FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5287, 226 aa
  1>>>pF1KE5287 226 - 226 aa - 226 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 9.2462+/-0.000367; mu= -3.5020+/- 0.023
 mean_var=238.3845+/-49.722, 0's: 0 Z-trim(121.5): 36  B-trim: 1900 in 2/55
 Lambda= 0.083068
 statistics sampled from 38185 (38238) to 38185 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.788), E-opt: 0.2 (0.448), width:  16
 Scan time:  7.310

The best scores are:                                      opt bits E(85289)
NP_001882 (OMIM: 115460) beta-casein isoform 1 pre ( 226) 1531 195.5   6e-50
XP_016863249 (OMIM: 115460) PREDICTED: beta-casein ( 226) 1531 195.5   6e-50
NP_001289699 (OMIM: 115460) beta-casein isoform 2  ( 225) 1512 193.2 2.9e-49


>>NP_001882 (OMIM: 115460) beta-casein isoform 1 precurs  (226 aa)
 initn: 1531 init1: 1531 opt: 1531  Z-score: 1017.7  bits: 195.5 E(85289): 6e-50
Smith-Waterman score: 1531; 100.0% identity (100.0% similar) in 226 aa overlap (1-226:1-226)

               10        20        30        40        50        60
pF1KE5 MKVLILACLVALALARETIESLSSSEESITEYKQKVEKVKHEDQQQGEDEHQDKIYPSFQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MKVLILACLVALALARETIESLSSSEESITEYKQKVEKVKHEDQQQGEDEHQDKIYPSFQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 PQPLIYPFVEPIPYGFLPQNILPLAQPAVVLPVPQPEIMEVPKAKDTVYTKGRVMPVLKS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PQPLIYPFVEPIPYGFLPQNILPLAQPAVVLPVPQPEIMEVPKAKDTVYTKGRVMPVLKS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 PTIPFFDPQIPKLTDLENLHLPLPLLQPLMQQVPQPIPQTLALPPQPLWSVPQPKVLPIP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PTIPFFDPQIPKLTDLENLHLPLPLLQPLMQQVPQPIPQTLALPPQPLWSVPQPKVLPIP
              130       140       150       160       170       180

              190       200       210       220      
pF1KE5 QQVVPYPQRAVPVQALLLNQELLLNPTHQIYPVTQPLAPVHNPISV
       ::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QQVVPYPQRAVPVQALLLNQELLLNPTHQIYPVTQPLAPVHNPISV
              190       200       210       220      

>>XP_016863249 (OMIM: 115460) PREDICTED: beta-casein iso  (226 aa)
 initn: 1531 init1: 1531 opt: 1531  Z-score: 1017.7  bits: 195.5 E(85289): 6e-50
Smith-Waterman score: 1531; 100.0% identity (100.0% similar) in 226 aa overlap (1-226:1-226)

               10        20        30        40        50        60
pF1KE5 MKVLILACLVALALARETIESLSSSEESITEYKQKVEKVKHEDQQQGEDEHQDKIYPSFQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MKVLILACLVALALARETIESLSSSEESITEYKQKVEKVKHEDQQQGEDEHQDKIYPSFQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 PQPLIYPFVEPIPYGFLPQNILPLAQPAVVLPVPQPEIMEVPKAKDTVYTKGRVMPVLKS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PQPLIYPFVEPIPYGFLPQNILPLAQPAVVLPVPQPEIMEVPKAKDTVYTKGRVMPVLKS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 PTIPFFDPQIPKLTDLENLHLPLPLLQPLMQQVPQPIPQTLALPPQPLWSVPQPKVLPIP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PTIPFFDPQIPKLTDLENLHLPLPLLQPLMQQVPQPIPQTLALPPQPLWSVPQPKVLPIP
              130       140       150       160       170       180

              190       200       210       220      
pF1KE5 QQVVPYPQRAVPVQALLLNQELLLNPTHQIYPVTQPLAPVHNPISV
       ::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QQVVPYPQRAVPVQALLLNQELLLNPTHQIYPVTQPLAPVHNPISV
              190       200       210       220      

>>NP_001289699 (OMIM: 115460) beta-casein isoform 2 prec  (225 aa)
 initn: 1344 init1: 1344 opt: 1512  Z-score: 1005.4  bits: 193.2 E(85289): 2.9e-49
Smith-Waterman score: 1512; 99.6% identity (99.6% similar) in 226 aa overlap (1-226:1-225)

               10        20        30        40        50        60
pF1KE5 MKVLILACLVALALARETIESLSSSEESITEYKQKVEKVKHEDQQQGEDEHQDKIYPSFQ
       ::::::::::::::::::::::::::::::::: ::::::::::::::::::::::::::
NP_001 MKVLILACLVALALARETIESLSSSEESITEYK-KVEKVKHEDQQQGEDEHQDKIYPSFQ
               10        20        30         40        50         

               70        80        90       100       110       120
pF1KE5 PQPLIYPFVEPIPYGFLPQNILPLAQPAVVLPVPQPEIMEVPKAKDTVYTKGRVMPVLKS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PQPLIYPFVEPIPYGFLPQNILPLAQPAVVLPVPQPEIMEVPKAKDTVYTKGRVMPVLKS
      60        70        80        90       100       110         

              130       140       150       160       170       180
pF1KE5 PTIPFFDPQIPKLTDLENLHLPLPLLQPLMQQVPQPIPQTLALPPQPLWSVPQPKVLPIP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PTIPFFDPQIPKLTDLENLHLPLPLLQPLMQQVPQPIPQTLALPPQPLWSVPQPKVLPIP
     120       130       140       150       160       170         

              190       200       210       220      
pF1KE5 QQVVPYPQRAVPVQALLLNQELLLNPTHQIYPVTQPLAPVHNPISV
       ::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QQVVPYPQRAVPVQALLLNQELLLNPTHQIYPVTQPLAPVHNPISV
     180       190       200       210       220     




226 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 07:27:41 2016 done: Tue Nov  8 07:27:42 2016
 Total Scan time:  7.310 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]