVALHFWDPPAEEGCDLQEIHPVDLESAESSSEPQTSSQDDFDVYSGTPT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 RSWDQQIKLWKVALHFWDPPAEEGCDLQEIHPVDLESAESSSEPQTSSQDDFDVYSGTPT
              190       200       210       220       230       240

              250       260       270
pF1KE5 KVRHMDSQVEDEFDLEACLTEPLRDFSAMS
       ::::::::::::::::::::::::::::::
CCDS33 KVRHMDSQVEDEFDLEACLTEPLRDFSAMS
              250       260       270

>>CCDS82903.1 SLBP gene_id:7884|Hs108|chr4                (231 aa)
 initn: 1446 init1: 1446 opt: 1446  Z-score: 1370.2  bits: 261.0 E(32554): 5.3e-70
Smith-Waterman score: 1510; 85.6% identity (85.6% similar) in 270 aa overlap (1-270:1-231)

               10        20        30        40        50        60
pF1KE5 MACRPRSPPRHQSRCDGDASPPSPARWSLGRKRRADGRRWRPEDAEEAEHRGAERRPESF
       ::::::::::::::::::::                                       :
CCDS82 MACRPRSPPRHQSRCDGDAS---------------------------------------F
               10        20                                        

               70        80        90       100       110       120
pF1KE5 TTPEGPKPRSRCSDWASAVEEDEMRTRVNKEMARYKRKLLINDFGRERKSSSGSSDSKES
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 TTPEGPKPRSRCSDWASAVEEDEMRTRVNKEMARYKRKLLINDFGRERKSSSGSSDSKES
              30        40        50        60        70        80 

              130       140       150       160       170       180
pF1KE5 MSTVPADFETDESVLMRRQKQINYGKNTIAYDRYIKEVPRHLRQPGIHPKTPNKFKKYSR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 MSTVPADFETDESVLMRRQKQINYGKNTIAYDRYIKEVPRHLRQPGIHPKTPNKFKKYSR
              90       100       110       120       130       140 

              190       200       210       220       230       240
pF1KE5 RSWDQQIKLWKVALHFWDPPAEEGCDLQEIHPVDLESAESSSEPQTSSQDDFDVYSGTPT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 RSWDQQIKLWKVALHFWDPPAEEGCDLQEIHPVDLESAESSSEPQTSSQDDFDVYSGTPT
             150       160       170       180       190       200 

              250       260       270
pF1KE5 KVRHMDSQVEDEFDLEACLTEPLRDFSAMS
       ::::::::::::::::::::::::::::::
CCDS82 KVRHMDSQVEDEFDLEACLTEPLRDFSAMS
             210       220       230 

>>CCDS77889.1 SLBP gene_id:7884|Hs108|chr4                (235 aa)
 initn: 1232 init1: 1205 opt: 1224  Z-score: 1161.7  bits: 222.5 E(32554): 2.2e-58
Smith-Waterman score: 1564; 87.0% identity (87.0% similar) in 270 aa overlap (1-270:1-235)

               10        20        30        40        50        60
pF1KE5 MACRPRSPPRHQSRCDGDASPPSPARWSLGRKRRADGRRWRPEDAEEAEHRGAERRPESF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::  
CCDS77 MACRPRSPPRHQSRCDGDASPPSPARWSLGRKRRADGRRWRPEDAEEAEHRGAERRPE--
               10        20        30        40        50          

               70        80        90       100       110       120
pF1KE5 TTPEGPKPRSRCSDWASAVEEDEMRTRVNKEMARYKRKLLINDFGRERKSSSGSSDSKES
                                        :::::::::::::::::::::::::::
CCDS77 ---------------------------------RYKRKLLINDFGRERKSSSGSSDSKES
                                        60        70        80     

              130       140       150       160       170       180
pF1KE5 MSTVPADFETDESVLMRRQKQINYGKNTIAYDRYIKEVPRHLRQPGIHPKTPNKFKKYSR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 MSTVPADFETDESVLMRRQKQINYGKNTIAYDRYIKEVPRHLRQPGIHPKTPNKFKKYSR
          90       100       110       120       130       140     

              190       200       210       220       230       240
pF1KE5 RSWDQQIKLWKVALHFWDPPAEEGCDLQEIHPVDLESAESSSEPQTSSQDDFDVYSGTPT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 RSWDQQIKLWKVALHFWDPPAEEGCDLQEIHPVDLESAESSSEPQTSSQDDFDVYSGTPT
         150       160       170       180       190       200     

              250       260       270
pF1KE5 KVRHMDSQVEDEFDLEACLTEPLRDFSAMS
       ::::::::::::::::::::::::::::::
CCDS77 KVRHMDSQVEDEFDLEACLTEPLRDFSAMS
         210       220       230     




270 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 23:41:18 2016 done: Mon Nov  7 23:41:19 2016
 Total Scan time:  1.670 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]