Result of FASTA (ccds) for
pFN21AE5288
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE5288, 233 aa
1>>>pF1KE5288 233 - 233 aa - 233 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.7434+/-0.000668; mu= 14.0443+/- 0.040
mean_var=95.4690+/-19.131, 0's: 0 Z-trim(113.0): 36 B-trim: 0 in 0/52
Lambda= 0.131263
statistics sampled from 13612 (13648) to 13612 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.773), E-opt: 0.2 (0.419), width: 16
Scan time: 1.830
The best scores are: opt bits E(32554)
CCDS3249.1 HTR3D gene_id:200909|Hs108|chr3 ( 279) 1585 309.4 1.5e-84
CCDS46966.1 HTR3D gene_id:200909|Hs108|chr3 ( 404) 1585 309.6 2e-84
CCDS54685.1 HTR3D gene_id:200909|Hs108|chr3 ( 454) 1491 291.8 4.9e-79
CCDS58869.1 HTR3E gene_id:285242|Hs108|chr3 ( 441) 974 193.9 1.4e-49
CCDS58868.1 HTR3E gene_id:285242|Hs108|chr3 ( 456) 974 193.9 1.5e-49
CCDS58870.1 HTR3E gene_id:285242|Hs108|chr3 ( 456) 974 193.9 1.5e-49
CCDS3251.1 HTR3E gene_id:285242|Hs108|chr3 ( 471) 974 193.9 1.5e-49
CCDS58871.1 HTR3E gene_id:285242|Hs108|chr3 ( 482) 974 193.9 1.5e-49
CCDS3250.1 HTR3C gene_id:170572|Hs108|chr3 ( 447) 530 109.8 2.9e-24
>>CCDS3249.1 HTR3D gene_id:200909|Hs108|chr3 (279 aa)
initn: 1585 init1: 1585 opt: 1585 Z-score: 1631.5 bits: 309.4 E(32554): 1.5e-84
Smith-Waterman score: 1585; 100.0% identity (100.0% similar) in 232 aa overlap (2-233:48-279)
10 20 30
pF1KE5 MVAIRRRCRPSPYVVNFLVPSGILIAIDALS
::::::::::::::::::::::::::::::
CCDS32 GWSASANWTPSISPSMDRGERSPSALSPTQVAIRRRCRPSPYVVNFLVPSGILIAIDALS
20 30 40 50 60 70
40 50 60 70 80 90
pF1KE5 FYLPLESGNCAPFKMTVLLGYSVFLLMMNDLLPATSTSSHASLVRPHPSRDQKRGVYFAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 FYLPLESGNCAPFKMTVLLGYSVFLLMMNDLLPATSTSSHASLVRPHPSRDQKRGVYFAL
80 90 100 110 120 130
100 110 120 130 140 150
pF1KE5 CLSLMVGSLLETIFITHLLHVATTQPLPLPRWLHSLLLHCTGQGRCCPTAPQKGNKGPGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 CLSLMVGSLLETIFITHLLHVATTQPLPLPRWLHSLLLHCTGQGRCCPTAPQKGNKGPGL
140 150 160 170 180 190
160 170 180 190 200 210
pF1KE5 TPTHLPGVKEPEVSAGQMPGPGEAELTGGSEWTRAQREHEAQKQHSVELWVQFSHAMDAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 TPTHLPGVKEPEVSAGQMPGPGEAELTGGSEWTRAQREHEAQKQHSVELWVQFSHAMDAL
200 210 220 230 240 250
220 230
pF1KE5 LFRLYLLFMASSIITVICLWNT
::::::::::::::::::::::
CCDS32 LFRLYLLFMASSIITVICLWNT
260 270
>>CCDS46966.1 HTR3D gene_id:200909|Hs108|chr3 (404 aa)
initn: 1585 init1: 1585 opt: 1585 Z-score: 1629.3 bits: 309.6 E(32554): 2e-84
Smith-Waterman score: 1585; 100.0% identity (100.0% similar) in 232 aa overlap (2-233:173-404)
10 20 30
pF1KE5 MVAIRRRCRPSPYVVNFLVPSGILIAIDALS
::::::::::::::::::::::::::::::
CCDS46 TRREWVLLGIQKRTIKVTVATNQYEQAIFHVAIRRRCRPSPYVVNFLVPSGILIAIDALS
150 160 170 180 190 200
40 50 60 70 80 90
pF1KE5 FYLPLESGNCAPFKMTVLLGYSVFLLMMNDLLPATSTSSHASLVRPHPSRDQKRGVYFAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 FYLPLESGNCAPFKMTVLLGYSVFLLMMNDLLPATSTSSHASLVRPHPSRDQKRGVYFAL
210 220 230 240 250 260
100 110 120 130 140 150
pF1KE5 CLSLMVGSLLETIFITHLLHVATTQPLPLPRWLHSLLLHCTGQGRCCPTAPQKGNKGPGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 CLSLMVGSLLETIFITHLLHVATTQPLPLPRWLHSLLLHCTGQGRCCPTAPQKGNKGPGL
270 280 290 300 310 320
160 170 180 190 200 210
pF1KE5 TPTHLPGVKEPEVSAGQMPGPGEAELTGGSEWTRAQREHEAQKQHSVELWVQFSHAMDAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 TPTHLPGVKEPEVSAGQMPGPGEAELTGGSEWTRAQREHEAQKQHSVELWVQFSHAMDAL
330 340 350 360 370 380
220 230
pF1KE5 LFRLYLLFMASSIITVICLWNT
::::::::::::::::::::::
CCDS46 LFRLYLLFMASSIITVICLWNT
390 400
>>CCDS54685.1 HTR3D gene_id:200909|Hs108|chr3 (454 aa)
initn: 1502 init1: 1029 opt: 1491 Z-score: 1532.4 bits: 291.8 E(32554): 4.9e-79
Smith-Waterman score: 1491; 95.3% identity (95.7% similar) in 234 aa overlap (2-233:221-454)
10 20 30
pF1KE5 MVAIRRRCRPSPYVVNFLVPSGILIAIDALS
::::::::::::::::::::::::::::::
CCDS54 TRREWVLLGIQKRTIKVTVATNQYEQAIFHVAIRRRCRPSPYVVNFLVPSGILIAIDALS
200 210 220 230 240 250
40 50 60 70 80
pF1KE5 FYLPLESGNCAPFKMTVLLGYSVFLLMMNDLLPATSTSSHASLVRPHP--SRDQKRGVYF
:::::::::::::::::::::::::::::::::::::::::::: : . ::::
CCDS54 FYLPLESGNCAPFKMTVLLGYSVFLLMMNDLLPATSTSSHASLVAPLALMQTPLPAGVYF
260 270 280 290 300 310
90 100 110 120 130 140
pF1KE5 ALCLSLMVGSLLETIFITHLLHVATTQPLPLPRWLHSLLLHCTGQGRCCPTAPQKGNKGP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 ALCLSLMVGSLLETIFITHLLHVATTQPLPLPRWLHSLLLHCTGQGRCCPTAPQKGNKGP
320 330 340 350 360 370
150 160 170 180 190 200
pF1KE5 GLTPTHLPGVKEPEVSAGQMPGPGEAELTGGSEWTRAQREHEAQKQHSVELWVQFSHAMD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 GLTPTHLPGVKEPEVSAGQMPGPGEAELTGGSEWTRAQREHEAQKQHSVELWVQFSHAMD
380 390 400 410 420 430
210 220 230
pF1KE5 ALLFRLYLLFMASSIITVICLWNT
::::::::::::::::::::::::
CCDS54 ALLFRLYLLFMASSIITVICLWNT
440 450
>>CCDS58869.1 HTR3E gene_id:285242|Hs108|chr3 (441 aa)
initn: 1262 init1: 974 opt: 974 Z-score: 1003.5 bits: 193.9 E(32554): 1.4e-49
Smith-Waterman score: 1248; 81.9% identity (90.5% similar) in 232 aa overlap (2-233:226-441)
10 20 30
pF1KE5 MVAIRRRCRPSPYVVNFLVPSGILIAIDALS
::::: ::: ::.:.:::::.:.::::::
CCDS58 THGEWELLGLSKATAKLSRGGNLYDQIVFYVAIRR--RPSLYVINLLVPSGFLVAIDALS
200 210 220 230 240 250
40 50 60 70 80 90
pF1KE5 FYLPLESGNCAPFKMTVLLGYSVFLLMMNDLLPATSTSSHASLVRPHPSRDQKRGVYFAL
::::..::: .:::.:.::::.::::::.::::...: :. ::::::
CCDS58 FYLPVKSGNRVPFKITLLLGYNVFLLMMSDLLPTSGTP----LI----------GVYFAL
260 270 280 290
100 110 120 130 140 150
pF1KE5 CLSLMVGSLLETIFITHLLHVATTQPLPLPRWLHSLLLHCTGQGRCCPTAPQKGNKGPGL
:::::::::::::::::::::::::: :::::::::::::.. :::::::::: ::::::
CCDS58 CLSLMVGSLLETIFITHLLHVATTQPPPLPRWLHSLLLHCNSPGRCCPTAPQKENKGPGL
300 310 320 330 340 350
160 170 180 190 200 210
pF1KE5 TPTHLPGVKEPEVSAGQMPGPGEAELTGGSEWTRAQREHEAQKQHSVELWVQFSHAMDAL
:::::::::::::::::::::.::::::::::::::::::::::::::::.::::::::.
CCDS58 TPTHLPGVKEPEVSAGQMPGPAEAELTGGSEWTRAQREHEAQKQHSVELWLQFSHAMDAM
360 370 380 390 400 410
220 230
pF1KE5 LFRLYLLFMASSIITVICLWNT
::::::::::::::::::::::
CCDS58 LFRLYLLFMASSIITVICLWNT
420 430 440
>>CCDS58868.1 HTR3E gene_id:285242|Hs108|chr3 (456 aa)
initn: 1262 init1: 974 opt: 974 Z-score: 1003.3 bits: 193.9 E(32554): 1.5e-49
Smith-Waterman score: 1248; 81.9% identity (90.5% similar) in 232 aa overlap (2-233:241-456)
10 20 30
pF1KE5 MVAIRRRCRPSPYVVNFLVPSGILIAIDALS
::::: ::: ::.:.:::::.:.::::::
CCDS58 THGEWELLGLSKATAKLSRGGNLYDQIVFYVAIRR--RPSLYVINLLVPSGFLVAIDALS
220 230 240 250 260
40 50 60 70 80 90
pF1KE5 FYLPLESGNCAPFKMTVLLGYSVFLLMMNDLLPATSTSSHASLVRPHPSRDQKRGVYFAL
::::..::: .:::.:.::::.::::::.::::...: :. ::::::
CCDS58 FYLPVKSGNRVPFKITLLLGYNVFLLMMSDLLPTSGTP----LI----------GVYFAL
270 280 290 300 310
100 110 120 130 140 150
pF1KE5 CLSLMVGSLLETIFITHLLHVATTQPLPLPRWLHSLLLHCTGQGRCCPTAPQKGNKGPGL
:::::::::::::::::::::::::: :::::::::::::.. :::::::::: ::::::
CCDS58 CLSLMVGSLLETIFITHLLHVATTQPPPLPRWLHSLLLHCNSPGRCCPTAPQKENKGPGL
320 330 340 350 360 370
160 170 180 190 200 210
pF1KE5 TPTHLPGVKEPEVSAGQMPGPGEAELTGGSEWTRAQREHEAQKQHSVELWVQFSHAMDAL
:::::::::::::::::::::.::::::::::::::::::::::::::::.::::::::.
CCDS58 TPTHLPGVKEPEVSAGQMPGPAEAELTGGSEWTRAQREHEAQKQHSVELWLQFSHAMDAM
380 390 400 410 420 430
220 230
pF1KE5 LFRLYLLFMASSIITVICLWNT
::::::::::::::::::::::
CCDS58 LFRLYLLFMASSIITVICLWNT
440 450
>>CCDS58870.1 HTR3E gene_id:285242|Hs108|chr3 (456 aa)
initn: 1262 init1: 974 opt: 974 Z-score: 1003.3 bits: 193.9 E(32554): 1.5e-49
Smith-Waterman score: 1248; 81.9% identity (90.5% similar) in 232 aa overlap (2-233:241-456)
10 20 30
pF1KE5 MVAIRRRCRPSPYVVNFLVPSGILIAIDALS
::::: ::: ::.:.:::::.:.::::::
CCDS58 THGEWELLGLSKATAKLSRGGNLYDQIVFYVAIRR--RPSLYVINLLVPSGFLVAIDALS
220 230 240 250 260
40 50 60 70 80 90
pF1KE5 FYLPLESGNCAPFKMTVLLGYSVFLLMMNDLLPATSTSSHASLVRPHPSRDQKRGVYFAL
::::..::: .:::.:.::::.::::::.::::...: :. ::::::
CCDS58 FYLPVKSGNRVPFKITLLLGYNVFLLMMSDLLPTSGTP----LI----------GVYFAL
270 280 290 300 310
100 110 120 130 140 150
pF1KE5 CLSLMVGSLLETIFITHLLHVATTQPLPLPRWLHSLLLHCTGQGRCCPTAPQKGNKGPGL
:::::::::::::::::::::::::: :::::::::::::.. :::::::::: ::::::
CCDS58 CLSLMVGSLLETIFITHLLHVATTQPPPLPRWLHSLLLHCNSPGRCCPTAPQKENKGPGL
320 330 340 350 360 370
160 170 180 190 200 210
pF1KE5 TPTHLPGVKEPEVSAGQMPGPGEAELTGGSEWTRAQREHEAQKQHSVELWVQFSHAMDAL
:::::::::::::::::::::.::::::::::::::::::::::::::::.::::::::.
CCDS58 TPTHLPGVKEPEVSAGQMPGPAEAELTGGSEWTRAQREHEAQKQHSVELWLQFSHAMDAM
380 390 400 410 420 430
220 230
pF1KE5 LFRLYLLFMASSIITVICLWNT
::::::::::::::::::::::
CCDS58 LFRLYLLFMASSIITVICLWNT
440 450
>>CCDS3251.1 HTR3E gene_id:285242|Hs108|chr3 (471 aa)
initn: 1262 init1: 974 opt: 974 Z-score: 1003.1 bits: 193.9 E(32554): 1.5e-49
Smith-Waterman score: 1248; 81.9% identity (90.5% similar) in 232 aa overlap (2-233:256-471)
10 20 30
pF1KE5 MVAIRRRCRPSPYVVNFLVPSGILIAIDALS
::::: ::: ::.:.:::::.:.::::::
CCDS32 THGEWELLGLSKATAKLSRGGNLYDQIVFYVAIRR--RPSLYVINLLVPSGFLVAIDALS
230 240 250 260 270 280
40 50 60 70 80 90
pF1KE5 FYLPLESGNCAPFKMTVLLGYSVFLLMMNDLLPATSTSSHASLVRPHPSRDQKRGVYFAL
::::..::: .:::.:.::::.::::::.::::...: :. ::::::
CCDS32 FYLPVKSGNRVPFKITLLLGYNVFLLMMSDLLPTSGTP----LI----------GVYFAL
290 300 310 320
100 110 120 130 140 150
pF1KE5 CLSLMVGSLLETIFITHLLHVATTQPLPLPRWLHSLLLHCTGQGRCCPTAPQKGNKGPGL
:::::::::::::::::::::::::: :::::::::::::.. :::::::::: ::::::
CCDS32 CLSLMVGSLLETIFITHLLHVATTQPPPLPRWLHSLLLHCNSPGRCCPTAPQKENKGPGL
330 340 350 360 370 380
160 170 180 190 200 210
pF1KE5 TPTHLPGVKEPEVSAGQMPGPGEAELTGGSEWTRAQREHEAQKQHSVELWVQFSHAMDAL
:::::::::::::::::::::.::::::::::::::::::::::::::::.::::::::.
CCDS32 TPTHLPGVKEPEVSAGQMPGPAEAELTGGSEWTRAQREHEAQKQHSVELWLQFSHAMDAM
390 400 410 420 430 440
220 230
pF1KE5 LFRLYLLFMASSIITVICLWNT
::::::::::::::::::::::
CCDS32 LFRLYLLFMASSIITVICLWNT
450 460 470
>>CCDS58871.1 HTR3E gene_id:285242|Hs108|chr3 (482 aa)
initn: 1262 init1: 974 opt: 974 Z-score: 1002.9 bits: 193.9 E(32554): 1.5e-49
Smith-Waterman score: 1248; 81.9% identity (90.5% similar) in 232 aa overlap (2-233:267-482)
10 20 30
pF1KE5 MVAIRRRCRPSPYVVNFLVPSGILIAIDALS
::::: ::: ::.:.:::::.:.::::::
CCDS58 THGEWELLGLSKATAKLSRGGNLYDQIVFYVAIRR--RPSLYVINLLVPSGFLVAIDALS
240 250 260 270 280 290
40 50 60 70 80 90
pF1KE5 FYLPLESGNCAPFKMTVLLGYSVFLLMMNDLLPATSTSSHASLVRPHPSRDQKRGVYFAL
::::..::: .:::.:.::::.::::::.::::...: :. ::::::
CCDS58 FYLPVKSGNRVPFKITLLLGYNVFLLMMSDLLPTSGTP----LI----------GVYFAL
300 310 320 330 340
100 110 120 130 140 150
pF1KE5 CLSLMVGSLLETIFITHLLHVATTQPLPLPRWLHSLLLHCTGQGRCCPTAPQKGNKGPGL
:::::::::::::::::::::::::: :::::::::::::.. :::::::::: ::::::
CCDS58 CLSLMVGSLLETIFITHLLHVATTQPPPLPRWLHSLLLHCNSPGRCCPTAPQKENKGPGL
350 360 370 380 390 400
160 170 180 190 200 210
pF1KE5 TPTHLPGVKEPEVSAGQMPGPGEAELTGGSEWTRAQREHEAQKQHSVELWVQFSHAMDAL
:::::::::::::::::::::.::::::::::::::::::::::::::::.::::::::.
CCDS58 TPTHLPGVKEPEVSAGQMPGPAEAELTGGSEWTRAQREHEAQKQHSVELWLQFSHAMDAM
410 420 430 440 450 460
220 230
pF1KE5 LFRLYLLFMASSIITVICLWNT
::::::::::::::::::::::
CCDS58 LFRLYLLFMASSIITVICLWNT
470 480
>>CCDS3250.1 HTR3C gene_id:170572|Hs108|chr3 (447 aa)
initn: 813 init1: 527 opt: 530 Z-score: 549.0 bits: 109.8 E(32554): 2.9e-24
Smith-Waterman score: 982; 69.8% identity (79.3% similar) in 232 aa overlap (2-233:241-447)
10 20 30
pF1KE5 MVAIRRRCRPSPYVVNFLVPSGILIAIDALS
::::: ::: :..:.::::..:.::::::
CCDS32 TQGEWELLGINKATPKMSMGNNLYDQIMFYVAIRR--RPSLYIINLLVPSSFLVAIDALS
220 230 240 250 260
40 50 60 70 80 90
pF1KE5 FYLPLESGNCAPFKMTVLLGYSVFLLMMNDLLPATSTSSHASLVRPHPSRDQKRGVYFAL
:::: :: : ::::.:.::::.::::::::::::..: : : :::::
CCDS32 FYLPAESENRAPFKITLLLGYNVFLLMMNDLLPASGT--------PLIS------VYFAL
270 280 290 300 310
100 110 120 130 140 150
pF1KE5 CLSLMVGSLLETIFITHLLHVATTQPLPLPRWLHSLLLHCTGQGRCCPTAPQKGNKGPGL
:::::: :::::.:::.::::::::: :.::::::::::::. :::::::::::::: ::
CCDS32 CLSLMVVSLLETVFITYLLHVATTQPPPMPRWLHSLLLHCTSPGRCCPTAPQKGNKGLGL
320 330 340 350 360 370
160 170 180 190 200 210
pF1KE5 TPTHLPGVKEPEVSAGQMPGPGEAELTGGSEWTRAQREHEAQKQHSVELWVQFSHAMDAL
: ::::: ::: ::. :: :.: ::: ::..: .:::::::::::.:
CCDS32 TLTHLPGPKEPGELAGKKLGPRETEPDGGSGWTKTQL---------MELWVQFSHAMDTL
380 390 400 410 420
220 230
pF1KE5 LFRLYLLFMASSIITVICLWNT
:::::::::::::.::: ::::
CCDS32 LFRLYLLFMASSILTVIVLWNT
430 440
233 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 23:26:24 2016 done: Mon Nov 7 23:26:24 2016
Total Scan time: 1.830 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]