FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5301, 260 aa
  1>>>pF1KE5301 260 - 260 aa - 260 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.2838+/-0.000569; mu= 21.5925+/- 0.035
 mean_var=66.3274+/-13.239, 0's: 0 Z-trim(113.5): 12  B-trim: 0 in 0/53
 Lambda= 0.157481
 statistics sampled from 14103 (14114) to 14103 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.778), E-opt: 0.2 (0.434), width:  16
 Scan time:  2.310

The best scores are:                                      opt bits E(32554)
CCDS12870.1 CACNG6 gene_id:59285|Hs108|chr19       ( 260) 1760 407.6 4.3e-114
CCDS12871.1 CACNG6 gene_id:59285|Hs108|chr19       ( 214)  919 216.5 1.2e-56
CCDS11668.1 CACNG1 gene_id:786|Hs108|chr17         ( 222)  559 134.7 5.3e-32


>>CCDS12870.1 CACNG6 gene_id:59285|Hs108|chr19            (260 aa)
 initn: 1760 init1: 1760 opt: 1760  Z-score: 2161.8  bits: 407.6 E(32554): 4.3e-114
Smith-Waterman score: 1760; 100.0% identity (100.0% similar) in 260 aa overlap (1-260:1-260)

               10        20        30        40        50        60
pF1KE5 MMWSNFFLQEENRRRGAAGRRRAHGQGRSGLTPEREGKVKLALLLAAVGATLAVLSVGTE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MMWSNFFLQEENRRRGAAGRRRAHGQGRSGLTPEREGKVKLALLLAAVGATLAVLSVGTE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 FWVELNTYKANGSAVCEAAHLGLWKACTKRLWQADVPVDRDTCGPAELPGEANCTYFKFF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 FWVELNTYKANGSAVCEAAHLGLWKACTKRLWQADVPVDRDTCGPAELPGEANCTYFKFF
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 TTGENARIFQRTTKKEVNLAAAVIAVLGLAVMALGCLCIIMVLSKGAEFLLRVGAVCFGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 TTGENARIFQRTTKKEVNLAAAVIAVLGLAVMALGCLCIIMVLSKGAEFLLRVGAVCFGL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE5 SGLLLLVSLEVFRHSVRALLQRVSPEPPPAPRLTYEYSWSLGCGVGAGLILLLGAGCFLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 SGLLLLVSLEVFRHSVRALLQRVSPEPPPAPRLTYEYSWSLGCGVGAGLILLLGAGCFLL
              190       200       210       220       230       240

              250       260
pF1KE5 LTLPSWPWGSLCPKRGHRAT
       ::::::::::::::::::::
CCDS12 LTLPSWPWGSLCPKRGHRAT
              250       260

>>CCDS12871.1 CACNG6 gene_id:59285|Hs108|chr19            (214 aa)
 initn: 1460 init1: 918 opt: 919  Z-score: 1130.2  bits: 216.5 E(32554): 1.2e-56
Smith-Waterman score: 1372; 82.3% identity (82.3% similar) in 260 aa overlap (1-260:1-214)

               10        20        30        40        50        60
pF1KE5 MMWSNFFLQEENRRRGAAGRRRAHGQGRSGLTPEREGKVKLALLLAAVGATLAVLSVGTE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MMWSNFFLQEENRRRGAAGRRRAHGQGRSGLTPEREGKVKLALLLAAVGATLAVLSVGTE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 FWVELNTYKANGSAVCEAAHLGLWKACTKRLWQADVPVDRDTCGPAELPGEANCTYFKFF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 FWVELNTYKANGSAVCEAAHLGLWKACTKRLWQADVPVDRDTCGPAELPGEANCTYFKFF
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 TTGENARIFQRTTKKEVNLAAAVIAVLGLAVMALGCLCIIMVLSKGAEFLLRVGAVCFGL
       :::::::::::::::                                             
CCDS12 TTGENARIFQRTTKK---------------------------------------------
              130                                                  

              190       200       210       220       230       240
pF1KE5 SGLLLLVSLEVFRHSVRALLQRVSPEPPPAPRLTYEYSWSLGCGVGAGLILLLGAGCFLL
        :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 -GLLLLVSLEVFRHSVRALLQRVSPEPPPAPRLTYEYSWSLGCGVGAGLILLLGAGCFLL
          140       150       160       170       180       190    

              250       260
pF1KE5 LTLPSWPWGSLCPKRGHRAT
       ::::::::::::::::::::
CCDS12 LTLPSWPWGSLCPKRGHRAT
          200       210    

>>CCDS11668.1 CACNG1 gene_id:786|Hs108|chr17              (222 aa)
 initn: 584 init1: 328 opt: 559  Z-score: 688.0  bits: 134.7 E(32554): 5.3e-32
Smith-Waterman score: 559; 39.7% identity (72.6% similar) in 219 aa overlap (38-252:8-215)

        10        20        30        40        50        60       
pF1KE5 LQEENRRRGAAGRRRAHGQGRSGLTPEREGKVKLALLLAAVGATLAVLSVGTEFWVELNT
                                     ::...:.   .: .::. .: :. :. :. 
CCDS11                        MSQTKMLKVRVTLFCILAGIVLAMTAVVTDHWAVLSP
                                      10        20        30       

        70        80        90       100        110       120      
pF1KE5 YKANGSAVCEAAHLGLWKACTKRLWQADVPVDRD-TCGPAELPGEANCTYFKFFTTGENA
       .  . ...:::::.:::. ::::     .:.: . ::::  :::: ::.::. :. ::..
CCDS11 HMEHHNTTCEAAHFGLWRICTKR-----IPMDDSKTCGPITLPGEKNCSYFRHFNPGESS
        40        50        60             70        80        90  

        130       140       150       160       170       180      
pF1KE5 RIFQRTTKKEVNLAAAVIAVLGLAVMALGCLCIIMVLSKGAEFLLRVGAVCFGLSGLLLL
       .::. ::.:: ...::.::...:. . :: ::... :.:  ..::: ... ....:: .:
CCDS11 EIFEFTTQKEYSISAAAIAIFSLGFIILGSLCVLLSLGKKRDYLLRPASMFYAFAGLCIL
            100       110       120       130       140       150  

        190       200       210       220       230       240      
pF1KE5 VSLEVFRHSVRALLQRVSPEPPPAPRLTYEYSWSLGCGVGAGLILLLGAGCFLLLTLPSW
       ::.::.:.::. ..     .   .  . : ::::..:. .: ..:.::.  .::..::  
CCDS11 VSVEVMRQSVKRMI-----DSEDTVWIEYYYSWSFACACAAFILLFLGGLALLLFSLPRM
            160            170       180       190       200       

           250       260
pF1KE5 P---WGSLCPKRGHRAT
       :   : : :        
CCDS11 PRNPWES-CMDAEPEH 
       210        220   




260 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 07:28:32 2016 done: Tue Nov  8 07:28:33 2016
 Total Scan time:  2.310 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]