FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5294, 221 aa
  1>>>pF1KE5294 221 - 221 aa - 221 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.6380+/-0.00089; mu= 12.1528+/- 0.053
 mean_var=67.3608+/-13.529, 0's: 0 Z-trim(105.6): 19  B-trim: 0 in 0/51
 Lambda= 0.156268
 statistics sampled from 8500 (8503) to 8500 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.646), E-opt: 0.2 (0.261), width:  16
 Scan time:  2.130

The best scores are:                                      opt bits E(32554)
CCDS2217.1 IFIH1 gene_id:64135|Hs108|chr2          (1025) 1358 315.2 9.9e-86


>>CCDS2217.1 IFIH1 gene_id:64135|Hs108|chr2               (1025 aa)
 initn: 1397 init1: 1358 opt: 1358  Z-score: 1652.7  bits: 315.2 E(32554): 9.9e-86
Smith-Waterman score: 1358; 97.2% identity (98.6% similar) in 216 aa overlap (1-216:1-216)

               10        20        30        40        50        60
pF1KE5 MSNGYSTDENFRYLISCFRARVKMYIQVEPVLDYLTFLPAEVKEQIQRTVATSGNMQAVE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS22 MSNGYSTDENFRYLISCFRARVKMYIQVEPVLDYLTFLPAEVKEQIQRTVATSGNMQAVE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 LLLSTLEKGVWHLGWTREFVEALRRTGSPLAARYMNPELTDLPSPSFENAHDEYLQLLNL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS22 LLLSTLEKGVWHLGWTREFVEALRRTGSPLAARYMNPELTDLPSPSFENAHDEYLQLLNL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 LQPTLVDKLLVRDVLDKCMEEELLTIEDRNRIAAAENNGNESGVRELLKRIVQKENWFSA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS22 LQPTLVDKLLVRDVLDKCMEEELLTIEDRNRIAAAENNGNESGVRELLKRIVQKENWFSA
              130       140       150       160       170       180

              190       200       210       220                    
pF1KE5 FLNVLRQTGNNELVQELTGSDCSESNAGICNFTEEDSSNSA                   
       ::::::::::::::::::::::::::: : :... :                        
CCDS22 FLNVLRQTGNNELVQELTGSDCSESNAEIENLSQVDGPQVEEQLLSTTVQPNLEKEVWGM
              190       200       210       220       230       240

CCDS22 ENNSSESSFADSSVVSESDTSLAEGSVSCLDESLGHNSNMGSDSGTMGSDSDEENVAARA
              250       260       270       280       290       300




221 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 23:29:16 2016 done: Mon Nov  7 23:29:16 2016
 Total Scan time:  2.130 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]