FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5296, 174 aa
  1>>>pF1KE5296 174 - 174 aa - 174 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.5987+/-0.00078; mu= 11.3647+/- 0.047
 mean_var=71.3826+/-13.828, 0's: 0 Z-trim(109.1): 12  B-trim: 164 in 1/50
 Lambda= 0.151802
 statistics sampled from 10643 (10653) to 10643 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.721), E-opt: 0.2 (0.327), width:  16
 Scan time:  1.810

The best scores are:                                      opt bits E(32554)
CCDS1646.1 TPO gene_id:7173|Hs108|chr2             ( 760) 1035 235.5 5.5e-62
CCDS1644.1 TPO gene_id:7173|Hs108|chr2             ( 876) 1035 235.5 6.2e-62
CCDS1643.1 TPO gene_id:7173|Hs108|chr2             ( 933) 1035 235.5 6.5e-62


>>CCDS1646.1 TPO gene_id:7173|Hs108|chr2                  (760 aa)
 initn: 1035 init1: 1035 opt: 1035  Z-score: 1226.3  bits: 235.5 E(32554): 5.5e-62
Smith-Waterman score: 1035; 99.4% identity (99.4% similar) in 161 aa overlap (1-161:1-161)

               10        20        30        40        50        60
pF1KE5 MRALAVLSVTLVMACTEAFFPFISRGKELLWGKPEESRVSSVLEESKRLVDTAMYATMQR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS16 MRALAVLSVTLVMACTEAFFPFISRGKELLWGKPEESRVSSVLEESKRLVDTAMYATMQR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 NLKKRGILSAAQLLSFSKLPEPTSGVIARAAEIMETSIQAMKRKVNLKTQQSQHPTDALS
       ::::::::: ::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS16 NLKKRGILSPAQLLSFSKLPEPTSGVIARAAEIMETSIQAMKRKVNLKTQQSQHPTDALS
               70        80        90       100       110       120

              130       140       150       160       170          
pF1KE5 EDLLSIIANMSGCLPYMLPPKCPNTCLANKYRPITGACNNRKMKYKPDHSETAN      
       :::::::::::::::::::::::::::::::::::::::::                   
CCDS16 EDLLSIIANMSGCLPYMLPPKCPNTCLANKYRPITGACNNRDHPRWGASNTALARWLPPV
              130       140       150       160       170       180

CCDS16 YEDGFSQPRGWNPGFLYNGFPLPPVREVTRHVIQVSNEVVTDDDRYSDLLMAWGQYIDHD
              190       200       210       220       230       240

>>CCDS1644.1 TPO gene_id:7173|Hs108|chr2                  (876 aa)
 initn: 1035 init1: 1035 opt: 1035  Z-score: 1225.4  bits: 235.5 E(32554): 6.2e-62
Smith-Waterman score: 1035; 99.4% identity (99.4% similar) in 161 aa overlap (1-161:1-161)

               10        20        30        40        50        60
pF1KE5 MRALAVLSVTLVMACTEAFFPFISRGKELLWGKPEESRVSSVLEESKRLVDTAMYATMQR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS16 MRALAVLSVTLVMACTEAFFPFISRGKELLWGKPEESRVSSVLEESKRLVDTAMYATMQR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 NLKKRGILSAAQLLSFSKLPEPTSGVIARAAEIMETSIQAMKRKVNLKTQQSQHPTDALS
       ::::::::: ::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS16 NLKKRGILSPAQLLSFSKLPEPTSGVIARAAEIMETSIQAMKRKVNLKTQQSQHPTDALS
               70        80        90       100       110       120

              130       140       150       160       170          
pF1KE5 EDLLSIIANMSGCLPYMLPPKCPNTCLANKYRPITGACNNRKMKYKPDHSETAN      
       :::::::::::::::::::::::::::::::::::::::::                   
CCDS16 EDLLSIIANMSGCLPYMLPPKCPNTCLANKYRPITGACNNRDHPRWGASNTALARWLPPV
              130       140       150       160       170       180

CCDS16 YEDGFSQPRGWNPGFLYNGFPLPPVREVTRHVIQVSNEVVTDDDRYSDLLMAWGQYIDHD
              190       200       210       220       230       240

>>CCDS1643.1 TPO gene_id:7173|Hs108|chr2                  (933 aa)
 initn: 1035 init1: 1035 opt: 1035  Z-score: 1225.0  bits: 235.5 E(32554): 6.5e-62
Smith-Waterman score: 1035; 99.4% identity (99.4% similar) in 161 aa overlap (1-161:1-161)

               10        20        30        40        50        60
pF1KE5 MRALAVLSVTLVMACTEAFFPFISRGKELLWGKPEESRVSSVLEESKRLVDTAMYATMQR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS16 MRALAVLSVTLVMACTEAFFPFISRGKELLWGKPEESRVSSVLEESKRLVDTAMYATMQR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 NLKKRGILSAAQLLSFSKLPEPTSGVIARAAEIMETSIQAMKRKVNLKTQQSQHPTDALS
       ::::::::: ::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS16 NLKKRGILSPAQLLSFSKLPEPTSGVIARAAEIMETSIQAMKRKVNLKTQQSQHPTDALS
               70        80        90       100       110       120

              130       140       150       160       170          
pF1KE5 EDLLSIIANMSGCLPYMLPPKCPNTCLANKYRPITGACNNRKMKYKPDHSETAN      
       :::::::::::::::::::::::::::::::::::::::::                   
CCDS16 EDLLSIIANMSGCLPYMLPPKCPNTCLANKYRPITGACNNRDHPRWGASNTALARWLPPV
              130       140       150       160       170       180

CCDS16 YEDGFSQPRGWNPGFLYNGFPLPPVREVTRHVIQVSNEVVTDDDRYSDLLMAWGQYIDHD
              190       200       210       220       230       240




174 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 23:38:18 2016 done: Mon Nov  7 23:38:18 2016
 Total Scan time:  1.810 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]